--- doc/loncapafiles/loncapafiles.lpml	2002/07/05 19:03:02	1.137
+++ doc/loncapafiles/loncapafiles.lpml	2002/08/01 20:33:21	1.153
@@ -3,7 +3,7 @@
 <!-- loncapafiles.lpml -->
 <!-- Scott Harrison -->
 
-<!-- $Id: loncapafiles.lpml,v 1.137 2002/07/05 19:03:02 harris41 Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.153 2002/08/01 20:33:21 stredwic Exp $ -->
 
 <!--
 
@@ -226,11 +226,6 @@ echo '**********************************
   <description>standard linux directory for configuration files</description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>etc/atalk</targetdir>
-  <categoryname>standard</categoryname>
-  <description>appletalk configuration files</description>
-</directory>
-<directory dist='default'>
   <targetdir dist='default'>etc/cron.d</targetdir>
   <categoryname>standard</categoryname>
   <description>standard linux directory for running time-based "jobs"
@@ -253,56 +248,50 @@ echo '**********************************
   </description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='redhat7 redhat7.1'>etc/samba</targetdir>
-  <categoryname>standard</categoryname>
-  <description>configuration directory for samba authentication
-  </description>
-</directory>
-<directory dist='default'>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
-  <targetdir dist='debian2.2'>etc/init.d</targetdir>
+  <targetdir dist='debian'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc0.d</targetdir>
+  <targetdir dist='debian'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc1.d</targetdir>
+  <targetdir dist='debian'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc2.d</targetdir>
+  <targetdir dist='debian'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc3.d</targetdir>
+  <targetdir dist='debian'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc4.d</targetdir>
+  <targetdir dist='debian'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc5.d</targetdir>
+  <targetdir dist='debian'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc6.d</targetdir>
+  <targetdir dist='debian'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
@@ -400,6 +389,11 @@ Used by lond parent to check if children
   <description>root of resource tree</description>
 </directory>
 <directory dist='default'>
+  <targetdir dist='default'>home/httpd/html/userfiles</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>root for user uploaded files</description>
+</directory>
+<directory dist='default'>
   <targetdir dist='default'>home/httpd/html/adm</targetdir>
   <categoryname>server readonly</categoryname>
   <description>unauthenticated resources</description>
@@ -413,10 +407,26 @@ Used by lond parent to check if children
   <targetdir dist='default'>home/httpd/html/adm/help</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation</description>
-  <build trigger='always run'>
-    perl loncom/build/help_graphics_converter.pl
-    perl doc/help/rebuildLabelHash.pl
-  </build>
+</directory>
+<directory dist='default'>
+  <targetdir dist='default'>home/httpd/html/adm/help/gif</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>online help documentation gif files</description>
+</directory>
+<directory dist='default'>
+  <targetdir dist='default'>home/httpd/html/adm/help/eps</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>online help documentation eps files</description>
+</directory>
+<directory dist='default'>
+  <targetdir dist='default'>home/httpd/html/adm/help/tex</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>online help documentation tex files</description>
+</directory>
+<directory dist='default'>
+  <targetdir dist='default'>home/httpd/html/adm/help/png</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>online help documentation png files</description>
 </directory>
 <directory dist='default'>
   <targetdir dist='default'>home/httpd/html/adm/help/lib/perl</targetdir>
@@ -516,15 +526,26 @@ are viewable over the world-wide web</de
 <directory dist='default'>
   <targetdir dist='default'>usr/lib/perl5/site_perl/5.005</targetdir>
   <targetdir dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0</targetdir>
-  <targetdir dist='debian2.2'>usr/local/lib/perl/5.6.0</targetdir>
+  <targetdir dist='debian'>usr/local/lib/perl/5.6.0</targetdir>
   <categoryname>standard</categoryname>
   <description>system perl tree (usually present on linux systems)
   </description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>usr/local/bin</targetdir>
+  <targetdir dist='default'>usr/local/loncapa/bin</targetdir>
+  <categoryname>standard</categoryname>
+  <description>local binary files for loncapa</description>
+</directory>
+<directory dist='default'>
+  <targetdir dist='default'>usr/local/loncapa/doc</targetdir>
   <categoryname>standard</categoryname>
-  <description>local binary files</description>
+  <description>local documentation files for loncapa</description>
+</directory>
+<directory dist='default'>
+  <targetdir dist='default'>usr/local/loncapa/doc/conf_examples</targetdir>
+  <categoryname>standard</categoryname>
+  <description>examples of configuration files for secondary
+ services</description>
 </directory>
 <directory dist='default'>
   <targetdir dist='default'>usr/local/man/man1</targetdir>
@@ -644,13 +665,18 @@ well as causing the Apache module to be
 </description>
 </file>
 <file>
-<source>loncom/publisher/thesaurus.dat</source>
-<target dist='default'>home/httpd/lonTabs/thesaurus.dat</target>
-<categoryname>static conf</categoryname>
+<source>loncom/thesaurus/thesaurus.db</source>
+<target dist='default'>home/httpd/lonTabs/thesaurus.db</target>
+<categoryname>system file</categoryname>
 <description>
-Custom Thesaurus file for LON-CAPA, in the format
-word@wordID@frequency@relatedwordID:frequency,relatedwordID:frequency,...
+Thesaurus database file to be built from loncom/thesaurus/rawkey.txt
 </description>
+<build trigger='run if dependencies change'>
+loncom/thesaurus/build_thesaurus_wrapper.sh
+</build>
+<dependencies>
+rawkey.txt
+</dependencies>
 </file>
 <file>
 <source>loncom/interface/mydesk.tab</source>
@@ -914,8 +940,7 @@ Basic auth password to access /lon-statu
 </file>
 <file>
 <source>loncom/smb.conf</source>
-<target dist='default'>etc/smb.conf</target>
-<target dist='redhat7 redhat7.1'>etc/samba/smb.conf</target>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/smb.conf</target>
 <categoryname>conf</categoryname>
 <description>
 configuration file to make LON-CAPA server file space accessible to network
@@ -949,6 +974,14 @@ Batch script for updating SQL metadata d
 </description>
 </file>
 <file>
+<source>loncom/metadata_database/cleanup_database.pl</source>
+<target dist='default'>home/httpd/perl/cleanup_database.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for removing temporary tables from the SQL metadata database.
+</description>
+</file>
+<file>
 <source>loncom/lonc</source>
 <target dist='default'>home/httpd/perl/lonc</target>
 <categoryname>script</categoryname>
@@ -1197,7 +1230,7 @@ The relevant conditions and metadata to
 </description>
 </file>
 <file>
-<source>loncom/misc/un_keyword.tab</source>
+<source>loncom/thesaurus/un_keyword.tab</source>
 <target dist='default'>home/httpd/html/res/adm/includes/un_keyword.tab</target>
 <categoryname>conf</categoryname>
 <description>
@@ -1251,6 +1284,33 @@ Edit handler for rat maps; TeX content h
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/londocs.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/londocs.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for course documents
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonchat.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonchat.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for chat
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonannounce.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonannounce.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up announcements and calendar
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/loncfile.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncfile.pm</target>
 <categoryname>handler</categoryname>
@@ -1268,6 +1328,255 @@ construction space menu.
 The .tex file help handler.
 </description>
 <status>works/unverified</status>
+<build trigger='always run'>loncom/build/buildHelp.sh</build>
+</file>
+<file>
+<source>/doc/help/author.manual.ps</source>
+<target dist='default'>home/httpd/html/adm/help/author.manual.ps</target>
+<categoryname>handler</categoryname>
+<description>
+The rendered Author's Manual
+</description>
+<status>works/unverified</status>
+</file>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/gif/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/gif/</targetdir>
+<categoryname>handler</categoryname>
+<description>
+Gif files for the help system
+</description>
+<filenames>
+authorRemote.gif
+constructionSpace.gif
+constructionSpaceForPublishing.gif
+creatingANewCourse.gif
+creatingNewProblemResource.gif
+dynamic_piecewise.gif
+dynamic_piecewise2.gif
+dynamic_plot.gif
+dynamic_plot2.gif
+formulaResponse.gif
+login.gif
+mapAdvancedEditorNew.gif
+mapClickedStart.gif
+mapEditFirstClick.gif
+mapEditInitial.gif
+mapEditingButton.gif
+mapEditorDirectoryBrowser.gif
+mapEditorResourceChosen.gif
+mapEditorSelection.gif
+mapInsertResource.gif
+mapNewResource.gif
+mapSecondWindowSecondResource.gif
+mapSimpleEditor.gif
+mapStraightened.gif
+mapTwoResources.gif
+numericalResponse1.gif
+numericalResponseEditor.gif
+numericalResponseSlopeProblem.gif
+numericalResponseVarInText.gif
+optionResponseEditing.gif
+optionResponseProblem.gif
+publishMetadata.gif
+radioResponse2.gif
+radioResponseHint.gif
+smallHelp.gif
+spreadsheet_hierarchy.gif
+stringResponseEditor.gif
+studentInterface.gif
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/eps/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/eps/</targetdir>
+<categoryname>handler</categoryname>
+<description>
+EPS files for the help system
+</description>
+<filenames>
+authorRemote.eps
+constructionSpace.eps
+constructionSpaceForPublishing.eps
+creatingANewCourse.eps
+creatingNewProblemResource.eps
+dynamic_piecewise.eps
+dynamic_piecewise2.eps
+dynamic_plot.eps
+dynamic_plot2.eps
+formulaResponse.eps
+login.eps
+mapAdvancedEditorNew.eps
+mapClickedStart.eps
+mapEditFirstClick.eps
+mapEditInitial.eps
+mapEditingButton.eps
+mapEditorDirectoryBrowser.eps
+mapEditorResourceChosen.eps
+mapEditorSelection.eps
+mapInsertResource.eps
+mapNewResource.eps
+mapSecondWindowSecondResource.eps
+mapSimpleEditor.eps
+mapStraightened.eps
+mapTwoResources.eps
+numericalResponse1.eps
+numericalResponseEditor.eps
+numericalResponseSlopeProblem.eps
+numericalResponseVarInText.eps
+optionResponseEditing.eps
+optionResponseProblem.eps
+publishMetadata.eps
+radioResponse2.eps
+radioResponseHint.eps
+smallHelp.eps
+spreadsheet_hierarchy.eps
+stringResponseEditor.eps
+studentInterface.eps
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/tex/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/tex/</targetdir>
+<categoryname>handler</categoryname>
+<description>
+Tex files for the help system
+</description>
+<filenames>
+About_Authors_Manual.tex
+About_Numerical_and_Formula_Response.tex
+Ambiguous_Reference.tex
+Author_LON-CAPA_Introduction.tex
+Author_Manual_Title_Page.tex
+Author_Numerical_and_Formula.tex
+Author_Remote_Control.tex
+Authoring_Adding_Pictures.tex
+Authoring_Dynamic_Plot.tex
+Authoring_HTML_vs_Tex.tex
+Authoring_M_Tag.tex
+Authoring_Piecewise_Plot.tex
+Calling_Functions.tex
+Coauthor.tex
+Construction_Space_Overview.tex
+Course_Add_Student.tex
+Course_Chart_To_Excel.tex
+Course_Convert_To_CSV.tex
+Course_Create_Class_List.tex
+Course_Critical_Message.tex
+Course_Deleting.tex
+Course_Disable_Discussion.tex
+Course_Discussion_Board.tex
+Course_Drop_Student.tex
+Course_Edit_Content.tex
+Course_Feedback_Addresses.tex
+Course_Homework_Performance_Overview.tex
+Course_Message_Access.tex
+Course_Problem_Weight.tex
+Course_Setting_Parameters.tex
+Course_Student_Grade_Override.tex
+Course_Student_Work.tex
+Course_Toplevel_Seq.tex
+Creating_A_Course_Intro.tex
+Creating_New_Content_Pages.tex
+Creating_Online_Problems.tex
+Creating_Radio_Response_Problems.tex
+Foils.tex
+Formula_Response_Example.tex
+Formula_Response_Limitations.tex
+Formula_Response_Problems.tex
+Formula_Response_Sampling.tex
+Formula_Tolerance.tex
+How_To_Edit_Existing_Content_Pages.tex
+Latex_Footer.tex
+Latex_Header.tex
+Login_To_LON-CAPA.tex
+Metadata_Description.tex
+Numerical_Response_Advanced_Example.tex
+Numerical_Response_Format.tex
+Numerical_Response_Intro.tex
+Numerical_Response_Introduction.tex
+Numerical_Response_Parts_A.tex
+Numerical_Response_Parts_B.tex
+Numerical_Response_Problems.tex
+Numerical_Response_Randomization.tex
+Numerical_Response_Simple_Example.tex
+Numerical_Response_Tutorial_A.tex
+Numerical_Response_Units.tex
+Option_Response_Concept_Group_Example.tex
+Option_Response_Matching_Example.tex
+Option_Response_Problem_Creation.tex
+Option_Response_Problem_Figure.tex
+Option_Response_Problem_Parts.tex
+Option_Response_Problems.tex
+Option_Response_Simple.tex
+Problem_Editor_Testing_Area.tex
+Problem_Editor_XML_Index.tex
+Problem_Types.tex
+Publishing_A_Resource.tex
+Publishing_Author_Tutorial_Segue.tex
+Publishing_Copyright.tex
+Publishing_Intro.tex
+Publishing_Keywords.tex
+Radio_Response_Problems.tex
+Radio_Response_Randomization.tex
+Resource_Types.tex
+Script_Tutorial_Intro.tex
+Scripting_Help.tex
+Sequence_Advanced_Editor_Creation.tex
+Sequence_Definition.tex
+Sequence_Editor_Selection.tex
+Sequence_Page_Maps.tex
+Sequence_Simple_Editor_Creation.tex
+Sequence_Top-Level.tex
+Significant_Figures.tex
+Spreadsheet_About.tex
+Spreadsheet_Alternative_View.tex
+Spreadsheet_Changes_To_Grading.tex
+Spreadsheet_Col_Sum.tex
+Spreadsheet_Completely_Recalc.tex
+Spreadsheet_Empty_Rows.tex
+Spreadsheet_Export_Row.tex
+Spreadsheet_Functions.tex
+Spreadsheet_Import_Values.tex
+Spreadsheet_Levels.tex
+Spreadsheet_Lists.tex
+Spreadsheet_Manual_Title_Page.tex
+Spreadsheet_Max_Depth_Exceeded.tex
+Spreadsheet_OOO_Rows.tex
+Spreadsheet_Op_On_All_Problem_Parts.tex
+Spreadsheet_Parms.tex
+Spreadsheet_Problem_Weight.tex
+Spreadsheet_Ranges.tex
+Spreadsheet_Specifying_Cells.tex
+Spreadsheet_Student_Visible.tex
+Spreadsheet_Symbolic_Names.tex
+Spreadsheet_Template_Row.tex
+Spreadsheet_Ternary_Operator.tex
+Spreadsheet_Tries.tex
+String_Response_Problem_Creation.tex
+String_Response_Problems.tex
+Tolerance.tex
+Variable_Naming_Conventions.tex
+Variable_Tutorial_A.tex
+Variables_in_Scripts.tex
+Variables_in_the_Answer_Block.tex
+Variables_in_the_Text_Block.tex
+</filenames>
+</fileglob>
+<file>
+<source>loncom/html/adm/help/fragmentLabels.gdbm</source>
+<target dist='default'>home/httpd/html/adm/help/fragmentLabels.gdbm</target>
+<categoryname>handler</categoryname>
+<description>
+A gdbm file containing a label->tex file hash.
+</description>
+<status>works/unverified</status>
 </file>
 <file>
 <source>loncom/interface/lonstatistics.pm</source>
@@ -1279,6 +1588,33 @@ Handler to show statistics on solving LO
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/statistics/lonproblemstatistics.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonproblemstatistics.pm</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the Problem Statistcs web pages.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonproblemanalysis.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonproblemanalysis.pm</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the Problem Analysis web pages.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonstudentassessment.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstudentassessment.pm</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the Student Assessment/Chart web pages.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/londiff.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londiff.pm</target>
 <categoryname>handler</categoryname>
@@ -1525,11 +1861,19 @@ them roles.
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonchart.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonchart.pm</target>
+<source>loncom/interface/lonhtmlcommon.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonhtmlcommon.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains a set of functions that generate html controls and data layouts
+</description>
+</file>
+<file>
+<source>loncom/interface/loncoursedata.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncoursedata.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Produces simple LectureOnline-like student assessment performance chart
+Common functions for handling student course data (download and process)
 </description>
 </file>
 <file>
@@ -1710,6 +2054,15 @@ Handles a searchable catalogue.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonmysql.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonmysql.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Provides utility functions for creating and accessing mysql database tables.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/man/Apache__lonsearchcat.3</source>
 <target dist='default'>usr/man/man3/Apache::lonsearchcat.3</target>
 <categoryname>doc</categoryname>
@@ -2218,6 +2571,15 @@ access handler for file transfers
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/lontokacc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lontokacc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+simple handler for token-based access control
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/man/Apache__lonracc.3</source>
 <target dist='default'>usr/man/man3/Apache::lonracc.3</target>
 <categoryname>doc</categoryname>
@@ -3059,9 +3421,11 @@ Define unit prefixing and conversion for
 8.gif;
 9.gif;
 a.gif;
+anno.gif;
 anot.gif;
 b.gif;
 back.gif;
+bchat.gif;
 bkm.gif;
 brws.gif;
 c.gif;
@@ -3076,6 +3440,7 @@ cprv.gif;
 cstr.gif;
 d.gif;
 dempty.gif;
+docs.gif;
 e.gif;
 egrd.gif;
 empty.gif;
@@ -3329,7 +3694,7 @@ javascript for handling client-side inte
 </file>
 <file>
 <source>loncom/build/check-rpms</source>
-<target dist='default'>usr/local/bin/check-rpms</target>
+<target dist='default'>usr/local/loncapa/bin/check-rpms</target>
 <categoryname>root script</categoryname>
 <description>
 compare installed rpms with up-to-date distribution
@@ -3436,7 +3801,7 @@ symbolic links to /etc/rc.d/init.d/lonco
 </link>
 <file>
 <source>loncom/atalk/config</source>
-<target dist='default'>etc/atalk/config</target>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/config</target>
 <categoryname>conf</categoryname>
 <description>
 configuration file to make LON-CAPA server file space accessible to