--- doc/loncapafiles/loncapafiles.lpml	2012/05/02 00:04:55	1.797.2.1
+++ doc/loncapafiles/loncapafiles.lpml	2013/07/16 14:14:57	1.840
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.797.2.1 2012/05/02 00:04:55 raeburn Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.840 2013/07/16 14:14:57 raeburn Exp $ -->
 
 <!--
 
@@ -259,7 +259,7 @@ echo '**********************************
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/httpd/conf</targetdir>
   <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/apache2</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/apache2</targetdir>
   <categoryname>standard</categoryname>
   <description>web configuration files</description>
 </directory>
@@ -267,7 +267,7 @@ echo '**********************************
   <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>etc/httpd/conf/rewrites</targetdir>
   <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd/rewrites</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/apache2/rewrites</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/apache2/rewrites</targetdir>
   <categoryname>standard</categoryname>
   <description>
   default configuration files to enable/disable http:// -> https:// rewrites
@@ -283,56 +283,56 @@ echo '**********************************
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/init.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc0.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc1.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc2.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc3.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc4.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc5.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc6.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
@@ -571,6 +571,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/MathJax</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>MathJax files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/jsMath</targetdir>
   <categoryname>server readonly</categoryname>
   <description>jsMath support files</description>
@@ -680,6 +686,41 @@ extensions</description>
   <description>JQuery countdown timer</description>
 </directory>
   
+<!-- JQuery spellchecker plugin -->
+
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/spellchecker</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery spellchecker plugin</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/spellchecker/js</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery spellchecker plugin</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/spellchecker/css</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery spellchecker plugin</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/spellchecker/img</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery spellchecker plugin</description>
+</directory>
+
+<!-- JQuery nicescroll plugin -->
+
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/nicescroll</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery nicescroll plugin</description>
+</directory>
 
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
@@ -799,6 +840,7 @@ interface, Apache (mod_perl) handlers</d
   <categoryname>server readonly</categoryname>
   <description>error warnings and icons</description>
 </directory>
+
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lonUsers</targetdir>
@@ -877,12 +919,6 @@ are viewable over the world-wide web</de
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/lonLCDfont</targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>LCD font for remote control</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonDomLogos</targetdir>
   <categoryname>server readonly</categoryname>
   <description>Logos for LON-CAPA domains</description>
@@ -901,13 +937,6 @@ are viewable over the world-wide web</de
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/res/adm/pages/bookmarkmenu
-  </targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>bookmark user interface code</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages/annotations
   </targetdir>
   <categoryname>server readonly</categoryname>
@@ -1008,7 +1037,7 @@ each list element consists of only two s
 <file>
 <source>loncom/loncapa.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa.conf</target>
 <categoryname>conf</categoryname>
 <description>
 <p>
@@ -1051,7 +1080,7 @@ MySQL database</td></tr>
 <file type="postaboutversion">
 <source>loncom/loncapa_apache.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa_apache.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa_apache.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa_apache.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 The goal of this file is to implement all LON-CAPA specific
@@ -1069,9 +1098,22 @@ the www@localhost MySQL password, and br
 </description>
 </file>
 <file>
+<source>loncom/loncapa_apache_local.conf</source>
+<target dist='default'>etc/httpd/conf/loncapa_apache_local.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/startup.pl</target>
+<categoryname>static conf</categoryname>
+<description>
+Documentation file describing how to add domain-specific Apache configuration
+files, e.g., (loncapa_apache_localmsu.conf).
+loncapa_apache_local.conf needs to exist if no domain-specific file has so far
+been created so that Apache 2.4 will start, given that loncapa_apache.conf has:
+Include conf/loncapa_apache_local*.conf
+</description>
+</file>
+<file>
 <source>loncom/startup.pl</source>
 <target dist='default'>etc/httpd/conf/startup.pl</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/startup.pl</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/startup.pl</target>
 <categoryname>static conf</categoryname>
 <description>
 This file provides initializations for perl handlers.  It adjusts what
@@ -1082,7 +1124,7 @@ well as causing the Apache module to be
 </file>
 <link>
 <linkto>etc/apache2</linkto>
-<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>
+<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>
 etc/apache2/conf
 </target>
 <categoryname>symbolic link</categoryname>
@@ -1093,7 +1135,7 @@ symbolic link to directory /etc/apache2
 <file>
 <source>loncom/rewrites/loncapa_rewrite_off.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa_rewrite.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa_rewrite.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa_rewrite.conf</target>
 <categoryname>conf</categoryname>
 <description>
 Default rewrite file. 
@@ -1105,7 +1147,7 @@ by setting: RewriteEngine off
 <source>loncom/rewrites/loncapa_rewrite_on.conf</source>
 <target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_on.conf</target>
 <target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_on.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/rewrites/loncapa_rewrite_on.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/rewrites/loncapa_rewrite_on.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to enable rewriting of
@@ -1116,7 +1158,7 @@ external requests for http:// to https:/
 <source>loncom/rewrites/loncapa_rewrite_off.conf</source>
 <target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_off.conf</target>
 <target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_off.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/rewrites/loncapa_rewrite_off.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/rewrites/loncapa_rewrite_off.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to disable rewriting of
@@ -1281,6 +1323,16 @@ utility cgi script to view software vers
 </description>
 </file>
 <file>
+<source>loncom/cgi/lonmodulecheck.pl</source>
+<target dist='default'>home/httpd/cgi-bin/lonmodulecheck.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to check for differences between currently 
+installed versions of LON-CAPA modules and those expected for the 
+LON-CAPA release installed on the server.
+</description>
+</file>
+<file>
 <source>loncom/cgi/ping.pl</source>
 <target dist='default'>home/httpd/cgi-bin/ping.pl</target>
 <categoryname>script</categoryname>
@@ -1479,6 +1531,8 @@ man1.jpg;
 man1.jpg.meta;
 numerical.problem;
 numerical.problem.meta;
+numMultiAnswerUnordered.problem;
+numMultiAnswerUnordered.problem.meta;
 numPrePro.problem;
 numPrePro.problem.meta;
 Plot.problem.meta;
@@ -1542,6 +1596,15 @@ reaction_hint.problem.meta
 </fileglob>
 
 <file>
+  <source>loncom/interface/spellcheck.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/spellcheck.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Ajax handler for the spellcheck Jquery plugin
+  </description>
+  <status>IN testing</status>
+</file>
+<file>
   <source>loncom/homework/insertlist.xml</source>
   <target dist='default'>home/httpd/lonTabs/insertlist.xml</target>
   <categoryname>static conf</categoryname>
@@ -1662,6 +1725,17 @@ List of all domains in the LON-CAPA netw
 </file>
 
 <file>
+  <source>loncom/dns_checksums.tab</source>
+  <target dist='default'>home/httpd/lonTabs/dns_checksums.tab</target>
+  <categoryname>www static conf</categoryname>
+  <description>
+File containing version numbers and checksums for most LON-CAPA perl modules,
+perl scripts, cgi scripts, daemons, and a configuration file in each 
+LON-CAPA release, starting with 2.11.0.RC1
+  </description>
+</file>
+
+<file>
   <source>loncom/loncaparevs.tab</source>
   <target dist='default'>home/httpd/lonTabs/loncaparevs.tab</target>
   <categoryname>www conf</categoryname>
@@ -1681,6 +1755,17 @@ File holds paired data -- hostname:lonHo
 </file>
 
 <file>
+  <source>loncom/lonchksums.tab</source>
+  <target dist='default'>home/httpd/lonTabs/lonchksums.tab</target>
+  <categoryname>www conf</categoryname>
+  <description>
+File containing version numbers and checksums for most LON-CAPA perl modules,
+perl scripts, cgi scripts, daemons, and a configuration file for current
+server. Updated by loncron.
+  </description>
+</file>
+
+<file>
 <source>loncom/spare.tab</source>
 <target dist='default'>home/httpd/lonTabs/spare.tab</target>
 <categoryname>conf</categoryname>
@@ -1786,6 +1871,17 @@ file: nohist_courseids.db found in /home
 </description>
 </file>
 <file>
+<source>loncom/misc/checkforupdates.pl</source>
+<target dist='default'>home/httpd/perl/checkforupdates.pl</target>
+<categoryname>script</categoryname>
+<description>
+Perl script run by cron to check:
+(a) for differences between currently installed versions of LON-CAPA modules
+and those expected for the particular LON-CAPA release
+(b) if an updated LON-CAPA release is available from install.loncapa.org  
+</description>
+</file>
+<file>
 <source>loncom/debugging_tools/seed_accesscount.pl</source>
 <target dist='default'>home/httpd/perl/seed_accesscount.pl</target>
 <categoryname>script</categoryname>
@@ -2331,6 +2427,15 @@ Handler to put up simple page
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonextresedit.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonextresedit.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to edit external resource.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
   <source>loncom/interface/lonpickcode.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonpickcode.pm</target>
   <categoryname>handler</categoryname>
@@ -2733,6 +2838,9 @@ anno.gif;
 anot.gif;
 anot2.gif;
 authorRemote.gif;
+author_example_directory.gif
+author_new_content.gif
+author_top_menu.gif
 bchat.gif;
 blog.gif;
 catalog.gif;
@@ -2768,6 +2876,9 @@ FPRexamples.gif;
 fromfile.gif;
 grds.gif;
 grps.gif;
+help.gif;
+html_page_plaintext.gif;
+html_page_richtext.gif;
 list-add.gif;
 login.gif;
 lonhelpheader.gif;
@@ -2790,6 +2901,7 @@ mapStraightened.gif;
 mapTwoResources.gif;
 messalog.gif;
 mngcu.gif;
+multiple_choice_problem_menu.gif;
 nav.gif;
 navigation.gif;
 network-workgroup.gif;
@@ -2808,6 +2920,9 @@ pref.gif;
 preferences-desktop-font.gif;
 preferences-desktop-locale.gif;
 preferences-desktop-theme.gif;
+problem_editing_colorful.gif
+problem_editing_xml.gif
+problem_testing.gif
 prt.gif;
 publishMetadata.gif;
 radioResponse2.gif;
@@ -2839,6 +2954,8 @@ uploadscores.gif;
 uplusr.gif;
 vbkm.gif;
 verify.gif;
+wishlist.gif;
+wishlist-link.gif;
 iclicker.gif;
 interwrite1.gif;
 interwrite2.gif;
@@ -2880,6 +2997,9 @@ anno.eps;
 anot.eps;
 anot2.eps;
 authorRemote.eps;
+author_example_directory.eps
+author_new_content.eps
+author_top_menu.eps
 bchat.eps;
 blog.eps;
 catalog.eps;
@@ -2915,6 +3035,9 @@ FPRexamples.eps;
 fromfile.eps;
 grds.eps;
 grps.eps;
+help.eps;
+html_page_plaintext.eps;
+html_page_richtext.eps;
 list-add.eps;
 lonhelpheader.eps;
 login.eps;
@@ -2937,6 +3060,7 @@ mapStraightened.eps;
 mapTwoResources.eps;
 messalog.eps;
 mngcu.eps;
+multiple_choice_problem_menu.eps;
 nav.eps;
 navigation.eps;
 network-workgroup.eps;
@@ -2954,6 +3078,9 @@ port.eps;
 preferences-desktop-font.eps;
 preferences-desktop-locale.eps;
 preferences-desktop-theme.eps;
+problem_editing_colorful.eps
+problem_editing_xml.eps
+problem_testing.eps
 prt.eps;
 publishMetadata.eps;
 radioResponse2.eps;
@@ -2985,6 +3112,8 @@ uploadscores.eps;
 uplusr.eps;
 vbkm.eps;
 verify.eps;
+wishlist.eps;
+wishlist-link.eps;
 iclicker.eps;
 interwrite1.eps;
 interwrite2.eps;
@@ -3016,6 +3145,7 @@ Ambiguous_Reference.tex;
 Analysis_Analyze_Over.tex;
 Analyze_Problem.tex;
 Answer_Date.tex;
+Answer_Display_Overview.tex;
 Annotation.tex;
 Authentication.tex;
 Auth_Options.tex;
@@ -3054,13 +3184,14 @@ Authoring_Response_Tag_Intro.tex;
 Authoring_Scripting_Tags.tex;
 Authoring_Spreadsheet.tex;
 Authoring_Structure_Tags.tex;
+Authoring_Surveys.tex;
 Authoring_XML_Intro.tex;
 Author_LON-CAPA_Introduction.tex;
 Author_Manual_Title_Page.tex;
+Author_Menu.tex;
 Author_Numerical_and_Formula.tex;
 Author_Remote_Control.tex;
 Batch_Creation.tex;
-Bookmarks.tex;
 BridgeTask_About.tex;
 BridgeTask_Conditions.tex;
 BridgeTask_Create.tex;
@@ -3102,6 +3233,7 @@ Chatting.tex;
 Clicker_Registration.tex;
 Coauthor.tex;
 Construction_Space_Overview.tex;
+Content_Page_Overview.tex
 Contextual_Help.tex;
 Course_Add_Other.tex;
 Course_Add_Student.tex;
@@ -3114,6 +3246,7 @@ Course_Convert_To_CSV.tex;
 Course_Coordination_Intro.tex;
 Course_Create_Class_List.tex;
 Course_Critical_Message.tex;
+Course_Prefs_Settings.tex;
 Course_Deleting.tex;
 Course_Disable_Discussion.tex;
 Course_Discussion_Board.tex;
@@ -3174,11 +3307,15 @@ Course_User_Parameter.tex;
 Course_View_Class_List.tex;
 Create_Course.tex;
 Creating_A_Course_Intro.tex;
+Creating_Content_Overview.tex
 Creating_Domain_Coordinators.tex;
+Creating_Formula_Response.tex;
 Creating_Groups.tex;
 Creating_New_Content_Pages.tex;
 Creating_Online_Problems.tex;
+Creating_Math_Response_Problems.tex
 Creating_Radio_Response_Problems.tex;
+Custom_Response_Problem_Creation.tex
 Custom_Response_Problems.tex;
 Deleting_Domain_Coordinators.tex;
 Developer_Manual_Title_Page.tex;
@@ -3201,6 +3338,7 @@ Docs_Dump_Course_Docs.tex;
 Docs_Export_Course_Docs.tex;
 Docs_Editing_Templated_Pages.tex;
 Docs_Essay.tex;
+Docs_Importing_IMS_Course.tex;
 Docs_Importing_LON-CAPA_Resource.tex;
 Docs_Load_Map.tex;
 Docs_Main_Course_Documents.tex;
@@ -3237,7 +3375,9 @@ Domain_Coordination_Intro.tex;
 Domain_Coordination_Overview.tex;
 Domain_Crontab_Entries.tex;
 Domain_Manual_Title_Page.tex;
+Dropbox.tex;
 Due_Date.tex;
+Dynamic_Plot_Overview.tex;
 Edit_Syllabus.tex;
 Error.tex;
 exam_answers.tex;
@@ -3265,6 +3405,7 @@ Formula_Response_Limitations.tex;
 Formula_Response_Problems.tex;
 Formula_Response_Sampling.tex;
 Formula_Tolerance.tex;
+Function_Plot_Response_Overview.tex
 Function_Plot_Response_Background_Plot.tex;
 Function_Plot_Response_Evaluation_Rule.tex;
 Function_Plot_Response_Rule_Set.tex;
@@ -3481,6 +3622,7 @@ View_Critical_Messages.tex;
 View_recent_activity.tex;
 What_Is_LON-CAPA.tex;
 Why_LON-CAPA.tex;
+Wishlist.tex;
 </filenames>
 </fileglob>
 <fileglob>
@@ -3499,6 +3641,9 @@ Auth_Options.tex;
 Authoring_Math_Editor.tex;
 Contextual_Help.tex;
 Cascading_Parameters.tex;
+Change_Colors.tex;
+Change_Discussion_Display.tex;
+Change_Password.tex;
 Course_Convert_To_CSV.tex;
 Course_Create_Class_List.tex;
 Course_Self_Enrollment.tex;
@@ -3519,6 +3664,25 @@ Generation.tex;
 Metadata_Description.tex;
 Navigation_Screen.tex;
 Parameter_Overview.tex;
+Portfolio_About.tex;
+Portfolio_AddFiles.tex;
+Portfolio_Catalog.tex;
+Portfolio_ChangeDirectory.tex;
+Portfolio_CreateDirectory.tex;
+Portfolio_DeleteFile.tex;
+Portfolio_FileAction.tex;
+Portfolio_FileList.tex;
+Portfolio_OpenFile.tex;
+Portfolio_RenameFile.tex;
+Portfolio_ShareFile.tex;
+Portfolio_ShareFile_ChangeSetting.tex;
+Portfolio_ShareFile_Conditional.tex;
+Portfolio_ShareFile_SetAccess.tex;
+Portfolio_ShareFile_StopAccess.tex;
+Prefs_About_Me.tex;
+Prefs_Language.tex;
+Prefs_Messages.tex;
+Prefs_Screen_Name_Nickname.tex;
 Problem_Parameters.tex;
 Publishing_Copyright.tex;
 Publishing_Keywords.tex;
@@ -4457,6 +4621,7 @@ jsMath is a Javascript solution to conve
 black.gif;
 blank.gif;
 COPYING.txt;
+FONTSVERSION;
 jsMath-BaKoMa-fonts.js;
 jsMath-autoload.html;
 jsMath-controls.html;
@@ -4485,7 +4650,7 @@ jsMath-old-browsers.js;
     Server side png fonts for use by jsMath
   </description>
   <installscript>
-commands /home/httpd/html/adm
+commands
   </installscript>
   <dependencies>
 loncom/html/adm/jsMath/commands;
@@ -4494,7 +4659,44 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
 </file>
 
 <file>
-  <source>loncom/html/adm/ckeditor/ckeditor_3.6.2.tar.gz</source>
+  <source>loncom/html/adm/MathJax/mathjax-MathJax-v2.1-241378e.zip</source>
+  <target dist='default'>home/httpd/html/adm/MathJax</target>
+  <categoryname>script</categoryname>
+  <description>
+   MathJax for processing Tex, scripted installation that unzips installation file
+   in the appropriate location
+   NOTE: the commands file `mv`'s the files out of the original location provided
+   unzipping the file, making it look cleaner in the /home/.../adm/ directory
+  </description>
+  <installscript>
+commands
+  </installscript>
+  <dependencies>
+loncom/html/adm/MathJax/commands;
+loncom/html/adm/MathJax/VERSION;
+loncom/html/adm/MathJax/mathjax-MathJax-v2.1-241378e.zip
+  </dependencies>
+</file>
+
+<file>
+  <source>loncom/html/adm/geogebra/geogebra_html5.tar.gz</source>
+  <target dist='default'>home/httpd/html/adm/geogebra/web</target>
+  <categoryname>script</categoryname>
+  <description>
+   HTML5/JavaScript Version of GeoGebra
+  </description>
+  <installscript>
+commands
+  </installscript>
+  <dependencies>
+loncom/html/adm/geogebra/commands;
+loncom/html/adm/geogebra/VERSION;
+loncom/html/adm/geogebra/geogebra_html5.tar.gz;
+  </dependencies>
+</file>
+
+<file>
+  <source>loncom/html/adm/ckeditor/ckeditor_3.6.6.1.tar.gz</source>
   <target dist='default'>home/httpd/html/adm/ckeditor</target>
   <categoryname>script</categoryname>
   <description>
@@ -4502,11 +4704,11 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
    installs the loncapa config.js file
   </description>
   <installscript>
-commands /home/httpd/html/
+commands
   </installscript>
   <dependencies>
 loncom/html/adm/ckeditor/commands;
-loncom/html/adm/ckeditor/ckeditor_3.6.2.tar.gz;
+loncom/html/adm/ckeditor/ckeditor_3.6.6.1.tar.gz;
 loncom/html/adm/ckeditor/loncapaconfig.js;
   </dependencies>
 </file>
@@ -4600,7 +4802,7 @@ JQuery colorpicker javascript library
 JQuery colorpicker javascript library css files
   </description>
   <filenames>
-    jpicker-1.1.6.min.css;
+    jPicker-1.1.6.min.css;
   </filenames>
 </fileglob>
 
@@ -4635,51 +4837,51 @@ JQuery color picker javascript library i
 JQuery countdown timer javascript files
   </description>
   <filenames>
-    jquery.countdown-ar.js
-    jquery.countdown-bg.js
-    jquery.countdown-bn.js
-    jquery.countdown-ca.js
-    jquery.countdown-cs.js
-    jquery.countdown-da.js
-    jquery.countdown-de.js
-    jquery.countdown-el.js
-    jquery.countdown-es.js
-    jquery.countdown-et.js
-    jquery.countdown-fa.js
-    jquery.countdown-fi.js
-    jquery.countdown-fr.js
-    jquery.countdown-gl.js
-    jquery.countdown-he.js
-    jquery.countdown-hr.js
-    jquery.countdown-hu.js
-    jquery.countdown-id.js
-    jquery.countdown-it.js
-    jquery.countdown-ja.js
-    jquery.countdown.js
-    jquery.countdown-ko.js
-    jquery.countdown-lt.js
-    jquery.countdown-lv.js
-    jquery.countdown.min.js
-    jquery.countdown-ms.js
-    jquery.countdown-my.js
-    jquery.countdown-nb.js
-    jquery.countdown-nl.js
-    jquery.countdown.pack.js
-    jquery.countdown-pl.js
-    jquery.countdown-pt-BR.js
-    jquery.countdown-ro.js
-    jquery.countdown-ru.js
-    jquery.countdown-sk.js
-    jquery.countdown-sl.js
-    jquery.countdown-sr.js
-    jquery.countdown-sr-SR.js
-    jquery.countdown-sv.js
-    jquery.countdown-th.js
-    jquery.countdown-tr.js
-    jquery.countdown-uk.js
-    jquery.countdown-vi.js
-    jquery.countdown-zh-CN.js
-    jquery.countdown-zh-TW.js
+    jquery.countdown-ar.js;
+    jquery.countdown-bg.js;
+    jquery.countdown-bn.js;
+    jquery.countdown-ca.js;
+    jquery.countdown-cs.js;
+    jquery.countdown-da.js;
+    jquery.countdown-de.js;
+    jquery.countdown-el.js;
+    jquery.countdown-es.js;
+    jquery.countdown-et.js;
+    jquery.countdown-fa.js;
+    jquery.countdown-fi.js;
+    jquery.countdown-fr.js;
+    jquery.countdown-gl.js;
+    jquery.countdown-he.js;
+    jquery.countdown-hr.js;
+    jquery.countdown-hu.js;
+    jquery.countdown-id.js;
+    jquery.countdown-it.js;
+    jquery.countdown-ja.js;
+    jquery.countdown.js;
+    jquery.countdown-ko.js;
+    jquery.countdown-lt.js;
+    jquery.countdown-lv.js;
+    jquery.countdown.min.js;
+    jquery.countdown-ms.js;
+    jquery.countdown-my.js;
+    jquery.countdown-nb.js;
+    jquery.countdown-nl.js;
+    jquery.countdown.pack.js;
+    jquery.countdown-pl.js;
+    jquery.countdown-pt-BR.js;
+    jquery.countdown-ro.js;
+    jquery.countdown-ru.js;
+    jquery.countdown-sk.js;
+    jquery.countdown-sl.js;
+    jquery.countdown-sr.js;
+    jquery.countdown-sr-SR.js;
+    jquery.countdown-sv.js;
+    jquery.countdown-th.js;
+    jquery.countdown-tr.js;
+    jquery.countdown-uk.js;
+    jquery.countdown-vi.js;
+    jquery.countdown-zh-CN.js;
+    jquery.countdown-zh-TW.js;
    </filenames>
 </fileglob>
 <fileglob>
@@ -4691,7 +4893,7 @@ JQuery countdown timer javascript files
 JQuery countdown timer CSS files
   </description>
   <filenames>
-    jquery.countdown.css
+    jquery.countdown.css;
   </filenames>
 </fileglob>
 <fileglob>
@@ -4703,7 +4905,7 @@ JQuery countdown timer CSS files
 JQuery countdown timer Image file for Glowing countdown
   </description>
   <filenames>
-    countdownGlowing.gif
+    countdownGlowing.gif;
   </filenames>
 </fileglob>
 <fileglob>
@@ -4715,11 +4917,63 @@ JQuery countdown timer Image file for Gl
 JQuery countdown timer Image file for LED style countdown
   </description>
   <filenames>
-    countdownLED.png
+    countdownLED.png;
   </filenames>
 </fileglob>
 
 
+<!-- JQuery spellchecker plugin -->
+
+<fileglob>
+  <glob>*.js</glob>
+  <sourcedir>loncom/html/adm/spellcheck/js/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/spellchecker/js/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JQuery spellchecker plugin
+  </description>
+  <filenames>
+    jquery.spellchecker.min.js;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.css</glob>
+  <sourcedir>loncom/html/adm/spellcheck/css/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/spellchecker/css/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JQuery spellchecker plugin
+  </description>
+  <filenames>
+    spellchecker.css;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.png</glob>
+  <sourcedir>loncom/html/adm/spellcheck/img/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/spellchecker/img/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JQuery spellchecker plugin
+  </description>
+  <filenames>
+    spellchecker_shadow.png;
+    spellcheck.png;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.gif</glob>
+  <sourcedir>loncom/html/adm/spellcheck/img/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/spellchecker/img/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JQuery spellchecker plugin
+  </description>
+  <filenames>
+    spellchecker_bg.gif;
+  </filenames>
+</fileglob>
+
 
 <fileglob>
   <glob>*.*</glob>
@@ -4773,6 +5027,34 @@ jQuery custom distribution of version 1.
   </filenames>
 </fileglob>
 
+<!-- JQuery nicescroll plugin -->
+
+<fileglob>
+  <glob>*.js</glob>
+  <sourcedir>loncom/html/adm/nicescroll/js/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/nicescroll/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery nicescroll plugin javascript
+  </description>
+  <filenames>
+  jquery.nicescroll.min.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.png</glob>
+  <sourcedir>loncom/html/adm/nicescroll/images/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/nicescroll/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery nicescroll plugin image
+  </description>
+  <filenames>
+  zoomico.png;
+  </filenames>
+</fileglob>
+
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -4998,6 +5280,15 @@ Handles a searches inside courses/commun
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonindexcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonindexcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Course/community Indexer
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonmysql.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonmysql.pm</target>
 <categoryname>handler</categoryname>
@@ -5288,15 +5579,6 @@ Displays the Main menu
   <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonremote.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonremote.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Handler to launch and collapse the remote control.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/interface/portfolio.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/portfolio.pm</target>
 <categoryname>handler</categoryname>
@@ -5340,15 +5622,6 @@ Creates horizontal menubar in advanced R
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/html/res/adm/pages/homeworkmenu.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/homeworkmenu.html</target>
-<categoryname>handler</categoryname>
-<description>
-Homework remote control.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/html/res/adm/pages/chatroom.html</source>
 <target dist='default'>home/httpd/html/res/adm/pages/chatroom.html</target>
 <categoryname>handler</categoryname>
@@ -5367,16 +5640,6 @@ This will take annotations and then plug
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/html/res/adm/pages/bookmarkmenu/admbookmarks.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/admbookmarks.pm</target>
-<categoryname>handler</categoryname>
-<description>
-This will take bookmarks and get/write/display them for the LON-CAPA user
-interface.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>rat/lonratsrv.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonratsrv.pm</target>
 <categoryname>handler</categoryname>
@@ -6020,6 +6283,14 @@ by the URL-related pattern syntax:
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/auth/lonnoshib.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonnoshib.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Content handler for /adm/sso when Shibboleth auth is inactive.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
   <source>loncom/html/adm/sso</source>
   <target dist='default'>home/httpd/html/adm/sso</target>
   <categoryname>interface file</categoryname>
@@ -6218,7 +6489,7 @@ Domain information serving.
 <file>
 <source>loncom/mime.types</source>
 <target dist='default'>etc/httpd/conf/mime.types</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/mime.types</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/mime.types</target>
 <categoryname>www static conf</categoryname>
 <description>Expanded mime.types</description>
 </file>
@@ -6288,22 +6559,6 @@ javascript for horizontal menubar in RAT
 </description>
 </file>
 <file>
-<source>rat/client/extpickcode.html</source>
-<target dist='default'>home/httpd/html/adm/rat/extpickcode.html</target>
-<categoryname>interface file</categoryname>
-<description>
-javascript
-</description>
-</file>
-<file>
-<source>rat/client/extpickframe.html</source>
-<target dist='default'>home/httpd/html/adm/rat/extpickframe.html</target>
-<categoryname>interface file</categoryname>
-<description>
-javascript
-</description>
-</file>
-<file>
 <source>rat/client/map.html</source>
 <target dist='default'>home/httpd/html/adm/rat/map.html</target>
 <categoryname>interface file</categoryname>
@@ -6770,6 +7025,15 @@ tested
   <status>works/verified</status>
 </file>
 <file>
+  <source>loncom/Lond.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/Lond.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     Encapsulates functionality used by lond and lonnet.
+  </description>
+  <status>in progress</status>
+</file>
+<file>
   <source>loncom/LondConnection.pm</source>
   <target dist='default'>home/httpd/lib/perl/LONCAPA/LondConnection.pm</target>
   <categoryname>system file</categoryname>
@@ -6847,6 +7111,16 @@ for socket-based communication between L
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/configuration/Checksumming.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/Checksumming.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Provides routine to checksum perl modules, perl scripts, cgi scripts,
+language lexicons, and static configuration file on current server
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/ConfigFileEdit.pm</source>
 <target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
 <categoryname>system file</categoryname>
@@ -6882,6 +7156,8 @@ compiles/tth.so.i386.perl.5.12;
 compiles/tth.so.x86_64.perl.5.12;
 compiles/tth.so.i386.perl.5.14;
 compiles/tth.so.x86_64.perl.5.14;
+compiles/tth.so.i386.perl.5.16;
+compiles/tth.so.x86_64.perl.5.16;
 compiles/tth.so.i386.debian5;
 compiles/tth.so.x86_64.debian5
 </dependencies>
@@ -7250,61 +7526,6 @@ tmcc.tab;
 </fileglob>
 <fileglob>
 <glob>*.gif</glob>
-<sourcedir>loncom/html/adm/lonLCDfont/</sourcedir>
-<targetdir dist='default'>home/httpd/html/adm/lonLCDfont/</targetdir>
-<categoryname>graphic file</categoryname>
-<description>LON-CAPA remote control LCD font</description>
-<filenames>
-0.gif;
-1.gif;
-2.gif;
-3.gif;
-4.gif;
-5.gif;
-6.gif;
-7.gif;
-8.gif;
-9.gif;
-a.gif;
-b.gif;
-c.gif;
-d.gif;
-e.gif;
-f.gif;
-g.gif;
-h.gif;
-i.gif;
-j.gif;
-k.gif;
-l.gif;
-m.gif;
-n.gif;
-o.gif;
-p.gif;
-q.gif;
-r.gif;
-s.gif;
-t.gif;
-u.gif;
-v.gif;
-w.gif;
-x.gif;
-y.gif;
-z.gif;
-ö.gif;
-ä.gif;
-ü.gif;
-ä.gif;
-ö.gif;
-ü.gif;
-colon.gif;
-hyphen.gif;
-slash.gif;
-space.gif;
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/pt/</sourcedir>
 <targetdir dist='default'>home/httpd/html/res/adm/pages/pt/</targetdir>
 <categoryname>graphic file</categoryname>
@@ -7349,92 +7570,29 @@ vbkm_pt.gif;
 <categoryname>graphic file</categoryname>
 <description>icons used for the entire LON-CAPA user interface</description>
 <filenames>
-anno.gif;
-anot.gif;
-anot2.gif;
-back.gif;
-bchat.gif;
-bkm.gif;
-blog.gif;
-brws.gif;
-catalog.gif;
-ccat.gif;
-ccrs.gif;
 chat.gif;
-chrt.gif;
 close-all-folders.gif;
-close-navigation.gif;
-clst.gif;
-com.gif;
-conf.gif;
-courses.gif;
-cprv.gif;
-crsconf.gif;
-cstr.gif;
-del.gif;
-dempty.gif;
 dempty.gif;
-docs.gif;
 edittoplevel.gif;
-egrd.gif;
 empty.gif;
-enrl.gif;
-eval.gif;
-fdbk.gif;
 feedback.gif;
-forw.gif;
-grds.gif;
-grps.gif;
 group.gif;
 help.gif;
 info.gif;
-keys.gif;
 ledblink.gif;
 ledgreen.gif;
 ledoff.gif;
 ledon.gif;
-ledsend.gif;
-list.gif;
-logout.gif;
-mail.gif;
 mark-discussionentries-read.gif;
-mrk.gif;
-nav.gif;
-new.gif;
 next.gif;
 nothumb.gif;
 open-all-folders.gif;
 open-first-problem.gif;
-pdfupload.gif;
-parm.gif;
-pcstr.gif;
-pgrd.gif;
-port.gif;
-pparm.gif;
-pref.gif;
-prt.gif;
-pub.gif;
 qempty.gif;
-rcrs.gif;
-reload.gif;
-remotebg.gif;
-res.gif;
-roles.gif;
-rsrv.gif;
-rtrv.gif;
-sbkm.gif;
-sctr.gif;
+refresh.gif;
 show-all.gif;
 show-incomplete-problems.gif;
-spacer.gif;
-sprs.gif;
-src.gif;
-srvr.gif;
-start-navigation.gif;
-stat.gif;
-subm.gif;
-title.gif;
-vbkm.gif;
+star.gif;
 </filenames>
 </fileglob>
 <fileglob>
@@ -7490,6 +7648,7 @@ thumbsup_novote.png;
 thumbsdown.png;
 thumbsdown_gray.png;
 thumbsdown_novote.png;
+webpage.png;
 back.png;
 catalog.png;
 com.png;
@@ -7517,6 +7676,7 @@ reload.png;
 self_enroll.png;
 survey_rep.png;
 subdocs.png;
+tolastloc.png;
 uplusr.png;
 </filenames>
 </fileglob>
@@ -7535,9 +7695,11 @@ ccatconf.png;
 chat.png;
 comblock.png;
 contact-new.png;
+contact-new-22x22.png;
 coprplot.png;
 crsnew.png;
 dialog-information.png;
+docs-22x22.png;
 document-open.png;
 document-properties.png;
 download_sub.png;
@@ -7548,8 +7710,10 @@ edit-find-replace.png;
 edit-find.png;
 edit-mode-22x22.png;
 edit-redo.png;
+edit-redo-22x22.png;
 edit-select-all.png;
 edit-undo.png;
+edit-undo-22x22.png;
 emblem-photos.png;
 emblem-readonly.png;
 emblem-system.png;
@@ -7570,8 +7734,10 @@ ims.png;
 imsexport.png;
 link-new-22x22.png;
 list-add.png;
+list-add-22x22.png;
 log.png;
 mail-message-new.png;
+mail-message-new-22x22.png;
 mail-reply-all.png;
 mail-reply-sender.png;
 messalog.png;
@@ -7586,27 +7752,37 @@ preferences-desktop-remote-desktop.png;
 preferences-desktop-theme.png;
 preferences-desktop-wallpaper.png;
 preferences-system-windows.png;
+rcrs-22x22.png;
 receipt_number.png;
 recover.png;
 remotecontrol.png;
 resversion.png;
+role_hotlist-22x22.png;
+rsrv-22x22.png;
 save-22x22.png;
 scoreupfrm.png;
 selfenrl-queue.png;
+selfenrl-queue-22x22.png;
 sequence.png;
 simple.png;
 simpprob.png;
 start-here.png;
+start-here-22x22.png;
 subtimpl.png;
 syllabus.png;
 symbs.png;
 system-lock-screen.png;
 system-users.png;
+timer.png;
+trck-22x22.png;
 ungrade_sub.png;
 uplcrs.png;
 uploadscores.png;
 verify.png;
 view-mode-22x22.png;
+wishlist.png;
+wishlist-link.png;
+wishlist-link-lighter.png;
 </filenames>
 </fileglob>
 <file>
@@ -7617,13 +7793,6 @@ view-mode-22x22.png;
  file with an example math equation in it.
 </description>
 </file>
-<source>loncom/html/res/adm/pages/imgmaps.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/imgmaps.html</target>
-<categoryname>interface file</categoryname>
-<description>
-image maps for the LON-CAPA remote control
-</description>
-</file>
 <file>
 <source>loncom/html/res/adm/pages/index.html</source>
 <target dist='default'>home/httpd/html/res/adm/pages/index.html</target>
@@ -7632,14 +7801,6 @@ image maps for the LON-CAPA remote contr
 welcoming page to the LON-CAPA system upon login
 </description>
 </file>
-<file>
-<source>loncom/html/res/adm/pages/menu.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/menu.html</target>
-<categoryname>interface file</categoryname>
-<description>
-renders the HTML (including image maps) for the LON-CAPA remote control
-</description>
-</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/indexericons/</sourcedir>
@@ -7742,56 +7903,6 @@ world2.gif
 </filenames>
 </fileglob>
 <fileglob>
-<glob>*.gif</glob>
-<sourcedir>loncom/html/res/adm/pages/bookmarkmenu/</sourcedir>
-<targetdir dist='default'>home/httpd/html/res/adm/pages/bookmarkmenu/
-</targetdir>
-<categoryname>graphic file</categoryname>
-<description>
-icons used for the bookmark portion of the LON-CAPA user interface
-</description>
-<filenames>
-folder_anim.gif;
-folder_close.gif;
-folder_drag.gif;
-folder_new.gif;
-folder_open.gif;
-folder_pointer_closed.gif;
-folder_pointer_opened.gif;
-folder_static.gif;
-folder_trash.gif;
-folder_trash_hover.gif;
-left_bar.gif;
-link.gif;
-link_anim.gif;
-link_drag.gif;
-ll_corner.gif;
-lower_bar.gif;
-lr_corner.gif;
-pix.gif;
-right_bar.gif;
-toolbar_bg.gif;
-ul_corner.gif;
-upper_bar.gif;
-ur_corner.gif
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.html</glob>
-<sourcedir>loncom/html/res/adm/pages/bookmarkmenu/</sourcedir>
-<targetdir dist='default'>home/httpd/html/res/adm/pages/bookmarkmenu/
-</targetdir>
-<categoryname>interface file</categoryname>
-<description>
-associated with the scheme of displaying bookmarks
-</description>
-<filenames>
-bookmarkmenu_toolbar.html;
-blank.html;
-closechildren.html
-</filenames>
-</fileglob>
-<fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/html/res/adm/pages/reactionresponse/</sourcedir>
 <targetdir dist='default'>home/httpd/html/res/adm/pages/reactionresponse/</targetdir>
@@ -7808,15 +7919,6 @@ reaction_window.html
 </filenames>
 </fileglob>
 <file>
-<source>loncom/html/res/adm/pages/bookmarkmenu/bookmarklib.js</source>
-<target dist='default'>
-home/httpd/html/res/adm/pages/bookmarkmenu/bookmarklib.js</target>
-<categoryname>interface file</categoryname>
-<description>
-javascript for handling client-side interactions with bookmark interface
-</description>
-</file>
-<file>
 <source dist='default'>loncom/build/CHECKRPMS</source>
 <target dist='default'>usr/local/loncapa/bin/CHECKRPMS</target>
 <categoryname>system script</categoryname>
@@ -7930,7 +8032,7 @@ file that allows setuid password privile
 <file>
 <source>loncom/init.d/loncontrol</source>
 <target dist='default'>etc/rc.d/init.d/loncontrol</target>
-<target dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/init.d/loncontrol</target>
+<target dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/init.d/loncontrol</target>
 <categoryname>root script</categoryname>
 <description>
 Controls the launching/halting of lonc, lond, and lonsql processes.
@@ -7938,7 +8040,7 @@ Controls the launching/halting of lonc,
 </file>
 <link>
 <linkto dist='default'>etc/rc.d/init.d/loncontrol</linkto>
-<linkto dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/init.d/loncontrol</linkto>
+<linkto dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/init.d/loncontrol</linkto>
 <target dist='default'>
 etc/rc.d/rc0.d/K05loncontrol;
 etc/rc.d/rc1.d/K05loncontrol;
@@ -7948,7 +8050,7 @@ etc/rc.d/rc4.d/S95loncontrol;
 etc/rc.d/rc5.d/S95loncontrol;
 etc/rc.d/rc6.d/K05loncontrol
 </target>
-<target='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>
+<target='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>
 etc/rc.d/rc0.d/K05loncontrol;
 etc/rc.d/rc1.d/K05loncontrol;
 etc/rc.d/rc2.d/K05loncontrol;
@@ -7956,7 +8058,7 @@ etc/rc.d/rc3.d/S95loncontrol;
 etc/rc.d/rc5.d/S95loncontrol;
 etc/rc.d/rc6.d/K05loncontrol
 </target>
-<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>
+<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>
 etc/rc0.d/K05loncontrol;
 etc/rc1.d/K05loncontrol;
 etc/rc2.d/S95loncontrol;
@@ -7971,13 +8073,13 @@ symbolic links to /etc/rc.d/init.d/lonco
 </description>
 </link>
 
-<file dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 sles9 sles10 sles11">
+<file dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 sles9 sles10 sles11">
   <source>loncom/init.d/loncontrol</source>
   <target>etc/rc.d/</target>
   <description>
     setup loncontrol to run at boot
   </description>
-  <installscript dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 sles9 sles10 sles11">
+  <installscript dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 sles9 sles10 sles11">
 -c 'chkconfig --del loncontrol;chkconfig loncontrol 35;chkconfig --list loncontrol'
   </installscript>
   <dependencies>
@@ -8219,6 +8321,24 @@ resources for the duration of an exam.
   </description>
 </file>
 <file>
+<source>loncom/interface/lonwishlist.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonwishlist.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utilities to modify the wishlist (add new links and folders,
+edit, move, sort or delete existing links and folders).
+Links from the wishlist can be imported into courses.</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonwishlistdisplay.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonwishlistdisplay.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Module for displaying the wishlist.</description>
+<status>works/unverified</status>
+</file>
+<file>
   <source>loncom/automation/Autocreate.pl</source>Autocreate.pl
   <target dist='default'>home/httpd/perl/Autocreate.pl</target>
   <categoryname>script</categoryname>
@@ -8246,6 +8366,7 @@ login_count.pl;
 modify_config_files.pl;
 move_construction_spaces.pl;
 parse_scantron.pl;
+rebuild_db_from_hist.pl;
 seed_accesscount.pl;
 stress.pl;
 testkerberos.pl;