--- doc/loncapafiles/loncapafiles.lpml	2004/01/11 18:24:46	1.319
+++ doc/loncapafiles/loncapafiles.lpml	2004/07/02 22:39:37	1.371
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.319 2004/01/11 18:24:46 www Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.371 2004/07/02 22:39:37 albertel Exp $ -->
 
 <!--
 
@@ -461,6 +461,60 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Web directory for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/images</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Images for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/lang</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Language files for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Plugins for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>FullPage plugin for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage/img</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>FullPage plugin for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage/lang</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>FullPage plugin for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage/popups</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>FullPage plugin for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/popups</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Popup windows for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/rat</targetdir>
   <categoryname>server readonly</categoryname>
   <description>home of the rat</description>
@@ -570,6 +624,14 @@ roles.db) which specify the roles and pr
 LON-CAPA system.</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lonCerts</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>
+    Directory for Certificates for SSL and local auth modes
+  </description>
+</directory>
+<directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/MathML</targetdir>
   <categoryname>server readonly</categoryname>
@@ -833,7 +895,9 @@ Thesaurus database file to be built from
 loncom/thesaurus/build_thesaurus_wrapper.sh
 </build>
 <dependencies>
-rawkey.txt
+rawkey.txt;
+build_thesaurus_db.pl;
+build_thesaurus_wrapper.sh
 </dependencies>
 </file>
 <file>
@@ -1059,6 +1123,187 @@ Meta file for generic resource for score
 </description>
 </file>
 <fileglob>
+<glob>*.js</glob>
+<sourcedir>loncom/html/htmlarea/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+dialog.js;
+htmlarea.js;
+popupdiv.js;
+popupwin.js;
+license.txt
+</filenames>
+</fileglob>
+<file>
+<source>loncom/html/htmlarea/htmlarea.css</source>
+<target dist='default'>home/httpd/html/htmlarea/htmlarea.css</target>
+<categoryname>interface file</categoryname>
+<description>
+Stylesheet for HTMLArea
+</description>
+</file>
+<file>
+<source>loncom/html/htmlarea/plugins/FullPage/full-page.js</source>
+<target dist='default'>home/httpd/html/htmlarea/plugins/FullPage/full-page.js</target>
+<categoryname>interface file</categoryname>
+<description>
+FullPage plugin for HTMLArea
+</description>
+</file>
+<fileglob>
+<glob>*.js</glob>
+<sourcedir>loncom/html/htmlarea/plugins/FullPage/lang/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/plugins/FullPage/lang/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Language files belonging to FullPage plugin for HTMLArea.
+</description>
+<filenames>
+en.js;
+ro.js;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
+<sourcedir>loncom/html/htmlarea/plugins/FullPage/img/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/plugins/FullPage/img/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Image files belonging to FullPage plugin for HTMLArea.
+</description>
+<filenames>
+docprop.gif;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.html</glob>
+<sourcedir>loncom/html/htmlarea/plugins/FullPage/popups/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/plugins/FullPage/popups/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Popup files belonging to FullPage plugin for HTMLArea.
+</description>
+<filenames>
+docprop.html;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.js</glob>
+<sourcedir>loncom/html/htmlarea/lang/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/lang/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+b5.js;
+de.js;
+fi.js;
+it.js;
+nl.js;
+ro.js;
+vn.js;
+en.js;
+fr.js;
+ja-utf8.js;
+pl.js;
+ru.js;
+da.js;
+es.js;
+gb.js;
+nb.js;
+pt_br.js;
+se.js;
+he.js;
+hu.js;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/htmlarea/popups/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/popups/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+about.html;
+insert_image.html;
+old_insert_image.html;
+blank.html;
+editor_help.html;
+insert_table.html;
+custom2.html;
+fullscreen.html;
+old-fullscreen.html;
+select_color.html;
+popup.js;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
+<sourcedir>loncom/html/htmlarea/images/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/images/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+ed_left_to_right.gif;
+ed_right_to_left.gif;
+ed_save.gif;
+ed_delete.gif;
+ed_link.gif;
+ed_about.gif;
+ed_format_bold.gif;
+ed_list_bullet.gif;
+ed_align_center.gif;
+ed_format_italic.gif;
+ed_list_num.gif;
+ed_align_justify.gif;
+ed_format_strike.gif;
+ed_paste.gif;
+ed_align_left.gif;
+ed_format_sub.gif;
+ed_redo.gif;
+ed_align_right.gif;
+ed_format_sup.gif;
+ed_show_border.gif;
+ed_blank.gif;
+ed_format_underline.gif;
+ed_splitcel.gif;
+ed_charmap.gif;
+ed_help.gif;
+ed_undo.gif;
+ed_color_bg.gif;
+ed_hr.gif;
+fullscreen_maximize.gif;
+ed_color_fg.gif;
+ed_html.gif;
+fullscreen_minimize.gif;
+ed_copy.gif;
+ed_image.gif;
+insert_table.gif;
+ed_custom.gif;
+ed_indent_less.gif;
+ed_cut.gif;
+ed_indent_more.gif;
+ed_math.gif;
+ed_math_eqn.gif;
+</filenames>
+</fileglob>
+<fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/homework/templates/</sourcedir>
 <targetdir dist='default'>
@@ -1103,6 +1348,7 @@ SelectFromOptions-8ConceptGoups.problem;
 SelectFromOptions-8ConceptGoups.problem.meta;
 SelectFromOptions-Simple.problem;
 SelectFromOptions-Simple.problem.meta;
+SimpleStringResponse.problem.meta;
 script.library;
 script.library.meta;
 SimpleFormula.problem;
@@ -1182,6 +1428,14 @@ Descriptive list of abbreviations used i
 and privileges available in the network with function
 </description>
 </file>
+<file>
+<source>loncom/managers.tab</source>
+<target dist='default'>home/httpd/lonTabs/managers.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+List of machines allowed to pass along updates to hosts.tab and domain.tab
+</description>
+</file>
 <file type="private">
 <source>loncom/hosts.tab</source>
 <target dist='default'>home/httpd/lonTabs/hosts.tab</target>
@@ -1271,12 +1525,12 @@ Batch script for removing temporary tabl
 </description>
 </file>
 <file>
-<source>loncom/misc/cleanup_prtspool.pl</source>
-<target dist='default'>home/httpd/perl/cleanup_prtspool.pl</target>
+<source>loncom/misc/cleanup_file_caches.pl</source>
+<target dist='default'>home/httpd/perl/cleanup_file_caches.pl</target>
 <categoryname>script</categoryname>
 <description>
 Batch script for removing files not accessed within 24 hours from the 
-/home/httpd/prtspool directory.
+/home/httpd/prtspool and /home/httpd/html/userfiles/ directories.
 </description>
 </file>
 <file>
@@ -1437,6 +1691,33 @@ echo 'pod2html lonsql'
 </dependencies>
 </file>
 <file>
+  <source>loncom/CrGrant.pl</source>
+  <target dist='default'>home/httpd/perl/CrGrant.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Script used to verify and grant an SSL certificate to a Lon-CAPA host
+  </description>
+  <status>in progress</status>
+</file>
+<file>
+  <source>loncom/CrGenerate.pl</source>
+  <target dist='default'>home/httpd/perl/CrGenerate.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Script used to request an SSL certificate for a Lon-CAPA host.
+  </description>
+  <status>in progress</status>
+</file>
+<file>
+  <source>loncom/lonManage</source>
+  <target dist='default'>home/httpd/perl/lonManage</target>
+  <categoryname>script</categoryname>
+  <description>
+    Script to push changes to hosts.tab and domain.tab out to Lon-CAPA servers
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/lcpasswd</source>
 <target dist='default'>home/httpd/perl/lcpasswd</target>
 <categoryname>setuid script</categoryname>
@@ -1633,6 +1914,14 @@ Table which contains list of copyright p
 </description>
 </file>
 <file>
+<source>loncom/publisher/source_copyright.tab</source>
+<target dist='default'>home/httpd/html/res/adm/includes/source_copyright.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+Table which contains list of source copyright possibilities for educational resources.
+</description>
+</file>
+<file>
 <source>loncom/publisher/language.tab</source>
 <target dist='default'>home/httpd/lonTabs/language.tab</target>
 <categoryname>static conf</categoryname>
@@ -1723,6 +2012,15 @@ Handler to put up simple page
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/lonpickcode.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpickcode.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler to pick a CODE from the list of possible CODEs
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonpickstudent.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpickstudent.pm</target>
 <categoryname>handler</categoryname>
@@ -1769,6 +2067,48 @@ construction space menu.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/publisher/testbankimport.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/testbankimport.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility to convert plain text questions in a testbank file to LON-CAPA problems.
+Called by selecting testbank option when uploading file to construction space.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/imspackages/imsimport.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imsimport.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility to import courses from other CMSs packaged in IMS 1.1 content package
+format into LON-CAPA Construction space.
+Called by selecting IMS package option when uploading file to construction space.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/imspackages/imsimportdocs.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imsimportdocs.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility to import courses from other CMSs packaged in IMS 1.1 content package
+format into a LON-CAPA course via DOCS.
+Called using Import IMS package button displayed in Special documents column in DOCS display.  
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/imspackages/imsprocessor.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imsprocessor.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains routines used by imsimport handlers when importing contents of IMS 
+packages into construction space, or into a course directly via DOCS.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonhelp.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonhelp.pm</target>
 <categoryname>handler</categoryname>
@@ -1872,6 +2212,54 @@ The PDF Course Manual
 </description>
 <status>works/unverified</status>
 </file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.html</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.html</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT in HTML
+  </description>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.html.meta</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.html.meta</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT in HTML metadata
+  </description>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.library</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.library</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT library
+  </description>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.library.meta</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.library.meta</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT library metadata
+  </description>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.problem</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.problem</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT problem
+  </description>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.problem.meta</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.problem.meta</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT problem metadata
+  </description>
+</file>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/html/adm/help/gif/</sourcedir>
@@ -1882,6 +2270,19 @@ home/httpd/html/adm/help/gif/</targetdir
 Gif files for the help system
 </description>
 <filenames>
+Authoring_Dynamic_Plot_Axis_Labels.gif;
+Authoring_Dynamic_Plot_Axis_Tics_border.gif;
+Authoring_Dynamic_Plot_Axis_Tics_minor.gif;
+Authoring_Dynamic_Plot_Axis_Tics_nomirror.gif;
+Authoring_Dynamic_Plot_Axis_Tics_x_axis.gif;
+Authoring_Dynamic_Plot_Title_X_Y_Label.gif;
+Dynamic_Replication_Change.gif;
+Dynamic_Replication_Request.gif;
+Load_Balance_Example.gif;
+LONCAPA_Network_Diagram2.gif;
+LONCAPA_Network_Diagram.gif;
+Map_Example.gif;
+Resource_Assembly.gif;
 authorRemote.gif;
 constructionSpace.gif;
 constructionSpaceForPublishing.gif;
@@ -1934,6 +2335,19 @@ home/httpd/html/adm/help/eps/</targetdir
 EPS files for the help system
 </description>
 <filenames>
+Authoring_Dynamic_Plot_Axis_Labels.eps;
+Authoring_Dynamic_Plot_Axis_Tics_border.eps;
+Authoring_Dynamic_Plot_Axis_Tics_minor.eps;
+Authoring_Dynamic_Plot_Axis_Tics_nomirror.eps;
+Authoring_Dynamic_Plot_Axis_Tics_x_axis.eps;
+Authoring_Dynamic_Plot_Title_X_Y_Label.eps;
+Dynamic_Replication_Change.eps;
+Dynamic_Replication_Request.eps;
+Load_Balance_Example.eps;
+LONCAPA_Network_Diagram2.eps;
+LONCAPA_Network_Diagram.eps;
+Map_Example.eps;
+Resource_Assembly.eps;
 authorRemote.eps;
 constructionSpace.eps;
 constructionSpaceForPublishing.eps;
@@ -1987,27 +2401,37 @@ Tex files for the help system
 </description>
 <filenames>
 About_Authors_Manual.tex;
+About_Bombs.tex;
 About_Communication.tex;
 About_Developers_Manual.tex;
 About_Numerical_and_Formula_Response.tex;
+all_functions_table.tex;
+adaptive_hints.tex;
+Additional_Help.tex;
 Ambiguous_Reference.tex;
-Analyze_Problem.tex;
-Analysis_Analyze_Over.tex;
 Analysis_Analyze_as.tex;
+Analysis_Analyze_Over.tex;
 Analysis_num_plots.tex;
+Analyze_Problem.tex;
 Annotation.tex;
 Authentication.tex;
-Author_LON-CAPA_Introduction.tex;
-Author_Manual_Title_Page.tex;
-Author_Numerical_and_Formula.tex;
-Author_Remote_Control.tex;
 Authoring_Adding_Pictures.tex;
 Authoring_DataResponse.tex;
+Authoring_Dynamic_Plot_Axes.tex;
+Authoring_Dynamic_Plot_Curve_Data.tex;
+Authoring_Dynamic_Plot_Curve_Function.tex;
+Authoring_Dynamic_Plot_Curve.tex;
+Authoring_Dynamic_Plot_Gnuplot.tex;
+Authoring_Dynamic_Plot_Key.tex;
+Authoring_Dynamic_Plot_Label.tex;
+Authoring_Dynamic_Plot_Linestyle.tex;
 Authoring_Dynamic_Plot.tex;
+Authoring_Dynamic_Plot_Tics.tex;
+Authoring_Dynamic_Plot_Title_X_Y_Label.tex;
 Authoring_ExternalResponse.tex;
 Authoring_Foil_Structure_Tags.tex;
-Authoring_HTML_vs_Tex.tex;
 Authoring_Hint_Tags.tex;
+Authoring_HTML_vs_Tex.tex;
 Authoring_ImageResponse.tex;
 Authoring_Input_Tags.tex;
 Authoring_Internal_Tags.tex;
@@ -2019,18 +2443,22 @@ Authoring_Pictures_EPS.tex;
 Authoring_Piecewise_Plot.tex;
 Authoring_RadiobuttonResponse.tex;
 Authoring_Response_Attributes.tex;
-Authoring_Response_Tag_Intro.tex;
 Authoring_Responseparam_Parameter.tex;
+Authoring_Response_Tag_Intro.tex;
 Authoring_Scripting_Tags.tex;
 Authoring_Structure_Tags.tex;
 Authoring_XML_Intro.tex;
+Author_LON-CAPA_Introduction.tex;
+Author_Manual_Title_Page.tex;
+Author_Numerical_and_Formula.tex;
+Author_Remote_Control.tex;
 Bookmarks.tex;
 Bugzilla.tex;
-CAPA_LON-CAPA_function_diffs.tex;
 Caching.tex;
 Calendar_Add_Announcement.tex;
 Calendar_Remove_Announcement.tex;
 Calling_Functions.tex;
+CAPA_LON-CAPA_function_diffs.tex;
 Cascading_Parameters.tex;
 Change_Colors.tex;
 Change_Password.tex;
@@ -2059,8 +2487,8 @@ Course_Extending_Due_Dates.tex;
 Course_Face_To_Face_Records.tex;
 Course_Feedback_Addresses.tex;
 Course_Homework_Performance_Overview.tex;
-Course_Manual_Title_Page.tex;
 Course_Manually_Grade_Problem.tex;
+Course_Manual_Title_Page.tex;
 Course_Maximum_Collaborators.tex;
 Course_Message_Access.tex;
 Course_Modify_Student_Data.tex;
@@ -2090,16 +2518,28 @@ Docs_Adding_External_Resource.tex;
 Docs_Adding_Folders.tex;
 Docs_Adding_Syllabus.tex;
 Docs_Alternatives.tex;
+Docs_Check_Resource_Versions.tex;
 Docs_Creating_From_Template.tex;
+Docs_Dump_Course_Docs.tex;
 Docs_Editing_Templated_Pages.tex;
+Docs_Essay.tex;
 Docs_Importing_LON-CAPA_Resource.tex;
 Docs_Load_Map.tex;
 Docs_Main_Course_Documents.tex;
 Docs_Navigate_Content.tex;
+Docs_Option_Response.tex;
 Docs_Overview.tex;
+Docs_Radio.tex;
 Docs_Score_Upload_Form.tex;
+Docs_Search.tex;
+Docs_Simple_Problem.tex;
+Docs_String_Response.tex;
 Docs_Supplemental.tex;
 Docs_Uploading_From_Harddrive.tex;
+Docs_Verify_Content.tex;
+Edit_Syllabus.tex;
+exam_basics.tex
+Exploring_Your_Course.tex;
 Finding_Resources.tex;
 Foils.tex;
 Formula_Response_Adv_Intro.tex;
@@ -2109,26 +2549,31 @@ Formula_Response_Problems.tex;
 Formula_Response_Sampling.tex;
 Formula_Tolerance.tex;
 General_Intro.tex;
+Generation.tex;
+GradingOptions.tex;
 Greek_Symbols.tex;
-Guts_Apache.tex;
 Guts_Apache_Env.tex;
 Guts_Apache_Modules.tex;
+Guts_Apache.tex;
 Guts_Authentication.tex;
 Guts_Authoring.tex;
 Guts_Coding_Guidelines.tex;
 Guts_Course_Dir.tex;
 Guts_User_Dir.tex;
+Help.tex;
+Helper_Course_Initialization.tex;
 How_To_Edit_Existing_Content_Pages.tex;
 Latex_Footer.tex;
 Latex_Header.tex;
 Leaving_Feedback.tex;
 Login_To_LON-CAPA.tex;
 Metadata_Description.tex;
+Navigation_Screen.tex;
 Navmap_Host_Down.tex;
 Numerical_Response_Advanced_Example.tex;
 Numerical_Response_Format.tex;
-Numerical_Response_Intro.tex;
 Numerical_Response_Introduction.tex;
+Numerical_Response_Intro.tex;
 Numerical_Response_Parts_A.tex;
 Numerical_Response_Parts_B.tex;
 Numerical_Response_Problems.tex;
@@ -2136,6 +2581,7 @@ Numerical_Response_Randomization.tex;
 Numerical_Response_Simple_Example.tex;
 Numerical_Response_Tutorial_A.tex;
 Numerical_Response_Units.tex;
+numerical_wrong_answers.tex;
 Option_Response_Concept_Group_Example.tex;
 Option_Response_Matching_Example.tex;
 Option_Response_Problem_Creation.tex;
@@ -2147,7 +2593,9 @@ Other_Symbols.tex;
 Part_Tag_Edit_Help.tex;
 Personal_Info_Page.tex;
 Physical_Units.tex;
+Prefs_About_Me.tex;
 Prefs_Forwarding.tex;
+Prefs_Language.tex;
 Prefs_Screen_Name_Nickname.tex;
 Print_Resource.tex;
 Problem_Editor_Testing_Area.tex;
@@ -2164,13 +2612,18 @@ Radio_Response_Problems.tex;
 Radio_Response_Randomization.tex;
 Ranking_Problems.tex;
 Receipt.tex;
+Remote_Menu.tex;
 Resource_Discussion.tex;
 Resource_Types.tex;
 Roles_About.tex;
+Roles_Screen.tex;
 Script_Functions.tex;
+Scripting_Help.tex;
 Script_Tutorial_Intro.tex;
 Script_Variables.tex;
-Scripting_Help.tex;
+Search_Advanced.tex;
+Search_Basic.tex;
+Searching.tex;
 Sending_Email.tex;
 Sequence_Advanced_Editor_Creation.tex;
 Sequence_Definition.tex;
@@ -2203,6 +2656,8 @@ Spreadsheet_Student_Visible.tex;
 Spreadsheet_Template_Row.tex;
 Spreadsheet_Ternary_Operator.tex;
 Spreadsheet_Tries.tex;
+Statistics_Overall_Key.tex;
+Statistics_Cache.tex;
 String_Response_Problem_Creation.tex;
 String_Response_Problems.tex;
 Syllabus_ExtLink.tex;
@@ -2211,13 +2666,12 @@ Tolerance.tex;
 Uploaded_Templates_PublicView.tex;
 Uploaded_Templates_TextBoxes.tex;
 Variable_Naming_Conventions.tex;
-Variable_Tutorial_A.tex;
 Variables_in_Scripts.tex;
 Variables_in_the_Answer_Block.tex;
 Variables_in_the_Text_Block.tex;
+Variable_Tutorial_A.tex;
 What_Is_LON-CAPA.tex;
 Why_LON-CAPA.tex;
-all_functions_table.tex;
 </filenames>
 </fileglob>
 <fileglob>
@@ -2232,10 +2686,16 @@ Russian Tex files for the help system
 <filenames>
 About_Authors_Manual.tex;
 About_Communication.tex;
+About_Developers_Manual.tex;
 About_Numerical_and_Formula_Response.tex;
+CAPA_LON-CAPA_function_diffs.tex;
+Course_Maximum_Collaborators.tex;
+Course_Set_Start_End_Date.tex;
 Creating_A_Course_Intro.tex;
+Other_Symbols.tex;
 Physical_Units.tex;
 Print_Resource.tex;
+Authoring_Adding_Pictures.tex;
 </filenames>
 </fileglob>
 <file>
@@ -2257,6 +2717,15 @@ Handler to show statistics on solving LO
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/statistics/lonstathelpers.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstathelpers.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility module for statistics and data mining.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/statistics/lonproblemstatistics.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonproblemstatistics.pm
 </target>
@@ -2264,6 +2733,33 @@ Handler to show statistics on solving LO
 <description>
 The module that generate the html for the Problem Statistics web pages.
 </description>
+</file>
+<file>
+<source>loncom/interface/statistics/lonsurveyreports.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsurveyreports.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+Gives instructors access to compiled survey results.
+</description>
+</file>
+<file>
+<source>loncom/interface/statistics/lonstudentsubmissions.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstudentsubmissions.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+Generates excel file containing student submissions and correct answers.
+</description>
+</file>
+<file>
+<source>loncom/interface/statistics/loncorrectproblemplot.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncorrectproblemplot.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the correct problems plot web pages.
+</description>
 <status>works/unverified</status>
 </file>
 <file>
@@ -2605,6 +3101,7 @@ Translation files.
 <filenames>
 de.pm;
 pt.pm;
+fr.pm;
 ja.pm;
 tr.pm;
 ru.pm;
@@ -2894,6 +3391,14 @@ Handles the production of printable file
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/metadata_database/LONCAPA/lonmetadata.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonmetadata.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides a common interface to LON-CAPA metadata.
+  </description>
+</file>
+<file>
 <source>loncom/interface/lonsearchcat.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonsearchcat.pm</target>
 <categoryname>handler</categoryname>
@@ -3137,11 +3642,20 @@ Has routines which control the remote co
 <target dist='default'>home/httpd/lib/perl/Apache/lonremote.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Handler to lauch and collapse the remote control.
+Handler to launch and collapse the remote control.
 </description>
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/portfolio.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/portfolio.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to manage user portfolios
+</description>
+<status>unverified</status>
+</file>
+<file>
 <source>rat/lonpageflip.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpageflip.pm</target>
 <categoryname>handler</categoryname>
@@ -3374,6 +3888,14 @@ Handler for compositing images, and text
 </description>
 </file>
 <file>
+<source>loncom/homework/drawimage.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/drawimage.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for programtically defining an image
+</description>
+</file>
+<file>
 <source>loncom/homework/imagechoice.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/imagechoice.pm</target>
 <categoryname>handler</categoryname>
@@ -3563,6 +4085,15 @@ URI to filename translation
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/lonenc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonenc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Encryption and decryption of URIs
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/man/Apache__lonracc.3</source>
 <target dist='default'>usr/man/man3/Apache::lonracc.3</target>
 <categoryname>doc</categoryname>
@@ -3653,6 +4184,13 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/londatecheck.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/londatecheck.pm</target>
+<categoryname>handler</categoryname>
+<description>Checks contentopen/close settings disable subsequent PerlHandlers if not open</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/lonlogout.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonlogout.pm</target>
 <categoryname>handler</categoryname>
@@ -3666,6 +4204,12 @@ loncom/build/pod2html.sh ../auth/loncacc
 <description>replication</description>
 </file>
 <file>
+<source>loncom/lonnet/perl/lonuploadrep.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonuploadrep.pm</target>
+<categoryname>handler</categoryname>
+<description>copying of uploaded files</description>
+</file>
+<file>
 <source>loncom/auth/lonroles.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonroles.pm</target>
 <categoryname>handler</categoryname>
@@ -3709,6 +4253,15 @@ loncom/build/pod2html.sh ../auth/lonrole
 </dependencies>
 </file>
 <file>
+<source>loncom/interface/lonsource.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsource.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Problem source code viewer
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonindexer.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonindexer.pm</target>
 <categoryname>handler</categoryname>
@@ -4079,6 +4632,7 @@ accessbutton_pt.gif;
 accessbutton_de.gif;
 angry.gif;
 arrow_up.gif;
+baeh.gif;
 bigsmile.gif;
 branch.gif;
 cab.gif;
@@ -4090,6 +4644,8 @@ class_big.gif;
 coolindiff.gif;
 coolsmile.gif;
 cry.gif;
+doc.gif;
+doc_big.gif;
 dvi.gif;
 dvi_big.gif;
 eps.gif;
@@ -4135,6 +4691,8 @@ lonlogo.gif;
 lonlogos.gif;
 lowerleft.gif;
 lowerright.gif;
+mailbkgrd.gif;
+mailto.gif;
 minilogo.gif;
 meta.gif;
 meta_big.gif;
@@ -4161,6 +4719,8 @@ pdf.gif;
 pdf_big.gif;
 png.gif;
 png_big.gif;
+ppt.gif;
+ppt_big.gif;
 problem.gif;
 problem_big.gif;
 ps.gif;
@@ -4211,6 +4771,8 @@ whitespace7.gif;
 whitespace8.gif;
 whitespace9.gif;
 wink.gif;
+xls.gif;
+xls_big.gif;
 xml.gif;
 xml_big.gif;
 zip.gif;
@@ -4228,6 +4790,8 @@ Miscellaneous resources.
 <filenames>
 authorfeed.gif;
 bomb.gif;
+smallFAQ.gif;
+smallBug.gif;
 cat_button.gif;
 chat.gif;
 eval_button.gif;
@@ -4264,6 +4828,24 @@ tested
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/lonlocal.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonlocal.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     lonc/d handler for doing a local filesystem based init:
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+  <source>loncom/lonssl.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonssl.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     lonc/d handler for doing a remote SSL based init:
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
   <source>loncom/LondConnection.pm</source>
   <target dist='default'>home/httpd/lib/perl/LONCAPA/LondConnection.pm</target>
   <categoryname>system file</categoryname>
@@ -4588,16 +5170,25 @@ udel.gif;
 uz.gif;
 fvl.gif;
 csm.gif;
-fit.gif;
 nau.gif;
+nagoya.gif;
+acadiau.gif;
+psuerie.gif;
+redford.gif;
+huji.gif;
+ifusp.gif;
+ucsc.gif;
 waverly.gif;
 cmich.gif;
 UNICAMP.gif;
+lakefenton.gif;
+grandblanc.gif;
 glps.gif;
 BCHS.gif;
 headersfu.gif;
 uwsp.gif;
-bsu.gif
+bsu.gif;
+wmston.gif;
 </filenames>
 </fileglob>
 <fileglob>
@@ -4611,13 +5202,22 @@ annarbor.tab;
 default.tab;
 msu.tab;
 csm.tab;
-fit.tab;
+huji.tab;
 nau.tab;
+nagoya.tab;
+acadiau.tab;
+psuerie.tab;
+redford.tab;
 cmich.tab;
+ifusp.tab;
+ucsc.tab;
 UNICAMP.tab;
+lakefenton.tab;
+grandblanc.tab;
 fsu.tab;
 sfu.tab;
-worf.tab
+wmston.tab;
+worf.tab;
 </filenames>
 </fileglob>
 <fileglob>
@@ -4726,6 +5326,15 @@ anot.gif;
 back.gif;
 bchat.gif;
 bkm.gif;
+bl_step1.gif;
+bl_step2.gif;
+bl_step3.gif;
+bl_step4.gif;
+bl_step5.gif;
+bl_step6.gif;
+bl_step7.gif;
+bl_step8.gif;
+bl_step9.gif;
 brws.gif;
 catalog.gif;
 ccrs.gif;
@@ -4755,6 +5364,7 @@ ledoff.gif;
 ledon.gif;
 ledsend.gif;
 logout.gif;
+mcrs.gif;
 mrk.gif;
 nav.gif;
 next.gif;
@@ -5039,12 +5649,19 @@ schemes of settings-updating and file-ov
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/cron/loncapa</source>
-<target dist='default'>etc/cron.d/loncapa</target>
-<categoryname>static conf</categoryname>
-<description>
-file that specifies periodic processes to run for the LON-CAPA machine
-</description>
+  <source>loncom/cron/loncapa.built</source>
+  <target dist='default'>etc/cron.d/loncapa</target>
+  <categoryname>conf</categoryname>
+  <description>
+    file that specifies periodic processes to run for the LON-CAPA machine
+  </description>
+  <build trigger='always run'>
+loncom/cron/preserve_local_loncapa_cron
+  </build>
+  <dependencies>
+loncapa;
+preserve_local_loncapa_cron
+  </dependencies>
 </file>
 <file>
 <source>loncom/ntp/step-tickers</source>