--- doc/loncapafiles/loncapafiles.lpml	2003/04/11 18:17:26	1.231
+++ doc/loncapafiles/loncapafiles.lpml	2003/11/24 22:03:12	1.300
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.231 2003/04/11 18:17:26 bowersj2 Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.300 2003/11/24 22:03:12 albertel Exp $ -->
 
 <!--
 
@@ -379,6 +379,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lib/perl/Apache/localize</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>location of LON-CAPA MakeText translation files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl/HTML</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of HTML specific perl module fixes and additions
@@ -459,6 +465,18 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jme</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JME support files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/helper</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>XML specifications for helpers</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/gif</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation gif files</description>
@@ -545,6 +563,13 @@ LON-CAPA system.</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/lib/templates</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Resource library
+  </description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/includes</targetdir>
   <categoryname>server readonly</categoryname>
   <description>files useful for including within customized scripting
@@ -572,6 +597,12 @@ are viewable over the world-wide web</de
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/adm/pages/reactionresponse</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>web user interface resources</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonLCDfont</targetdir>
   <categoryname>server readonly</categoryname>
   <description>LCD font for remote control</description>
@@ -619,6 +650,7 @@ are viewable over the world-wide web</de
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/lib/perl5/site_perl/5.005</targetdir>
   <targetdir dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0</targetdir>
+  <targetdir dist='redhat8 redhat9'>usr/lib/perl5/site_perl/5.8.0</targetdir>
   <targetdir dist='debian'>usr/local/lib/perl/5.6.0</targetdir>
   <categoryname>standard</categoryname>
   <description>system perl tree (usually present on linux systems)
@@ -777,7 +809,7 @@ well as causing the Apache module to be
 <description>
 Thesaurus database file to be built from loncom/thesaurus/rawkey.txt
 </description>
-<build trigger='run if dependencies change'>
+<build trigger='always run'>
 loncom/thesaurus/build_thesaurus_wrapper.sh
 </build>
 <dependencies>
@@ -818,6 +850,30 @@ parameter.
 </description>
 </file>
 <file>
+<source>loncom/cgi/decompress.pl</source>
+<target dist='default'>home/httpd/cgi-bin/decompress.pl</target>
+<categoryname>script</categoryname>
+<description>
+Decompresses an archive into its files inside of the construction space
+</description>
+</file>
+<file>
+<source>loncom/cgi/takeoffline.pl</source>
+<target dist='default'>home/httpd/cgi-bin/takeoffline.pl</target>
+<categoryname>script</categoryname>
+<description>
+Take machine offline
+</description>
+</file>
+<file>
+<source>loncom/cgi/takeonline.pl</source>
+<target dist='default'>home/httpd/cgi-bin/takeonline.pl</target>
+<categoryname>script</categoryname>
+<description>
+Take machine online
+</description>
+</file>
+<file>
 <source>loncom/cgi/thumbnail.gif</source>
 <target dist='default'>home/httpd/cgi-bin/thumbnail.gif</target>
 <categoryname>script</categoryname>
@@ -834,6 +890,14 @@ utility cgi script to view status of clu
 </description>
 </file>
 <file>
+<source>loncom/cgi/translator.pl</source>
+<target dist='default'>home/httpd/cgi-bin/translator.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to enter translations
+</description>
+</file>
+<file>
 <source>loncom/build/system_dependencies/perltest.pl</source>
 <target dist='default'>home/httpd/cgi-bin/perltest.pl</target>
 <categoryname>script</categoryname>
@@ -850,6 +914,14 @@ utility cgi script to view status of per
 </description>
 </file>
 <file>
+  <source>loncom/cgi/loncgi.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/loncgi.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides a common interface to LON-CAPA cookies and environment.
+  </description>
+</file>
+<file>
 <source>loncom/cgi/graph.png</source>
 <target dist='default'>home/httpd/cgi-bin/graph.png</target>
 <categoryname>script</categoryname>
@@ -934,6 +1006,38 @@ out all records in "|"-separated format.
 To be used by very simple harvesting engines.
 </description>
 </file>
+<file>
+<source>loncom/homework/simpleproblem.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/simpleproblem.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for DOCS "Simple Problem"
+</description>
+</file>
+<file>
+<source>loncom/homework/simpleproblem.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/simpleproblem.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for DOCS "Simple Problem"
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/examupload.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/examupload.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for score upload
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/examupload.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/examupload.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for score upload
+</description>
+</file>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/homework/templates/</sourcedir>
@@ -948,8 +1052,14 @@ blank.library;
 blank.library.meta;
 blank.problem;
 blank.problem.meta;
+ClickImageExample.problem;
+ClickImageExample.problem.meta;
 Essay.problem;
 Essay.problem.meta;
+examupload.problem;
+examupload.problem.meta;
+man1.jpg;
+man1.jpg.meta;
 numerical.problem;
 numerical.problem.meta;
 Plot.problem;
@@ -1005,8 +1115,8 @@ Built from Glabel.java.  Still working o
 </note>
 </file>
 <file>
-<source>loncom/interface/default.assesscalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.assesscalc
+<source>loncom/interface/spreadsheet/default_assesscalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_assesscalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -1014,8 +1124,8 @@ Default spreadsheet for individual asses
 </description>
 </file>
 <file>
-<source>loncom/interface/default.studentcalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.studentcalc
+<source>loncom/interface/spreadsheet/default_studentcalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_studentcalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -1023,8 +1133,8 @@ Default spreadsheet for assessment of st
 </description>
 </file>
 <file>
-<source>loncom/interface/default.classcalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.classcalc
+<source>loncom/interface/spreadsheet/default_classcalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_classcalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -1049,7 +1159,7 @@ Descriptive list of abbreviations used i
 and privileges available in the network with function
 </description>
 </file>
-<file>
+<file type="private">
 <source>loncom/hosts.tab</source>
 <target dist='default'>home/httpd/lonTabs/hosts.tab</target>
 <categoryname>static conf</categoryname>
@@ -1058,7 +1168,7 @@ List of all machines in the LON-CAPA net
 <tt>lonDefDomain</tt> and <u>IP address</u>.
 </description>
 </file>
-<file>
+<file type="private">
 <source>loncom/domain.tab</source>
 <target dist='default'>home/httpd/lonTabs/domain.tab</target>
 <categoryname>static conf</categoryname>
@@ -1089,7 +1199,7 @@ in <tt>access.conf</tt>
 <file>
 <source>loncom/htpasswd</source>
 <target dist='default'>home/httpd/lonTabs/htpasswd</target>
-<categoryname>conf</categoryname>
+<categoryname>static conf</categoryname>
 <description>
 Basic auth password to access /lon-status and /server-status
 </description>
@@ -1414,6 +1524,15 @@ Interface file for responding to imprope
 </description>
 </file>
 <file>
+<source>loncom/html/adm/notinit.html</source>
+<target dist='default'>home/httpd/html/adm/notinit.html</target>
+<categoryname>interface file</categoryname>
+<description>
+Interface file for responding to accessing uploaded resources without
+re-initializing course.
+</description>
+</file>
+<file>
 <source>loncom/html/adm/overloaded.txt</source>
 <target dist='default'>home/httpd/html/adm/overloaded.txt</target>
 <categoryname>interface file</categoryname>
@@ -1554,6 +1673,15 @@ Handler to put up syllabus
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/homework/lonsimpleproblemedit.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsimpleproblemedit.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to set parameters for simple homework problems
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonsimplepage.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonsimplepage.pm</target>
 <categoryname>handler</categoryname>
@@ -1655,17 +1783,6 @@ manual online, with a somewhat clumsy in
 <status>works/unverified</status>
 </file>
 <file>
-<source>doc/help/course.instructor.access.tex</source>
-<target dist='default'>home/httpd/html/adm/help/tex/course.instructor.access.tex
-</target>
-<categoryname>interface file</categoryname>
-<description>
-The pseudo-LaTeX file to allow people to read the course instructor's
-manual online, with a somewhat clumsy interface.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>doc/help/author.manual.ps</source>
 <target dist='default'>home/httpd/html/adm/help/author.manual.ps</target>
 <categoryname>interface file</categoryname>
@@ -1723,24 +1840,6 @@ The PDF Course Manual
 </description>
 <status>works/unverified</status>
 </file>
-<file>
-<source>doc/help/course.instructor.ps</source>
-<target dist='default'>home/httpd/html/adm/help/course.instructor.ps</target>
-<categoryname>interface file</categoryname>
-<description>
-The postscript Course Instructor Manual
-</description>
-<status>works/unverified</status>
-</file>
-<file>
-<source>doc/help/course.instructor.pdf</source>
-<target dist='default'>home/httpd/html/adm/help/course.instructor.pdf</target>
-<categoryname>interface file</categoryname>
-<description>
-The PDF Course Instructor Manual
-</description>
-<status>works/unverified</status>
-</file>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/html/adm/help/gif/</sourcedir>
@@ -1856,22 +1955,62 @@ Tex files for the help system
 </description>
 <filenames>
 About_Authors_Manual.tex;
+About_Communication.tex;
+About_Developers_Manual.tex;
 About_Numerical_and_Formula_Response.tex;
 Ambiguous_Reference.tex;
+Analyze_Problem.tex;
+Annotation.tex;
+Authentication.tex;
 Author_LON-CAPA_Introduction.tex;
 Author_Manual_Title_Page.tex;
 Author_Numerical_and_Formula.tex;
 Author_Remote_Control.tex;
 Authoring_Adding_Pictures.tex;
+Authoring_DataResponse.tex;
 Authoring_Dynamic_Plot.tex;
+Authoring_ExternalResponse.tex;
+Authoring_Foil_Structure_Tags.tex;
 Authoring_HTML_vs_Tex.tex;
+Authoring_Hint_Tags.tex;
+Authoring_ImageResponse.tex;
+Authoring_Input_Tags.tex;
+Authoring_Internal_Tags.tex;
 Authoring_M_Tag.tex;
+Authoring_NumericalResponse.tex;
+Authoring_OptionResponse.tex;
+Authoring_Output_Tags.tex;
+Authoring_Pictures_EPS.tex;
 Authoring_Piecewise_Plot.tex;
+Authoring_RadiobuttonResponse.tex;
+Authoring_Response_Attributes.tex;
+Authoring_Response_Tag_Intro.tex;
+Authoring_Responseparam_Parameter.tex;
+Authoring_Scripting_Tags.tex;
+Authoring_Structure_Tags.tex;
+Authoring_XML_Intro.tex;
+Bookmarks.tex;
+Bugzilla.tex;
+CAPA_LON-CAPA_function_diffs.tex;
+Caching.tex;
+Calendar_Add_Announcement.tex;
+Calendar_Remove_Announcement.tex;
 Calling_Functions.tex;
+Cascading_Parameters.tex;
+Change_Colors.tex;
+Change_Password.tex;
+Chart_Description.tex;
+Chart_Output_Data.tex;
+Chart_Output_Formats.tex;
+Chatting.tex;
 Coauthor.tex;
 Construction_Space_Overview.tex;
+Course_Add_Other.tex;
 Course_Add_Student.tex;
+Course_Broadcast_Message.tex;
+Course_Change_Privileges.tex;
 Course_Chart_To_Excel.tex;
+Course_Chat.tex;
 Course_Convert_To_CSV.tex;
 Course_Create_Class_List.tex;
 Course_Critical_Message.tex;
@@ -1880,30 +2019,55 @@ Course_Disable_Discussion.tex;
 Course_Discussion_Board.tex;
 Course_Drop_Student.tex;
 Course_Edit_Content.tex;
+Course_Editing_Custom_Roles.tex;
+Course_Extending_Due_Dates.tex;
+Course_Face_To_Face_Records.tex;
 Course_Feedback_Addresses.tex;
 Course_Homework_Performance_Overview.tex;
 Course_Manual_Title_Page.tex;
+Course_Manually_Grade_Problem.tex;
+Course_Maximum_Collaborators.tex;
 Course_Message_Access.tex;
+Course_Modify_Student_Data.tex;
+Course_Parameter_Levels.tex;
 Course_Problem_Weight.tex;
+Course_Set_Start_End_Date.tex;
 Course_Setting_Parameters.tex;
 Course_Student_Grade_Override.tex;
 Course_Student_Work.tex;
 Course_Toplevel_Seq.tex;
+Course_User_Evaluation.tex;
+Course_User_Parameter.tex;
+Course_View_Class_List.tex;
+Create_Course.tex;
 Creating_A_Course_Intro.tex;
 Creating_New_Content_Pages.tex;
 Creating_Online_Problems.tex;
 Creating_Radio_Response_Problems.tex;
+Developer_Manual_Title_Page.tex;
+Developer_Tutorial.tex;
+Docs_About_Bulletin_Board.tex;
+Docs_About_My_Personal_Info.tex;
+Docs_About_Simple_Page.tex;
+Docs_About_Syllabus.tex;
 Docs_Adding_Course_Doc.tex;
 Docs_Adding_External_Resource.tex;
 Docs_Adding_Folders.tex;
+Docs_Adding_Syllabus.tex;
+Docs_Alternatives.tex;
 Docs_Creating_From_Template.tex;
+Docs_Editing_Templated_Pages.tex;
 Docs_Importing_LON-CAPA_Resource.tex;
+Docs_Load_Map.tex;
 Docs_Main_Course_Documents.tex;
 Docs_Navigate_Content.tex;
 Docs_Overview.tex;
+Docs_Score_Upload_Form.tex;
 Docs_Supplemental.tex;
 Docs_Uploading_From_Harddrive.tex;
+Finding_Resources.tex;
 Foils.tex;
+Formula_Response_Adv_Intro.tex;
 Formula_Response_Example.tex;
 Formula_Response_Limitations.tex;
 Formula_Response_Problems.tex;
@@ -1911,9 +2075,18 @@ Formula_Response_Sampling.tex;
 Formula_Tolerance.tex;
 General_Intro.tex;
 Greek_Symbols.tex;
+Guts_Apache.tex;
+Guts_Apache_Env.tex;
+Guts_Apache_Modules.tex;
+Guts_Authentication.tex;
+Guts_Authoring.tex;
+Guts_Coding_Guidelines.tex;
+Guts_Course_Dir.tex;
+Guts_User_Dir.tex;
 How_To_Edit_Existing_Content_Pages.tex;
 Latex_Footer.tex;
 Latex_Header.tex;
+Leaving_Feedback.tex;
 Login_To_LON-CAPA.tex;
 Metadata_Description.tex;
 Navmap_Host_Down.tex;
@@ -1937,8 +2110,14 @@ Option_Response_Problems.tex;
 Option_Response_Simple.tex;
 Other_Symbols.tex;
 Part_Tag_Edit_Help.tex;
+Personal_Info_Page.tex;
+Physical_Units.tex;
+Prefs_Forwarding.tex;
+Prefs_Screen_Name_Nickname.tex;
+Print_Resource.tex;
 Problem_Editor_Testing_Area.tex;
 Problem_Editor_XML_Index.tex;
+Problem_LON-CAPA_Functions.tex;
 Problem_Types.tex;
 Publishing_A_Resource.tex;
 Publishing_Author_Tutorial_Segue.tex;
@@ -1948,9 +2127,16 @@ Publishing_Keywords.tex;
 Quick_Grades_Possibly_Correct.tex;
 Radio_Response_Problems.tex;
 Radio_Response_Randomization.tex;
+Ranking_Problems.tex;
+Receipt.tex;
+Resource_Discussion.tex;
 Resource_Types.tex;
+Roles_About.tex;
+Script_Functions.tex;
 Script_Tutorial_Intro.tex;
+Script_Variables.tex;
 Scripting_Help.tex;
+Sending_Email.tex;
 Sequence_Advanced_Editor_Creation.tex;
 Sequence_Definition.tex;
 Sequence_Editor_Selection.tex;
@@ -1959,36 +2145,44 @@ Sequence_Simple_Editor_Creation.tex;
 Sequence_Top-Level.tex;
 Significant_Figures.tex;
 Spreadsheet_About.tex;
-Spreadsheet_Alternative_View.tex;
-Spreadsheet_Changes_To_Grading.tex;
-Spreadsheet_Col_Sum.tex;
-Spreadsheet_Completely_Recalc.tex;
-Spreadsheet_Empty_Rows.tex;
+Spreadsheet_Calculation.tex;
+Spreadsheet_Calculation_Time.tex;
+Spreadsheet_Cell_Editing.tex;
+Spreadsheet_Editing.tex;
 Spreadsheet_Export_Row.tex;
+Spreadsheet_Files.tex;
 Spreadsheet_Functions.tex;
-Spreadsheet_Import_Values.tex;
+Spreadsheet_Hierarchy.tex;
+Spreadsheet_HowTo_Assessments.tex;
+Spreadsheet_HowTo.tex;
+Spreadsheet_Layout.tex;
 Spreadsheet_Levels.tex;
-Spreadsheet_Lists.tex;
 Spreadsheet_Max_Depth_Exceeded.tex;
-Spreadsheet_OOO_Rows.tex;
-Spreadsheet_Op_On_All_Problem_Parts.tex;
 Spreadsheet_Parms.tex;
 Spreadsheet_Problem_Weight.tex;
-Spreadsheet_Ranges.tex;
-Spreadsheet_Specifying_Cells.tex;
+Spreadsheet_Referencing_Cells.tex;
+Spreadsheet_Referencing_Parameters.tex;
+Spreadsheet_Row_Numbers.tex;
+Spreadsheet_Student_View.tex;
 Spreadsheet_Student_Visible.tex;
-Spreadsheet_Symbolic_Names.tex;
 Spreadsheet_Template_Row.tex;
 Spreadsheet_Ternary_Operator.tex;
 Spreadsheet_Tries.tex;
 String_Response_Problem_Creation.tex;
 String_Response_Problems.tex;
+Syllabus_ExtLink.tex;
+Syllabus_URLs.tex;
 Tolerance.tex;
+Uploaded_Templates_PublicView.tex;
+Uploaded_Templates_TextBoxes.tex;
 Variable_Naming_Conventions.tex;
 Variable_Tutorial_A.tex;
 Variables_in_Scripts.tex;
 Variables_in_the_Answer_Block.tex;
-Variables_in_the_Text_Block.tex
+Variables_in_the_Text_Block.tex;
+What_Is_LON-CAPA.tex;
+Why_LON-CAPA.tex;
+all_functions_table.tex;
 </filenames>
 </fileglob>
 <file>
@@ -2035,7 +2229,17 @@ The module that generate the html for th
 </target>
 <categoryname>handler</categoryname>
 <description>
-The module that generate the html for the Problem Analysis web pages.
+This module provides detailed analysis and raw data for submissions of various problem types.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonsubmissiontimeanalysis.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsubmissiontimeanalysis.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+This module produces plots of the times of students attempts on an assessment.
 </description>
 <status>works/unverified</status>
 </file>
@@ -2321,6 +2525,38 @@ Contains a set of functions that generat
 </description>
 </file>
 <file>
+<source>loncom/localize/lonlocal.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonlocal.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains the &mt access function to Locale::Maketext
+</description>
+</file>
+<file>
+<source>loncom/localize/localize.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/localize.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Localization class for Locale::Maketext
+</description>
+</file>
+<fileglob>
+<glob>*.pm</glob>
+<sourcedir>loncom/localize/localize/</sourcedir>
+<targetdir dist='default'>
+home/httpd/lib/perl/Apache/localize/</targetdir>
+<categoryname>static conf</categoryname>
+<description>
+Translation files.
+</description>
+<filenames>
+de.pm;
+pt.pm;
+ja.pm;
+tr.pm;
+</filenames>
+</fileglob>
+<file>
 <source>loncom/interface/loncoursedata.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncoursedata.pm</target>
 <categoryname>handler</categoryname>
@@ -2400,6 +2636,43 @@ assignment.
 </description>
 <status>works/unverified</status>
 </file>
+
+<file>
+  <source>loncom/homework/chemresponse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/chemresponse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handle the tags organicresponse/structure and reationresponse
+  </description>
+  <status>works/unverified</status>
+</file>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jme/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jme/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JME files, for editing organic structures
+  </description>
+  <filenames>
+JME.jar;
+jme.gif;
+jme_help.html;
+nitro.gif;
+smiles.gif
+  </filenames>
+</fileglob>
+
+<file>
+  <source>loncom/homework/convertjme.pl</source>
+  <target dist='default'>home/httpd/cgi-bin/convertjme.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Dynamically converts JME strings into either a png or ps file.
+  </description>
+</file>
+
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -2513,7 +2786,25 @@ echo 'pod2html lonnavmaps.pm'
 <target dist='default'>home/httpd/lib/perl/Apache/lonhelper.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Wizard framework.
+Helper framework.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/helper/parameter.helper</source>
+<target dist='default'>home/httpd/html/adm/helper/parameter.helper</target>
+<categoryname>handler</categoryname>
+<description>
+Parameter setting helper.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/helper/course.initialization.helper</source>
+<target dist='default'>home/httpd/html/adm/helper/course.initialization.helper</target>
+<categoryname>handler</categoryname>
+<description>
+Course initialization helper.
 </description>
 <status>works/unverified</status>
 </file>
@@ -2595,6 +2886,15 @@ echo 'pod2html lonsearchcat.pm'
 </dependencies>
 </file>
 <file>
+<source>loncom/interface/lonmanagekeys.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonmanagekeys.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows users with "mky" privileges to generate and manage course access keys.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/londropadd.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londropadd.pm</target>
 <categoryname>handler</categoryname>
@@ -2631,13 +2931,49 @@ problems and assignments.
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonspreadsheet.pm</source>
+<source>loncom/interface/spreadsheet/lonspreadsheet.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonspreadsheet.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Spreadsheets are completely web-based.
-They exist on the level of a whole course, a student, and individual
-assessments.
+The top level interface for the display and editing of spreadsheets.  There
+are three levels of spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/Spreadsheet.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/Spreadsheet.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the parent object of each spreadsheet type (classcalc, studentcalc,
+assesscalc).
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/classcalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/classcalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the course level spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/studentcalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/studentcalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the student level spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/assesscalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/assesscalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the assessment level spreadsheet.
 </description>
 <status>works/unverified</status>
 </file>
@@ -2964,6 +3300,15 @@ implements &lt;script&gt;, &lt;scriptlib
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/languagetags.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/languagetags.pm</target>
+<categoryname>handler</categoryname>
+<description>
+implements &lt;mt&gt;
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/homework/randomlylabel.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/randomlylabel.pm</target>
 <categoryname>handler</categoryname>
@@ -3055,15 +3400,24 @@ a way that does not threaten the operati
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/auth/localauth.pm</source>
-<target dist='default'>home/httpd/lib/perl/localauth-std.pm</target>
-<categoryname>handler</categoryname>
-<description>
+  <source>loncom/auth/localauth.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localauth-std.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
 Local authentication mechanism.  The target file is meant as a template
 for a localauth.pm file.  The target file with the -std suffix is not
 used directly by any software program; it is just a template file.
-</description>
-<status>works/unverified</status>
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/localauth.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localauth.pm</target>
+  <categoryname>conf</categoryname>
+  <description>
+Local authentication mechanism.  
+  </description>
+  <status>works/unverified</status>
 </file>
 <file>
 <source>loncom/auth/lonacc.pm</source>
@@ -3392,6 +3746,12 @@ loncom/build/pod2html.sh ../lonnet/perl/
 <description>bumps to login</description>
 </file>
 <file>
+<source>loncom/html/index.html</source>
+<target dist='default'>home/httpd/html/origindex.html</target>
+<categoryname>interface file</categoryname>
+<description>bumps to login, backup for takeonline</description>
+</file>
+<file>
 <source>loncom/html/favicon.ico</source>
 <target dist='default'>home/httpd/html/favicon.ico</target>
 <categoryname>interface file</categoryname>
@@ -3647,7 +4007,11 @@ logos and general widget icons
 <filenames>
 SMETE_white.gif;
 aboutlon.gif;
+aboutlon_pt.gif;
+aboutlon_de.gif;
 accessbutton.gif;
+accessbutton_pt.gif;
+accessbutton_de.gif;
 angry.gif;
 arrow_up.gif;
 bigsmile.gif;
@@ -3691,6 +4055,7 @@ jar_big.gif;
 jpg.gif;
 jpg_big.gif;
 latex.gif;
+library.gif;
 lipsrsealed.gif;
 lite.gif;
 liteani.gif;
@@ -3705,6 +4070,7 @@ lonlogo.gif;
 lonlogos.gif;
 lowerleft.gif;
 lowerright.gif;
+minilogo.gif;
 meta.gif;
 meta_big.gif;
 mov.gif;
@@ -3712,12 +4078,18 @@ mov_big.gif;
 move_up.gif;
 move_down.gif;
 navmap.correct.gif;
+navmap.ellipsis.gif;
 navmap.open.gif;
+navmap.page.open.gif;
+navmap.page.closed.gif;
+navmap.page.open.nomanip.gif;
+navmap.page.closed.nomanip.gif;
 navmap.wrong.gif;
 navmap.folder.open.gif;
 navmap.folder.closed.gif;
 navmap.folder.open.nomanip.gif;
 navmap.folder.closed.nomanip.gif;
+neutral.gif;
 page.gif;
 page_big.gif;
 pdf.gif;
@@ -3758,6 +4130,8 @@ upperright.gif;
 user.gif;
 user_big.gif;
 userauthentication.gif;
+userauthentication_pt.gif;
+userauthentication_de.gif;
 wav.gif;
 wav_big.gif;
 white_space_20_22.gif;
@@ -3799,9 +4173,9 @@ subm_button.gif
 </filenames>
 </fileglob>
 <file>
-<source>loncom/xml/tth.pm</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/tth.pm</target>
+<source>modules/TexConvert/tthperl/tth.pm</source>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/tth.pm</target>
+<target dist='default'>home/httpd/lib/perl/tth.pm</target>
 <categoryname>system file</categoryname>
 <description>
 perl module for invoking functions specific to TeX-to-HTML conversion
@@ -3825,6 +4199,62 @@ tested
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/LondConnection.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/LondConnection.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     Manages a connection between a lonc proxy daemon and the lond server
+     in the remote node.
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+  <source>loncom/LondTransaction.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/LondTransaction.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+	Handles a single lon-capa insternal transaction
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/HashIterator.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/HashIterator.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+      Provides support to iterate through opaque hashes hidden e.g. within 
+      object private data.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/Queue.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/Queue.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+     Provides a FIFO queue class.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/Stack.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/Stack.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+     Provides a LIFO stack class.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/loncnew</source>
+   <target dist='default'>home/httpd/perl/loncnew</target>
+   <categoryname>script</categoryname>
+   <description>
+	  Proxy server for remote loncapa requests.
+          Needs CPAN Event module.
+   </description>
+</file>
+<file>
 <source>loncom/configuration/Configuration.pm</source>
 <target dist='default'>home/httpd/lib/perl/LONCAPA/Configuration.pm</target>
 <categoryname>system file</categoryname>
@@ -3837,8 +4267,8 @@ entries.
 </file>
 <file>
 <source>modules/TexConvert/tthperl/tth.so</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/tth.so</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/tth.so</target>
+<target dist='default'>home/httpd/lib/perl/tth.so</target>
 <categoryname>system file</categoryname>
 <description>
 shared library file for dynamic loading and unloading
@@ -3853,15 +4283,15 @@ related to this file during the build pr
 modules/TexConvert/tthperl/commands
 </build>
 <status>works/unverified</status>
-<dependencies>
+<privatedependencies>
 ../tthdynamic/tthfunc.c;
 ../ttmdynamic/ttmfunc.c
-</dependencies>
+</privatedependencies>
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.pm</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.pm</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.pm</target>
+<target dist='default'>home/httpd/lib/perl/capa.pm</target>
 <categoryname>system file</categoryname>
 <description>
 perl module for invoking functions specific to CAPA
@@ -3875,8 +4305,8 @@ the build process however.
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.bs</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.bs</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.bs</target>
+<target dist='default'>home/httpd/lib/perl/capa.bs</target>
 <categoryname>system file</categoryname>
 <description>
 bootstrap file associated with dynamic loading of this module on multiple
@@ -3891,8 +4321,8 @@ the build process however.
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.so</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.so</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.so</target>
+<target dist='default'>home/httpd/lib/perl/capa.so</target>
 <categoryname>system file</categoryname>
 <description>
 shared library file for dynamic loading and unloading
@@ -4083,7 +4513,12 @@ sunysb.gif;
 udel.gif;
 uz.gif;
 fvl.gif;
+csm.gif;
+fit.gif;
+nau.gif;
+UNICAMP.gif;
 glps.gif;
+BCHS.gif;
 headersfu.gif;
 uwsp.gif
 </filenames>
@@ -4098,6 +4533,11 @@ uwsp.gif
 annarbor.tab;
 default.tab;
 msu.tab;
+csm.tab;
+fit.tab;
+nau.tab;
+UNICAMP.tab;
+fsu.tab;
 sfu.tab;
 worf.tab
 </filenames>
@@ -4145,6 +4585,12 @@ w.gif;
 x.gif;
 y.gif;
 z.gif;
+ö.gif;
+ä.gif;
+ü.gif;
+ä.gif;
+ö.gif;
+ü.gif;
 colon.gif;
 hyphen.gif;
 slash.gif;
@@ -4185,6 +4631,7 @@ grds.gif;
 group.gif;
 help.gif;
 info.gif;
+keys.gif;
 ledblink.gif;
 ledgreen.gif;
 ledoff.gif;
@@ -4391,6 +4838,22 @@ blank.html;
 closechildren.html
 </filenames>
 </fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/res/adm/pages/reactionresponse/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/reactionresponse/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Associated file for answering reactionresponse style questions
+</description>
+<filenames>
+reaction_editor.html;
+reaction_frame.html;
+reaction_help.html;
+reaction_viewer.html;
+reaction_window.html
+</filenames>
+</fileglob>
 <file>
 <source>loncom/html/res/adm/pages/bookmarkmenu/bookmarklib.js</source>
 <target dist='default'>