--- doc/loncapafiles/loncapafiles.lpml	2005/05/28 01:32:31	1.421
+++ doc/loncapafiles/loncapafiles.lpml	2006/09/13 18:56:56	1.505
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.421 2005/05/28 01:32:31 www Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.505 2006/09/13 18:56:56 raeburn Exp $ -->
 
 <!--
 
@@ -534,12 +534,36 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jmol</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Jmol files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/jsMath</targetdir>
   <categoryname>server readonly</categoryname>
   <description>jsMath support files</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/extensions</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jsMath extension files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/uncompressed</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jsMath files (uncompressed)</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/plugins</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jsMath plugin files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/helper</targetdir>
   <categoryname>server readonly</categoryname>
   <description>XML specifications for helpers</description>
@@ -570,6 +594,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/tex/de</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>German online help documentation tex files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/png</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation png files</description>
@@ -1048,6 +1078,12 @@ cgi-script to ping other server
 Dynamically outputs X-Y plots with point, line, etc functions.
 </description>
 </file>
+<link>
+  <linkto>home/httpd/cgi-bin/plot.gif</linkto>
+  <target dist='default'>home/httpd/cgi-bin/plot.png</target>
+  <categoryname>symbolic link</categoryname>
+  <description>symbolic link for plot.png to point at plot.gif</description>
+</link>
 <file>
 <source>loncom/cgi/imagechoice.pl</source>
 <target dist='default'>home/httpd/cgi-bin/imagechoice.pl</target>
@@ -1114,6 +1150,23 @@ Meta file for generic resource for DOCS
 </description>
 </file>
 <file>
+<source>loncom/homework/templates/DropBox.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/DropBox.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for DOCS "Drop Box"
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/DropBox.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/DropBox.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for DOCS "Drop Box"
+</description>
+</file>
+
+<file>
 <source>loncom/homework/templates/examupload.problem</source>
 <target dist='default'>home/httpd/html/res/lib/templates/examupload.problem</target>
 <categoryname>interface file</categoryname>
@@ -1327,6 +1380,8 @@ blank.problem;
 blank.problem.meta;
 ClickImageExample.problem;
 ClickImageExample.problem.meta;
+CustomResponse.problem;
+CustomResponse.problem.meta;
 Essay.problem;
 Essay.problem.meta;
 examupload.problem;
@@ -1368,7 +1423,11 @@ SimpleMatching.problem.meta;
 SimpleRank.problem;
 SimpleRank.problem.meta;
 SimpleTrueFalse.problem;
-SimpleTrueFalse.problem.meta
+SimpleTrueFalse.problem.meta;
+organic.problem;
+organic.problem.meta;
+reaction.problem;
+reaction.problem.meta
 </filenames>
 </fileglob>
 <file>
@@ -1517,6 +1576,14 @@ Example:<br /><nobr /><tt>server ntp.msu
 </note>
 </file>
 <file>
+  <source>loncom/misc/archive_old_files.pl</source>
+  <target dist='default'>home/httpd/perl/archive_old_files.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+Batch script for compressing older .db files
+  </description>
+</file>
+<file>
 <source>loncom/metadata_database/searchcat.pl</source>
 <target dist='default'>home/httpd/perl/searchcat.pl</target>
 <categoryname>script</categoryname>
@@ -1568,6 +1635,14 @@ MySQL are included in their configuratio
 </description>
 </file>
 <file>
+  <source>loncom/debugging_tools/updateclasslist.pl</source>
+  <target dist='default'>home/httpd/perl/debug/updateclasslist.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+propagate the ids in ids.db to all course classlists
+  </description>
+</file>
+<file>
 <source>loncom/lonhttpd</source>
 <target dist='default'>home/httpd/perl/lonhttpd</target>
 <categoryname>script</categoryname>
@@ -1584,8 +1659,16 @@ small script to handle the start up of t
 </description>
 </file>
 <file>
+  <source>loncom/lonmaxima</source>
+  <target dist='default'>home/httpd/perl/lonmaxima</target>
+  <categoryname>script</categoryname>
+  <description>
+    manages the existance and talking to the maxima processes
+  </description>
+</file>
+<file>
     <source>loncom/request_ssl_key.sh</source>
-    <target dist='default'>home/httpd/lonCerts</target>
+    <target dist='default'>home/httpd/lonCerts/request_ssl_key.sh</target>
     <categoryname>script</categoryname>
     <description>
         Script that requests a Lon-CAPA ssl key.
@@ -1675,10 +1758,18 @@ echo 'pod2html lond'
 </file>
 <file>
 <source dist='default'>loncom/build/CHECKRPMS.default</source>
-<source dist='fedora1 fedora2 fedora3'>loncom/build/CHECKRPMS.fedora</source>
+<source dist='fedora1 fedora2 fedora3 fedora4 fedora5'>loncom/build/CHECKRPMS.fedora</source>
+<source dist='rhes4'>loncom/build/CHECKRPMS.rhel</source>
+<source dist='suse9.2 suse9.3 sles9'>loncom/build/CHECKRPMS.suse</source>
 <target dist='default'>home/httpd/cgi-bin/CHECKRPMS</target>
 <categoryname>script</categoryname>
 <description>CGI script that checks status of RPMs</description>
+<dependencies>
+loncom/build/CHECKRPMS.default;
+loncom/build/CHECKRPMS.fedora;
+loncom/build/CHECKRPMS.rhel;
+loncom/build/CHECKRPMS.suse;
+</dependencies>
 </file>
 <file>
 <source>loncom/cgi/loncron.pl</source>
@@ -2027,6 +2118,15 @@ Handler for periodically fetch new lines
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/longroupchat.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/longroupchat.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for generation of frameset for display of group chat
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonannounce.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonannounce.pm</target>
 <categoryname>handler</categoryname>
@@ -2045,6 +2145,15 @@ Handler to put up syllabus
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonrss.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrss.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for adding to and displaying RSS
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/homework/lonsimpleproblemedit.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonsimpleproblemedit.pm</target>
 <categoryname>handler</categoryname>
@@ -2479,11 +2588,14 @@ Additional_Help.tex;
 Ambiguous_Reference.tex;
 Analysis_Analyze_Over.tex;
 Analyze_Problem.tex;
+Answer_Date.tex;
 Annotation.tex;
 Authentication.tex;
+Auth_Options.tex;
 Authoring_Adding_Pictures.tex;
 Authoring_DataResponse.tex;
 Authoring_Dynamic_Plot_Axes.tex;
+Authoring_Dynamic_Plot_Color_Selection.tex;
 Authoring_Dynamic_Plot_Curve_Data.tex;
 Authoring_Dynamic_Plot_Curve_Function.tex;
 Authoring_Dynamic_Plot_Curve.tex;
@@ -2501,6 +2613,7 @@ Authoring_HTML_vs_Tex.tex;
 Authoring_ImageResponse.tex;
 Authoring_Input_Tags.tex;
 Authoring_Internal_Tags.tex;
+Authoring_Intro.tex;
 Authoring_M_Tag.tex;
 Authoring_NumericalResponse.tex;
 Authoring_OptionResponse.tex;
@@ -2512,13 +2625,16 @@ Authoring_Response_Attributes.tex;
 Authoring_Responseparam_Parameter.tex;
 Authoring_Response_Tag_Intro.tex;
 Authoring_Scripting_Tags.tex;
+Authoring_Spreadsheet.tex;
 Authoring_Structure_Tags.tex;
 Authoring_XML_Intro.tex;
 Author_LON-CAPA_Introduction.tex;
 Author_Manual_Title_Page.tex;
 Author_Numerical_and_Formula.tex;
 Author_Remote_Control.tex;
+Batch_Creation.tex;
 Bookmarks.tex;
+Browsing_Resources.tex;
 Bugzilla.tex;
 Caching.tex;
 Calendar_Add_Announcement.tex;
@@ -2526,22 +2642,30 @@ Calendar_Remove_Announcement.tex;
 Calling_Functions.tex;
 CAPA_LON-CAPA_function_diffs.tex;
 Cascading_Parameters.tex;
+Catalog_Info.tex;
 Change_Colors.tex;
 Change_Password.tex;
 Chart_Description.tex;
 Change_Discussion_Display.tex;
+Chart_Enrollment_Status.tex;
 Chart_Output_Data.tex;
 Chart_Output_Formats.tex;
+Chart_Sections.tex;
+Chart_Sequences.tex;
+Chart_Student_Data.tex;
 Chatting.tex;
 Coauthor.tex;
 Construction_Space_Overview.tex;
+Contextual_Help.tex;
 Course_Add_Other.tex;
 Course_Add_Student.tex;
+Course_Automated_Enrollment.tex;
 Course_Broadcast_Message.tex;
 Course_Change_Privileges.tex;
 Course_Chart_To_Excel.tex;
 Course_Chat.tex;
 Course_Convert_To_CSV.tex;
+Course_Coordination_Intro.tex;
 Course_Create_Class_List.tex;
 Course_Critical_Message.tex;
 Course_Deleting.tex;
@@ -2550,6 +2674,7 @@ Course_Discussion_Board.tex;
 Course_Drop_Student.tex;
 Course_Edit_Content.tex;
 Course_Editing_Custom_Roles.tex;
+Course_Environment.tex;
 Course_Extending_Due_Dates.tex;
 Course_Face_To_Face_Records.tex;
 Course_Feedback_Addresses.tex;
@@ -2560,6 +2685,7 @@ Course_Maximum_Collaborators.tex;
 Course_Message_Access.tex;
 Course_Modify_Student_Data.tex;
 Course_Parameter_Levels.tex;
+Course_Parameter_Table_Mode.tex;
 Course_Problem_Weight.tex;
 Course_Set_Start_End_Date.tex;
 Course_Setting_Parameters.tex;
@@ -2571,11 +2697,14 @@ Course_User_Parameter.tex;
 Course_View_Class_List.tex;
 Create_Course.tex;
 Creating_A_Course_Intro.tex;
+Creating_Groups.tex;
 Creating_New_Content_Pages.tex;
 Creating_Online_Problems.tex;
 Creating_Radio_Response_Problems.tex;
+Custom_Response_Problems.tex;
 Developer_Manual_Title_Page.tex;
 Developer_Tutorial.tex;
+Distribute_Messages.tex;
 Docs_About_Bulletin_Board.tex;
 Docs_About_My_Personal_Info.tex;
 Docs_About_Simple_Page.tex;
@@ -2589,6 +2718,7 @@ Docs_Alternatives.tex;
 Docs_Check_Resource_Versions.tex;
 Docs_Creating_From_Template.tex;
 Docs_Dump_Course_Docs.tex;
+Docs_Export_Course_Docs.tex;
 Docs_Editing_Templated_Pages.tex;
 Docs_Essay.tex;
 Docs_Importing_LON-CAPA_Resource.tex;
@@ -2605,9 +2735,16 @@ Docs_String_Response.tex;
 Docs_Supplemental.tex;
 Docs_Uploading_From_Harddrive.tex;
 Docs_Verify_Content.tex;
+Due_Date.tex;
 Edit_Syllabus.tex;
+Error.tex;
 exam_basics.tex;
 Exploring_Your_Course.tex;
+Feedback_Author.tex;
+Feedback_Content.tex;
+Feedback_Discuss_Anon.tex;
+Feedback_Discussion.tex;
+Feedback_Policy.tex;
 Finding_Resources.tex;
 Foils.tex;
 Formula_Response_Adv_Intro.tex;
@@ -2618,6 +2755,13 @@ Formula_Response_Sampling.tex;
 Formula_Tolerance.tex;
 General_Intro.tex;
 Generation.tex;
+Grade_All.tex;
+Grade_Intro.tex;
+Grade_One.tex;
+Grade_Scantron.tex;
+Grade_Sequence.tex;
+Grade_Upload.tex;
+Grade_Verify.tex;
 GradingOptions.tex;
 Greek_Symbols.tex;
 Guts_Apache_Env.tex;
@@ -2651,6 +2795,7 @@ Numerical_Response_Simple_Example.tex;
 Numerical_Response_Tutorial_A.tex;
 Numerical_Response_Units.tex;
 numerical_wrong_answers.tex;
+Open_Date.tex;
 Option_Response_Concept_Group_Example.tex;
 Option_Response_Matching_Example.tex;
 Option_Response_Problem_Creation.tex;
@@ -2659,6 +2804,9 @@ Option_Response_Problem_Parts.tex;
 Option_Response_Problems.tex;
 Option_Response_Simple.tex;
 Other_Symbols.tex;
+Parameter_Helper.tex;
+Parameter_Manager.tex;
+Parameter_Overview.tex;
 Part_Tag_Edit_Help.tex;
 Personal_Info_Page.tex;
 Physical_Units.tex;
@@ -2666,18 +2814,22 @@ Prefs_About_Me.tex;
 Prefs_Forwarding.tex;
 Prefs_Language.tex;
 Prefs_Screen_Name_Nickname.tex;
+Print_Library.tex;
 Print_Options.tex;
 Print_Resource.tex;
+Print_Tricks.tex;
 Problem_Editor_Testing_Area.tex;
 Problem_Editor_XML_Index.tex;
 Problem_LON-CAPA_Functions.tex;
 Problem_LON-CAPA_Image_Options.tex;
+Problem_Parameters.tex;
 Problem_Types.tex;
 Publishing_A_Resource.tex;
 Publishing_Author_Tutorial_Segue.tex;
 Publishing_Copyright.tex;
 Publishing_Intro.tex;
 Publishing_Keywords.tex;
+Quick_Grades_Description.tex;
 Quick_Grades_Possibly_Correct.tex;
 Radio_Response_Problems.tex;
 Radio_Response_Randomization.tex;
@@ -2732,8 +2884,12 @@ Statistics_Sequence.tex;
 Statistics_Cache.tex;
 String_Response_Problem_Creation.tex;
 String_Response_Problems.tex;
+Student_Intro.tex;
+Submission_Time_Analysis.tex;
 Syllabus_ExtLink.tex;
 Syllabus_URLs.tex;
+Table_Mode.tex;
+Testbank_Formatting.tex;
 TEXDropEmptyColumns_attribute.tex;
 TEXitemgroupwidth_attribute.tex;
 TEXitemgroup_attribute.tex;
@@ -2741,20 +2897,38 @@ TEXlayout_attribute.tex;
 TEXsize_attribute.tex;
 TEXtype_attribute.tex;
 TEXwidth_attribute.tex;
+Tries.tex;
 Tolerance.tex;
 Uploaded_Templates_PublicView.tex;
 Uploaded_Templates_TextBoxes.tex;
+Uploading_File_Options.tex;
 Variable_Naming_Conventions.tex;
 Variables_in_Scripts.tex;
 Variables_in_the_Answer_Block.tex;
 Variables_in_the_Text_Block.tex;
 Variable_Tutorial_A.tex;
+View_All_Messages.tex;
+View_Critical_Messages.tex;
+View_recent_activity.tex;
 What_Is_LON-CAPA.tex;
 Why_LON-CAPA.tex;
 </filenames>
 </fileglob>
 <fileglob>
 <glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/tex/de/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/tex/de/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+German Tex files for the help system
+</description>
+<filenames>
+Tries.tex;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
 <sourcedir>loncom/html/adm/help/tex/ru/</sourcedir>
 <targetdir dist='default'>
 home/httpd/html/adm/help/tex/ru/</targetdir>
@@ -2785,6 +2959,12 @@ Authoring_Adding_Pictures.tex;
 A gdbm file containing a label->tex file hash.
 </description>
 <status>works/unverified</status>
+<build trigger='always run'>
+loncom/build/rebuild_label_hash.sh
+</build>
+<dependencies>
+rebuild_label_hash.sh
+</dependencies>
 </file>
 <fileglob>
   <glob>*</glob>
@@ -2890,6 +3070,15 @@ This module provides detailed analysis a
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/statistics/longradinganalysis.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/longradinganalysis.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    This module provides detailed analysis and raw data for submissions of various problem types.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/statistics/lonsubmissiontimeanalysis.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonsubmissiontimeanalysis.pm
 </target>
@@ -2910,6 +3099,16 @@ The module that generate the html for th
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonwhatsnew.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonwhatsnew.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to display items in course requiring action.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/londiff.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londiff.pm</target>
 <categoryname>handler</categoryname>
@@ -2995,6 +3194,15 @@ tag handlers needed by externalresponse.
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/gradesubmission.pl</source>
+  <target dist='default'>home/httpd/cgi-bin/gradesubmission.pl</target>
+  <categoryname>handler</categoryname>
+  <description>
+Example script for use with external response.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/lonpubdir.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpubdir.pm</target>
 <categoryname>handler</categoryname>
@@ -3172,6 +3380,15 @@ coordinators.
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/lonclonecourse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonclonecourse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Internal routines for creating a clone of an existing course.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/loncreateuser.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncreateuser.pm</target>
 <categoryname>handler</categoryname>
@@ -3206,6 +3423,14 @@ Contains the &mt access function to Loca
 </description>
 </file>
 <file>
+  <source>loncom/localize/lonlocalize.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonlocalize.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+handler for &mt()ing static files
+  </description>
+</file>
+<file>
 <source>loncom/localize/localize.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/localize.pm</target>
 <categoryname>handler</categoryname>
@@ -3343,6 +3568,23 @@ smiles.gif
   </filenames>
 </fileglob>
 
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jmol/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jmol/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    Jmol files, for displaying structures
+  </description>
+  <filenames>
+COPYRIGHT.txt;
+JmolApplet.jar;
+Jmol.js;
+LICENSE.txt;
+README.txt
+  </filenames>
+</fileglob>
+
 <file>
   <source>loncom/homework/convertjme.pl</source>
   <target dist='default'>home/httpd/cgi-bin/convertjme.pl</target>
@@ -3364,14 +3606,104 @@ jsMath is a Javascript solution to conve
 black.gif;
 blank.gif;
 COPYING.txt;
+jsMath-BaKoMa-fonts.js;
+jsMath-autoload.html;
+jsMath-controls.html;
 jsMath-fallback-mac.js;
 jsMath-fallback-mac-mozilla.js;
 jsMath-fallback-mac-msie.js;
 jsMath-fallback-pc.js;
+jsMath-fallback-symbols.js;
 jsMath-fallback-unix.js;
+jsMath-global-controls.html;
+jsMath-global.html;
 jsMath.js;
+jsMath-loader.html;
+jsMath-loader-omniweb4.js;
 jsMath-mozilla.js;
 jsMath-msie-mac.js;
+jsMath-old-browsers.js;
+  </filenames>
+</fileglob>
+
+<file>
+  <source>loncom/html/adm/jsMath/jsMath-fonts-1.3.zip</source>
+  <target dist='default'>home/httpd/html/adm/jsMath/fonts/</target>
+  <categoryname>script</categoryname>
+  <description>
+    Dynamically converts JME strings into either a png or ps file.
+  </description>
+  <installscript>
+commands /home/httpd/html/adm/jsMath
+  </installscript>
+  <dependencies>
+loncom/html/adm/jsMath/commands;
+loncom/html/adm/jsMath/jsMath-fonts-1.3.zip;
+  </dependencies>
+</file>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jsMath/extensions/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/extensions/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Additional jsMath functionality that can be used when needed.
+  </description>
+  <filenames>
+AMSsymbols.js;
+HTML.js;
+bbox.js;
+font.js;
+boldsymbol.js;
+double-click.js;
+fbox.js;
+leaders.js;
+mathchoice.js;
+mimeTeX.js;
+moreArrows.js;
+newcommand.js;
+underset-overset.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jsMath/plugins/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/plugins/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jsMath is a Javascript solution to converting TeX to something the browser can see
+  </description>
+  <filenames>
+autoload.js;
+CHMmode.js;
+global.js;
+mimeTeX.js;
+noCache.js;
+noGlobal.js;
+noImageFonts.js;
+spriteImageFonts.js;
+tex2math.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jsMath/uncompressed/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/uncompressed/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+the jsMath source files not compressed for increasing download speed (not used by lon-capa directly)
+  </description>
+  <filenames>
+def.js;
+font.js;
+jsMath-fallback-mac.js;
+jsMath-fallback-pc.js;
+jsMath-fallback-symbols.js;
+jsMath-fallback-unix.js;
+jsMath.js;
   </filenames>
 </fileglob>
 
@@ -3475,6 +3807,15 @@ echo 'pod2html lonnavmaps.pm'
 </dependencies>
 </file>
 <file>
+<source>loncom/interface/lonselstudent.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonselstudent.pm</target>
+<categoryname>standard</categoryname>
+<description>
+re-usable student selection subs.
+</description>
+<status>testing/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonhelper.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonhelper.pm</target>
 <categoryname>handler</categoryname>
@@ -3511,6 +3852,15 @@ Helper to resetting a student's first ac
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/html/adm/helper/newslot.helper</source>
+  <target dist='default'>home/httpd/html/adm/helper/newslot.helper</target>
+  <categoryname>handler</categoryname>
+  <description>
+Slot creation and editing helper.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonquickgrades.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonquickgrades.pm</target>
 <categoryname>handler</categoryname>
@@ -3625,6 +3975,43 @@ Allows users (including students) to vie
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/loncoursegroups.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncoursegroups.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows course coordinators to create groups, modify existing groups (including    
+adding, expiring or deleting group members, or modifying group member privileges.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/longroup.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/longroup.pm</target>
+<categoryname>handler</categoryname>
+<description>
+General routines used to gather information about courses in a group, and their settings, and also to perform auto-group adds/drops when a user's role assignment changes.    
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/groupboards.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/groupboards.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Displays bulletin boards in a group and provides a mechanism for users with board creation privileges in a group to create new bulletin boards.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/grouproster.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/grouproster.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Display group membership information. Type of information available depends on group privileges of the user.  
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonmsg.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonmsg.pm</target>
 <categoryname>handler</categoryname>
@@ -3634,12 +4021,20 @@ author_res_msg - send message to resourc
 user_crit_msg - send a critical message to a user. A critical message
 will require acknowledgment by the recipient and the sender will be notified.
 user_crit_received - routine to trigger acknowledgment.
-statuschange - change the status of a message (read, replied, forwarded, etc).
-The handler also displays messages, has routines to reply, etc.
 </description>
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/lonmsgdisplay.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmsgdisplay.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+statuschange - change the status of a message (read, replied, forwarded, etc).
+The handler displays messages, has routines to reply, etc.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/homework/hint.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/hint.pm</target>
 <categoryname>handler</categoryname>
@@ -3701,7 +4096,16 @@ Defines the specifics of the assessment
 <target dist='default'>home/httpd/lib/perl/Apache/lonparmset.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Handler to resolve ambiguous file locations
+Handler for setting and modifying both course preferences and coure parameters
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/slotrequest.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/slotrequest.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for students to add access slots
 </description>
 <status>works/unverified</status>
 </file>
@@ -3795,6 +4199,15 @@ Has routines which control the remote co
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/lonmainmenu.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmainmenu.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Displays the Main menu
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonremote.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonremote.pm</target>
 <categoryname>handler</categoryname>
@@ -3829,6 +4242,15 @@ Builds up frame set and loads in the rig
 <status>works/unverified</status>
 </file>
 <file>
+  <source>rat/map.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/map.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Functions for manipulating the contents of maps
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>rat/lonratmenu.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonratmenu.pm</target>
 <categoryname>handler</categoryname>
@@ -4151,6 +4573,15 @@ handles request to the CAPA homework pro
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/lonmaxima.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmaxima.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    routines to simplify talking to the maxima client
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/Safe.pm</source>
 <target dist='default'>home/httpd/lib/perl/Safe.pm</target>
 <categoryname>handler</categoryname>
@@ -4269,6 +4700,15 @@ Encryption and decryption of URIs
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/lonencurl.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonencurl.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler that takes care of decrypting request URL's
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/man/Apache__lonracc.3</source>
 <target dist='default'>usr/man/man3/Apache::lonracc.3</target>
 <categoryname>doc</categoryname>
@@ -4359,6 +4799,13 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/restrictedaccess.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/restrictedaccess.pm</target>
+<categoryname>handler</categoryname>
+<description>Passphrase entry form and verification for access to passphrase-protected portfolio files</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/londatecheck.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londatecheck.pm</target>
 <categoryname>handler</categoryname>
@@ -4366,6 +4813,13 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/auth/publiccheck.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/publiccheck.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Checks if resource is public and allows unauthenticated access if it is.</description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/lonlogout.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonlogout.pm</target>
 <categoryname>handler</categoryname>
@@ -4373,6 +4827,34 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/auth/migrateuser.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/migrateuser.pm</target>
+  <categoryname>handler</categoryname>
+  <description>auto logsin a remote user</description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/switchserver.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/switchserver.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Setups the transfer of a user between servers</description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/checkauthen.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/checkauthen.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Checks if a user's cookie exists and is valid</description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/simpleauthen.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/simpleauthen.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Always returns DENIED</description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/lonnet/perl/lonrep.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonrep.pm</target>
 <categoryname>handler</categoryname>
@@ -4786,7 +5268,8 @@ lonlogo_broken.gif;
 lonlogo_broken_tsp.gif;
 lonlogo_broken.eps;
 lonlogo_broken.jpg;
-lonlogo_broken.mov
+lonlogo_broken.mov;
+genericstudent_tn.gif
 </filenames>
 </fileglob>
 <fileglob>
@@ -4817,6 +5300,7 @@ check.gif;
 class.gif;
 class_big.gif;
 closepage.gif;
+clickhere.gif;
 coolindiff.gif;
 coolsmile.gif;
 cry.gif;
@@ -4842,6 +5326,7 @@ frowny.gif;
 gif.gif;
 gif_big.gif;
 header.gif;
+header.png;
 helpdesk.gif;
 helpgateway.gif;
 hrrm.gif;
@@ -4879,6 +5364,7 @@ mov_big.gif;
 move_up.gif;
 move_down.gif;
 navmap.correct.gif;
+navmap.partial.gif;
 navmap.ellipsis.gif;
 navmap.open.gif;
 navmap.page.open.gif;
@@ -4921,6 +5407,8 @@ srvhalf.gif;
 srvnull.gif;
 survey.gif;
 survey_big.gif;
+task.gif;
+task_big.gif;
 tex.gif;
 tex_big.gif;
 tth.gif;
@@ -5121,14 +5609,15 @@ CVS users.  (You can safely rely on the
 present on your system... don't worry about warnings
 related to this file during the build process.)
 </note>
-<build trigger='run if dependencies change'>
+<build trigger='always run'>
 modules/TexConvert/tthperl/commands
 </build>
 <status>works/unverified</status>
-<privatedependencies>
-../tthdynamic/tthfunc.c;
-../ttmdynamic/ttmfunc.c
-</privatedependencies>
+<dependencies>
+commands;
+compiles/tth.so.i386;
+compiles/tth.so.x86_64
+</dependencies>
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.pm</source>
@@ -5212,6 +5701,15 @@ cgi binary for doing TeX -> math transla
 loncom/cgi/mimeTeX/commands
 </build>
 <dependencies>
+commands;
+gfuntype.c;
+gifsave.c;
+mimetex.c;
+mimetex.h;
+mimetex.html;
+README;
+texfonts.h;
+LICENSE;
 </dependencies>
 </file>
 <fileglob>
@@ -5295,6 +5793,23 @@ Provides many functions for the &lt;scri
 Functions are documented in CVS:loncapa/doc/homework/homework5.html.
 </description>
 </file>
+
+<file>
+  <source>loncom/homework/task.css</source>
+  <target dist='default'>home/httpd/html/res/adm/includes/task.css</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Style definitions for task display
+  </description>
+</file>
+<file>
+  <source>loncom/homework/task_grading.js</source>
+  <target dist='default'>home/httpd/html/res/adm/includes/task_grading.js</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Javascript to make the grading screen of task easier to use
+  </description>
+</file>
 <file>
 <source>loncom/homework/capa.units</source>
 <target dist='default'>home/httpd/html/res/adm/includes/capa.units</target>
@@ -5325,6 +5840,11 @@ student.jpg;
 <description>Logos of LON-CAPA domains (jpg)</description>
 <filenames>
 headermsu.jpg;
+headertccfl.jpg;
+header_fsu.jpg;
+header_fsuK12.jpg;
+headerhope.jpg;
+jmsbanner.jpg;
 </filenames>
 </fileglob>
 <fileglob>
@@ -5357,9 +5877,12 @@ unihalle.gif;
 wscc.gif;
 cps.gif;
 fsu.gif;
+fsuK12.gif;
+hope.gif;
 vcu.gif;
 lsd.gif;
 msu.gif;
+jms.gif;
 nsdl.gif;
 pmm.gif;
 sunysb.gif;
@@ -5378,6 +5901,8 @@ huji.gif;
 ifusp.gif;
 ucsc.gif;
 uiuc.gif;
+uiucheader.gif;
+koinonia.gif;
 waverly.gif;
 cmich.gif;
 UNICAMP.gif;
@@ -5390,6 +5915,11 @@ uwsp.gif;
 tccfl.gif;
 bsu.gif;
 wmston.gif;
+headerharvard.gif;
+harvard.gif;
+uga.gif;
+headeruga.gif;
+covenantchristianhs.gif;
 </filenames>
 </fileglob>
 <fileglob>
@@ -5406,6 +5936,7 @@ csm.tab;
 huji.tab;
 nau.tab;
 nagoya.tab;
+koinonia.tab;
 kanazawa.tab;
 colorado.tab;
 acadiau.tab;
@@ -5413,17 +5944,23 @@ psuerie.tab;
 redford.tab;
 cmich.tab;
 ifusp.tab;
+jms.tab;
 ucsc.tab;
 uiuc.tab;
 UNICAMP.tab;
 lakefenton.tab;
 grandblanc.tab;
 fsu.tab;
+fsuK12.tab;
+hope.tab;
 vcu.tab;
 sfu.tab;
 wmston.tab;
 worf.tab;
 tccfl.tab;
+harvard.tab;
+uga.tab;
+tmcc.tab;
 </filenames>
 </fileglob>
 <fileglob>
@@ -5562,6 +6099,7 @@ fdbk.gif;
 feedback.gif;
 forw.gif;
 grds.gif;
+grps.gif;
 group.gif;
 help.gif;
 info.gif;
@@ -5573,9 +6111,11 @@ ledon.gif;
 ledsend.gif;
 list.gif;
 logout.gif;
+mail.gif;
 mcrs.gif;
 mrk.gif;
 nav.gif;
+new.gif;
 next.gif;
 nothumb.gif;
 parm.gif;
@@ -5593,6 +6133,7 @@ res.gif;
 roles.gif;
 rtrv.gif;
 sbkm.gif;
+sctr.gif;
 spacer.gif;
 sprs.gif;
 src.gif;
@@ -5603,6 +6144,14 @@ vbkm.gif;
 </filenames>
 </fileglob>
 <file>
+<source>loncom/html/res/adm/pages/math_example.tex</source>
+<target dist='default'>home/httpd/html/res/adm/pages/math_example.tex</target>
+<categoryname>interface file</categoryname>
+<description>
+ file with an example math equation in it.
+</description>
+</file>
+<file>
 <source>loncom/html/res/adm/pages/imgmaps.html</source>
 <target dist='default'>home/httpd/html/res/adm/pages/imgmaps.html</target>
 <categoryname>interface file</categoryname>
@@ -5804,7 +6353,9 @@ javascript for handling client-side inte
 </file>
 <file>
 <source dist='default'>loncom/build/CHECKRPMS.default</source>
-<source dist='fedora1 fedora2 fedora3'>loncom/build/CHECKRPMS.fedora</source>
+<source dist='fedora1 fedora2 fedora3 fedora4 fedora5'>loncom/build/CHECKRPMS.fedora</source>
+<source dist='rhes4'>loncom/build/CHECKRPMS.rhel</source>
+<source dist='suse9.2 suse9.3 sles9'>loncom/build/CHECKRPMS.suse</source>
 <target dist='default'>usr/local/loncapa/bin/CHECKRPMS</target>
 <categoryname>system script</categoryname>
 <description>
@@ -5909,6 +6460,7 @@ file that allows setuid password privile
 <file>
 <source>loncom/init.d/loncontrol</source>
 <target dist='default'>etc/rc.d/init.d/loncontrol</target>
+<target dist='suse9.2 suse9.3 sles9'>etc/init.d/loncontrol</target>
 <categoryname>root script</categoryname>
 <description>
 Controls the launching/halting of lonc, lond, and lonsql processes.
@@ -5939,6 +6491,31 @@ Appleshares access (Macintosh)
 </description>
 </file>
 <file>
+  <source>loncom/interface/loncss.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/loncss.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Generates standard LON-CAPA CSS
+  </description>
+</file>
+<file>
+  <source>loncom/LONCAPA.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Some basic Lon-CAPA functionality
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonnotify.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonnotify.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface for Domain Coordinators to (a) send broadcast e-mail to groups 
+of users, and (b) to display e-mail of this type sent in the past.
+  </description>
+</file>
+<file>
   <source>loncom/interface/lonhelpmenu.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonhelpmenu.pm</target>
   <categoryname>handler</categoryname>
@@ -5951,7 +6528,15 @@ Appleshares access (Macintosh)
   <target dist='default'>home/httpd/lib/perl/Apache/lonsupportreq.pm</target>
   <categoryname>handler</categoryname>
   <description>
-    Handler to make it easy for users to send a request to te helpdesk
+    Handler to make it easy for users to send a request to the helpdesk
+  </description>
+</file>
+<file>
+  <source>loncom/interface/coursecatalog.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/coursecatalog.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Display catalog of courses with institutional codes, filtered by domain-specific categories (e.g., year, semester, department etc.).
   </description>
 </file>
 <file>
@@ -5960,7 +6545,7 @@ Appleshares access (Macintosh)
   <categoryname>handler</categoryname>
   <description>
     Interface to modifying a course's internal ENV values for automated
-    enrollement
+    enrollment
   </description>
 </file>
 <file>
@@ -6019,6 +6604,22 @@ Appleshares access (Macintosh)
     Local handler for automated enrollment, standard version.
   </description>
 </file>
+<file>
+  <source>loncom/automation/batchcreatecourse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/batchcreatecourse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for batch creation of courses.
+  </description>
+</file>
+<file>
+  <source>loncom/automation/Autocreate.pl</source>Autocreate.pl
+  <target dist='default'>home/httpd/perl/Autocreate.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Script for automated course creation.
+  </description>
+</file>
 <fileglob>
     <glob>*</glob>
     <sourcedir>loncom/debugging_tools/</sourcedir>
@@ -6043,5 +6644,15 @@ unescape.pl;
 user_login_count.pl;
 </filenames>
 </fileglob>
+<file>
+<source>loncom/build/distprobe</source>
+<target dist='default'>home/httpd/perl/distprobe</target>
+<categoryname>script</categoryname>
+<description>
+for probing operating system flavor and version
+</description>
+<note>
+</note>
+</file>
 </files>
 </lpml>