--- doc/loncapafiles/loncapafiles.lpml	2005/03/03 08:19:38	1.404.2.2
+++ doc/loncapafiles/loncapafiles.lpml	2005/07/01 20:26:18	1.431
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.404.2.2 2005/03/03 08:19:38 albertel Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.431 2005/07/01 20:26:18 albertel Exp $ -->
 
 <!--
 
@@ -426,6 +426,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/cgi-bin/mimetexcache</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>location of cgi scripts</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html</targetdir>
   <categoryname>server standard</categoryname>
   <description>location of web-accessible file tree</description>
@@ -528,6 +534,18 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jmol</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Jmol files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jsMath support files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/helper</targetdir>
   <categoryname>server readonly</categoryname>
   <description>XML specifications for helpers</description>
@@ -1564,6 +1582,14 @@ Small fry httpd on port 8080
 </description>
 </file>
 <file>
+<source>loncom/lonmemcached</source>
+<target dist='default'>home/httpd/perl/lonmemcached</target>
+<categoryname>script</categoryname>
+<description>
+small script to handle the start up of the memcached daemon
+</description>
+</file>
+<file>
     <source>loncom/request_ssl_key.sh</source>
     <target dist='default'>home/httpd/lonCerts</target>
     <categoryname>script</categoryname>
@@ -2461,6 +2487,7 @@ Analysis_Analyze_Over.tex;
 Analyze_Problem.tex;
 Annotation.tex;
 Authentication.tex;
+Auth_Options.tex;
 Authoring_Adding_Pictures.tex;
 Authoring_DataResponse.tex;
 Authoring_Dynamic_Plot_Axes.tex;
@@ -2651,6 +2678,7 @@ Print_Resource.tex;
 Problem_Editor_Testing_Area.tex;
 Problem_Editor_XML_Index.tex;
 Problem_LON-CAPA_Functions.tex;
+Problem_LON-CAPA_Image_Options.tex;
 Problem_Types.tex;
 Publishing_A_Resource.tex;
 Publishing_Author_Tutorial_Segue.tex;
@@ -2889,6 +2917,16 @@ The module that generate the html for th
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonwhatsnew.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonwhatsnew.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to display items in course requiring action.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/londiff.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londiff.pm</target>
 <categoryname>handler</categoryname>
@@ -3029,6 +3067,15 @@ Handler to retrieve old versions from re
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/publisher/loncleanup.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncleanup.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to clean up HTML files.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/man/Apache__lonretrieve.3</source>
 <target dist='default'>usr/man/man3/Apache::lonretrieve.3</target>
 <categoryname>doc</categoryname>
@@ -3313,6 +3360,23 @@ smiles.gif
   </filenames>
 </fileglob>
 
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jmol/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jmol/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    Jmol files, for displaying structures
+  </description>
+  <filenames>
+COPYRIGHT.txt;
+JmolApplet.jar;
+Jmol.js;
+LICENSE.txt;
+README.txt
+  </filenames>
+</fileglob>
+
 <file>
   <source>loncom/homework/convertjme.pl</source>
   <target dist='default'>home/httpd/cgi-bin/convertjme.pl</target>
@@ -3322,6 +3386,29 @@ smiles.gif
   </description>
 </file>
 
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jsMath/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jsMath is a Javascript solution to converting TeX to something the browser can see
+  </description>
+  <filenames>
+black.gif;
+blank.gif;
+COPYING.txt;
+jsMath-fallback-mac.js;
+jsMath-fallback-mac-mozilla.js;
+jsMath-fallback-mac-msie.js;
+jsMath-fallback-pc.js;
+jsMath-fallback-unix.js;
+jsMath.js;
+jsMath-mozilla.js;
+jsMath-msie-mac.js;
+  </filenames>
+</fileglob>
+
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -3342,15 +3429,6 @@ Handles multiple-choice style responses.
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonassignments.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonassignments.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Handles processing of assignments.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/interface/loncommunicate.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncommunicate.pm</target>
 <categoryname>handler</categoryname>
@@ -3458,6 +3536,15 @@ Course initialization helper.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/html/adm/helper/resettimes.helper</source>
+<target dist='default'>home/httpd/html/adm/helper/resettimes.helper</target>
+<categoryname>handler</categoryname>
+<description>
+Helper to resetting a student's first access time.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonquickgrades.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonquickgrades.pm</target>
 <categoryname>handler</categoryname>
@@ -3648,7 +3735,16 @@ Defines the specifics of the assessment
 <target dist='default'>home/httpd/lib/perl/Apache/lonparmset.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Handler to resolve ambiguous file locations
+Handler for setting and modifying both course preferences and coure parameters
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/slotrequest.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/slotrequest.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for students to add access slots
 </description>
 <status>works/unverified</status>
 </file>
@@ -4070,6 +4166,15 @@ resources
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/bridgetask.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/bridgetask.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+implements the tags for supporting bridge tasks
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/homework/response.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/response.pm</target>
 <categoryname>handler</categoryname>
@@ -4488,12 +4593,12 @@ loncom/build/pod2html.sh ../lonnet/perl/
 <categoryname>interface file</categoryname>
 <description>Bookmark and tab icon</description>
 </file>
-<link>
-<linkto>etc/mime.types</linkto>
+<file>
+<source>loncom/mime.types</source>
 <target dist='default'>etc/httpd/conf/mime.types</target>
-<categoryname>symbolic link</categoryname>
-<description>symbolic link to /etc/mime.types</description>
-</link>
+<categoryname>www static conf</categoryname>
+<description>Expaned mime.types</description>
+</file>
 <link>
 <linkto>home/httpd/html/res</linkto>
 <target dist='default'>home/httpd/html/raw</target>
@@ -4859,6 +4964,8 @@ srvhalf.gif;
 srvnull.gif;
 survey.gif;
 survey_big.gif;
+task.gif;
+task_big.gif;
 tex.gif;
 tex_big.gif;
 tth.gif;
@@ -4919,6 +5026,15 @@ subm_button.gif
 </filenames>
 </fileglob>
 <file>
+<source>loncom/xml/algebra/AlgParser.pm</source>
+<target dist='default'>home/httpd/lib/perl/AlgParser.pm</target>
+<categoryname>system file</categoryname>
+<description>
+perl module for invoking functions specific to Algebra-to-TeX-to-HTML conversion
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>modules/TexConvert/tthperl/tth.pm</source>
 <target dist='default'>home/httpd/lib/perl/tth.pm</target>
 <categoryname>system file</categoryname>
@@ -5130,6 +5246,19 @@ commands;
 ../../../CAPA/pProj/lex_debug.h
 </dependencies>
 </file>
+<file>
+<source>loncom/cgi/mimeTeX/mimetex.cgi</source>
+<target dist='default'>home/httpd/cgi-bin/mimetex.cgi</target>
+<categoryname>script</categoryname>
+<description>
+cgi binary for doing TeX -> math translation
+</description>
+<build trigger='always run'>
+loncom/cgi/mimeTeX/commands
+</build>
+<dependencies>
+</dependencies>
+</file>
 <fileglob>
 <glob>*.ent</glob>
 <sourcedir>loncom/MathML/</sourcedir>
@@ -5241,6 +5370,7 @@ student.jpg;
 <description>Logos of LON-CAPA domains (jpg)</description>
 <filenames>
 headermsu.jpg;
+headertccfl.jpg;
 </filenames>
 </fileglob>
 <fileglob>
@@ -5303,8 +5433,13 @@ glps.gif;
 BCHS.gif;
 headersfu.gif;
 uwsp.gif;
+tccfl.gif;
 bsu.gif;
 wmston.gif;
+headerharvard.gif;
+harvard.gif;
+uga.gif;
+headeruga.gif;
 </filenames>
 </fileglob>
 <fileglob>
@@ -5338,6 +5473,9 @@ vcu.tab;
 sfu.tab;
 wmston.tab;
 worf.tab;
+tccfl.tab;
+harvard.tab;
+uga.tab;
 </filenames>
 </fileglob>
 <fileglob>
@@ -5427,6 +5565,7 @@ prt_pt.gif;
 res_pt.gif;
 roles_pt.gif;
 sbkm_pt.gif;
+sctr.gif;
 spacer_pt.gif;
 sprs_pt.gif;
 src_pt.gif;
@@ -5490,6 +5629,7 @@ logout.gif;
 mcrs.gif;
 mrk.gif;
 nav.gif;
+new.gif;
 next.gif;
 nothumb.gif;
 parm.gif;
@@ -5943,6 +6083,7 @@ Appleshares access (Macintosh)
     </description>
 <filenames>
 activity_to_accesscount.pl;
+clean_db.pl;
 dump_db.pl;
 escape.pl;
 excise_from_db.pl;
@@ -5956,5 +6097,15 @@ unescape.pl;
 user_login_count.pl;
 </filenames>
 </fileglob>
+<file>
+<source>loncom/build/distprobe</source>
+<target dist='default'>home/httpd/perl/distprobe</target>
+<categoryname>script</categoryname>
+<description>
+for probing operating system flavor and version
+</description>
+<note>
+</note>
+</file>
 </files>
 </lpml>