--- doc/loncapafiles/loncapafiles.lpml	2005/08/11 14:43:31	1.447
+++ doc/loncapafiles/loncapafiles.lpml	2006/07/10 03:58:38	1.492
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.447 2005/08/11 14:43:31 albertel Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.492 2006/07/10 03:58:38 raeburn Exp $ -->
 
 <!--
 
@@ -546,6 +546,24 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/extensions</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jsMath extension files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/uncompressed</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jsMath files (uncompressed)</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/plugins</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jsMath plugin files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/helper</targetdir>
   <categoryname>server readonly</categoryname>
   <description>XML specifications for helpers</description>
@@ -576,6 +594,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/tex/de</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>German online help documentation tex files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/png</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation png files</description>
@@ -1120,6 +1144,23 @@ Meta file for generic resource for DOCS
 </description>
 </file>
 <file>
+<source>loncom/homework/templates/DropBox.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/DropBox.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for DOCS "Drop Box"
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/DropBox.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/DropBox.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for DOCS "Drop Box"
+</description>
+</file>
+
+<file>
 <source>loncom/homework/templates/examupload.problem</source>
 <target dist='default'>home/httpd/html/res/lib/templates/examupload.problem</target>
 <categoryname>interface file</categoryname>
@@ -1374,7 +1415,11 @@ SimpleMatching.problem.meta;
 SimpleRank.problem;
 SimpleRank.problem.meta;
 SimpleTrueFalse.problem;
-SimpleTrueFalse.problem.meta
+SimpleTrueFalse.problem.meta;
+organic.problem;
+organic.problem.meta;
+reaction.problem;
+reaction.problem.meta
 </filenames>
 </fileglob>
 <file>
@@ -1523,6 +1568,14 @@ Example:<br /><nobr /><tt>server ntp.msu
 </note>
 </file>
 <file>
+  <source>loncom/misc/archive_old_files.pl</source>
+  <target dist='default'>home/httpd/perl/archive_old_files.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+Batch script for compressing older .db files
+  </description>
+</file>
+<file>
 <source>loncom/metadata_database/searchcat.pl</source>
 <target dist='default'>home/httpd/perl/searchcat.pl</target>
 <categoryname>script</categoryname>
@@ -1574,6 +1627,14 @@ MySQL are included in their configuratio
 </description>
 </file>
 <file>
+  <source>loncom/debugging_tools/updateclasslist.pl</source>
+  <target dist='default'>home/httpd/perl/debug/updateclasslist.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+propagate the ids in ids.db to all course classlists
+  </description>
+</file>
+<file>
 <source>loncom/lonhttpd</source>
 <target dist='default'>home/httpd/perl/lonhttpd</target>
 <categoryname>script</categoryname>
@@ -1590,6 +1651,14 @@ small script to handle the start up of t
 </description>
 </file>
 <file>
+  <source>loncom/lonmaxima</source>
+  <target dist='default'>home/httpd/perl/lonmaxima</target>
+  <categoryname>script</categoryname>
+  <description>
+    manages the existance and talking to the maxima processes
+  </description>
+</file>
+<file>
     <source>loncom/request_ssl_key.sh</source>
     <target dist='default'>home/httpd/lonCerts/request_ssl_key.sh</target>
     <categoryname>script</categoryname>
@@ -1682,10 +1751,17 @@ echo 'pod2html lond'
 <file>
 <source dist='default'>loncom/build/CHECKRPMS.default</source>
 <source dist='fedora1 fedora2 fedora3 fedora4'>loncom/build/CHECKRPMS.fedora</source>
+<source dist='rhes4'>loncom/build/CHECKRPMS.rhel</source>
 <source dist='suse9.2 suse9.3 sles9'>loncom/build/CHECKRPMS.suse</source>
 <target dist='default'>home/httpd/cgi-bin/CHECKRPMS</target>
 <categoryname>script</categoryname>
 <description>CGI script that checks status of RPMs</description>
+<dependencies>
+loncom/build/CHECKRPMS.default;
+loncom/build/CHECKRPMS.fedora;
+loncom/build/CHECKRPMS.rhel;
+loncom/build/CHECKRPMS.suse;
+</dependencies>
 </file>
 <file>
 <source>loncom/cgi/loncron.pl</source>
@@ -2034,6 +2110,15 @@ Handler for periodically fetch new lines
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/longroupchat.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/longroupchat.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for generation of frameset for display of group chat
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonannounce.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonannounce.pm</target>
 <categoryname>handler</categoryname>
@@ -2052,6 +2137,15 @@ Handler to put up syllabus
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonrss.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrss.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for adding to and displaying RSS
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/homework/lonsimpleproblemedit.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonsimpleproblemedit.pm</target>
 <categoryname>handler</categoryname>
@@ -2486,12 +2580,14 @@ Additional_Help.tex;
 Ambiguous_Reference.tex;
 Analysis_Analyze_Over.tex;
 Analyze_Problem.tex;
+Answer_Date.tex;
 Annotation.tex;
 Authentication.tex;
 Auth_Options.tex;
 Authoring_Adding_Pictures.tex;
 Authoring_DataResponse.tex;
 Authoring_Dynamic_Plot_Axes.tex;
+Authoring_Dynamic_Plot_Color_Selection.tex;
 Authoring_Dynamic_Plot_Curve_Data.tex;
 Authoring_Dynamic_Plot_Curve_Function.tex;
 Authoring_Dynamic_Plot_Curve.tex;
@@ -2520,6 +2616,7 @@ Authoring_Response_Attributes.tex;
 Authoring_Responseparam_Parameter.tex;
 Authoring_Response_Tag_Intro.tex;
 Authoring_Scripting_Tags.tex;
+Authoring_Spreadsheet.tex;
 Authoring_Structure_Tags.tex;
 Authoring_XML_Intro.tex;
 Author_LON-CAPA_Introduction.tex;
@@ -2527,6 +2624,7 @@ Author_Manual_Title_Page.tex;
 Author_Numerical_and_Formula.tex;
 Author_Remote_Control.tex;
 Bookmarks.tex;
+Browsing_Resources.tex;
 Bugzilla.tex;
 Caching.tex;
 Calendar_Add_Announcement.tex;
@@ -2534,17 +2632,23 @@ Calendar_Remove_Announcement.tex;
 Calling_Functions.tex;
 CAPA_LON-CAPA_function_diffs.tex;
 Cascading_Parameters.tex;
+Catalog_Info.tex;
 Change_Colors.tex;
 Change_Password.tex;
 Chart_Description.tex;
 Change_Discussion_Display.tex;
+Chart_Enrollment_Status.tex;
 Chart_Output_Data.tex;
 Chart_Output_Formats.tex;
+Chart_Sections.tex;
+Chart_Sequences.tex;
+Chart_Student_Data.tex;
 Chatting.tex;
 Coauthor.tex;
 Construction_Space_Overview.tex;
 Course_Add_Other.tex;
 Course_Add_Student.tex;
+Course_Automated_Enrollment.tex;
 Course_Broadcast_Message.tex;
 Course_Change_Privileges.tex;
 Course_Chart_To_Excel.tex;
@@ -2558,6 +2662,7 @@ Course_Discussion_Board.tex;
 Course_Drop_Student.tex;
 Course_Edit_Content.tex;
 Course_Editing_Custom_Roles.tex;
+Course_Environment.tex;
 Course_Extending_Due_Dates.tex;
 Course_Face_To_Face_Records.tex;
 Course_Feedback_Addresses.tex;
@@ -2568,6 +2673,7 @@ Course_Maximum_Collaborators.tex;
 Course_Message_Access.tex;
 Course_Modify_Student_Data.tex;
 Course_Parameter_Levels.tex;
+Course_Parameter_Table_Mode.tex;
 Course_Problem_Weight.tex;
 Course_Set_Start_End_Date.tex;
 Course_Setting_Parameters.tex;
@@ -2584,6 +2690,7 @@ Creating_Online_Problems.tex;
 Creating_Radio_Response_Problems.tex;
 Developer_Manual_Title_Page.tex;
 Developer_Tutorial.tex;
+Distribute_Messages.tex;
 Docs_About_Bulletin_Board.tex;
 Docs_About_My_Personal_Info.tex;
 Docs_About_Simple_Page.tex;
@@ -2597,6 +2704,7 @@ Docs_Alternatives.tex;
 Docs_Check_Resource_Versions.tex;
 Docs_Creating_From_Template.tex;
 Docs_Dump_Course_Docs.tex;
+Docs_Export_Course_Docs.tex;
 Docs_Editing_Templated_Pages.tex;
 Docs_Essay.tex;
 Docs_Importing_LON-CAPA_Resource.tex;
@@ -2613,9 +2721,15 @@ Docs_String_Response.tex;
 Docs_Supplemental.tex;
 Docs_Uploading_From_Harddrive.tex;
 Docs_Verify_Content.tex;
+Due_Date.tex;
 Edit_Syllabus.tex;
 exam_basics.tex;
 Exploring_Your_Course.tex;
+Feedback_Author.tex;
+Feedback_Content.tex;
+Feedback_Discuss_Anon.tex;
+Feedback_Discussion.tex;
+Feedback_Policy.tex;
 Finding_Resources.tex;
 Foils.tex;
 Formula_Response_Adv_Intro.tex;
@@ -2626,6 +2740,13 @@ Formula_Response_Sampling.tex;
 Formula_Tolerance.tex;
 General_Intro.tex;
 Generation.tex;
+Grade_All.tex;
+Grade_Intro.tex;
+Grade_One.tex;
+Grade_Scantron.tex;
+Grade_Sequence.tex;
+Grade_Upload.tex;
+Grade_Verify.tex;
 GradingOptions.tex;
 Greek_Symbols.tex;
 Guts_Apache_Env.tex;
@@ -2659,6 +2780,7 @@ Numerical_Response_Simple_Example.tex;
 Numerical_Response_Tutorial_A.tex;
 Numerical_Response_Units.tex;
 numerical_wrong_answers.tex;
+Open_Date.tex;
 Option_Response_Concept_Group_Example.tex;
 Option_Response_Matching_Example.tex;
 Option_Response_Problem_Creation.tex;
@@ -2667,6 +2789,8 @@ Option_Response_Problem_Parts.tex;
 Option_Response_Problems.tex;
 Option_Response_Simple.tex;
 Other_Symbols.tex;
+Parameter_Helper.tex;
+Parameter_Overview.tex;
 Part_Tag_Edit_Help.tex;
 Personal_Info_Page.tex;
 Physical_Units.tex;
@@ -2674,18 +2798,22 @@ Prefs_About_Me.tex;
 Prefs_Forwarding.tex;
 Prefs_Language.tex;
 Prefs_Screen_Name_Nickname.tex;
+Print_Library.tex;
 Print_Options.tex;
 Print_Resource.tex;
+Print_Tricks.tex;
 Problem_Editor_Testing_Area.tex;
 Problem_Editor_XML_Index.tex;
 Problem_LON-CAPA_Functions.tex;
 Problem_LON-CAPA_Image_Options.tex;
+Problem_Parameters.tex;
 Problem_Types.tex;
 Publishing_A_Resource.tex;
 Publishing_Author_Tutorial_Segue.tex;
 Publishing_Copyright.tex;
 Publishing_Intro.tex;
 Publishing_Keywords.tex;
+Quick_Grades_Description.tex;
 Quick_Grades_Possibly_Correct.tex;
 Radio_Response_Problems.tex;
 Radio_Response_Randomization.tex;
@@ -2740,8 +2868,11 @@ Statistics_Sequence.tex;
 Statistics_Cache.tex;
 String_Response_Problem_Creation.tex;
 String_Response_Problems.tex;
+Submission_Time_Analysis.tex;
 Syllabus_ExtLink.tex;
 Syllabus_URLs.tex;
+Table_Mode.tex;
+Testbank_Formatting.tex;
 TEXDropEmptyColumns_attribute.tex;
 TEXitemgroupwidth_attribute.tex;
 TEXitemgroup_attribute.tex;
@@ -2749,20 +2880,37 @@ TEXlayout_attribute.tex;
 TEXsize_attribute.tex;
 TEXtype_attribute.tex;
 TEXwidth_attribute.tex;
+Tries.tex;
 Tolerance.tex;
 Uploaded_Templates_PublicView.tex;
 Uploaded_Templates_TextBoxes.tex;
+Uploading_File_Options.tex;
 Variable_Naming_Conventions.tex;
 Variables_in_Scripts.tex;
 Variables_in_the_Answer_Block.tex;
 Variables_in_the_Text_Block.tex;
 Variable_Tutorial_A.tex;
+View_All_Messages.tex;
+View_Critical_Messages.tex;
 What_Is_LON-CAPA.tex;
 Why_LON-CAPA.tex;
 </filenames>
 </fileglob>
 <fileglob>
 <glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/tex/de/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/tex/de/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+German Tex files for the help system
+</description>
+<filenames>
+Tries.tex;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
 <sourcedir>loncom/html/adm/help/tex/ru/</sourcedir>
 <targetdir dist='default'>
 home/httpd/html/adm/help/tex/ru/</targetdir>
@@ -2793,6 +2941,12 @@ Authoring_Adding_Pictures.tex;
 A gdbm file containing a label->tex file hash.
 </description>
 <status>works/unverified</status>
+<build trigger='always run'>
+loncom/build/rebuild_label_hash.sh
+</build>
+<dependencies>
+rebuild_label_hash.sh
+</dependencies>
 </file>
 <fileglob>
   <glob>*</glob>
@@ -2898,6 +3052,15 @@ This module provides detailed analysis a
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/statistics/longradinganalysis.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/longradinganalysis.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    This module provides detailed analysis and raw data for submissions of various problem types.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/statistics/lonsubmissiontimeanalysis.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonsubmissiontimeanalysis.pm
 </target>
@@ -3013,6 +3176,15 @@ tag handlers needed by externalresponse.
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/gradesubmission.pl</source>
+  <target dist='default'>home/httpd/cgi-bin/gradesubmission.pl</target>
+  <categoryname>handler</categoryname>
+  <description>
+Example script for use with external response.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/lonpubdir.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpubdir.pm</target>
 <categoryname>handler</categoryname>
@@ -3224,6 +3396,14 @@ Contains the &mt access function to Loca
 </description>
 </file>
 <file>
+  <source>loncom/localize/lonlocalize.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonlocalize.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+handler for &mt()ing static files
+  </description>
+</file>
+<file>
 <source>loncom/localize/localize.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/localize.pm</target>
 <categoryname>handler</categoryname>
@@ -3399,14 +3579,104 @@ jsMath is a Javascript solution to conve
 black.gif;
 blank.gif;
 COPYING.txt;
+jsMath-BaKoMa-fonts.js;
+jsMath-autoload.html;
+jsMath-controls.html;
 jsMath-fallback-mac.js;
 jsMath-fallback-mac-mozilla.js;
 jsMath-fallback-mac-msie.js;
 jsMath-fallback-pc.js;
+jsMath-fallback-symbols.js;
 jsMath-fallback-unix.js;
+jsMath-global-controls.html;
+jsMath-global.html;
 jsMath.js;
+jsMath-loader.html;
+jsMath-loader-omniweb4.js;
 jsMath-mozilla.js;
 jsMath-msie-mac.js;
+jsMath-old-browsers.js;
+  </filenames>
+</fileglob>
+
+<file>
+  <source>loncom/html/adm/jsMath/jsMath-fonts-1.3.zip</source>
+  <target dist='default'>home/httpd/html/adm/jsMath/fonts/</target>
+  <categoryname>script</categoryname>
+  <description>
+    Dynamically converts JME strings into either a png or ps file.
+  </description>
+  <installscript>
+commands /home/httpd/html/adm/jsMath
+  </installscript>
+  <dependencies>
+loncom/html/adm/jsMath/commands;
+loncom/html/adm/jsMath/jsMath-fonts-1.3.zip;
+  </dependencies>
+</file>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jsMath/extensions/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/extensions/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Additional jsMath functionality that can be used when needed.
+  </description>
+  <filenames>
+AMSsymbols.js;
+HTML.js;
+bbox.js;
+font.js;
+boldsymbol.js;
+double-click.js;
+fbox.js;
+leaders.js;
+mathchoice.js;
+mimeTeX.js;
+moreArrows.js;
+newcommand.js;
+underset-overset.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jsMath/plugins/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/plugins/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jsMath is a Javascript solution to converting TeX to something the browser can see
+  </description>
+  <filenames>
+autoload.js;
+CHMmode.js;
+global.js;
+mimeTeX.js;
+noCache.js;
+noGlobal.js;
+noImageFonts.js;
+spriteImageFonts.js;
+tex2math.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jsMath/uncompressed/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/uncompressed/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+the jsMath source files not compressed for increasing download speed (not used by lon-capa directly)
+  </description>
+  <filenames>
+def.js;
+font.js;
+jsMath-fallback-mac.js;
+jsMath-fallback-pc.js;
+jsMath-fallback-symbols.js;
+jsMath-fallback-unix.js;
+jsMath.js;
   </filenames>
 </fileglob>
 
@@ -3510,6 +3780,15 @@ echo 'pod2html lonnavmaps.pm'
 </dependencies>
 </file>
 <file>
+<source>loncom/interface/lonselstudent.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonselstudent.pm</target>
+<categoryname>standard</categoryname>
+<description>
+re-usable student selection subs.
+</description>
+<status>testing/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonhelper.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonhelper.pm</target>
 <categoryname>handler</categoryname>
@@ -3546,6 +3825,15 @@ Helper to resetting a student's first ac
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/html/adm/helper/newslot.helper</source>
+  <target dist='default'>home/httpd/html/adm/helper/newslot.helper</target>
+  <categoryname>handler</categoryname>
+  <description>
+Slot creation and editing helper.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonquickgrades.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonquickgrades.pm</target>
 <categoryname>handler</categoryname>
@@ -3660,6 +3948,43 @@ Allows users (including students) to vie
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/loncoursegroups.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncoursegroups.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows course coordinators to create groups, modify existing groups (including    
+adding, expiring or deleting group members, or modifying group member privileges.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/longroup.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/longroup.pm</target>
+<categoryname>handler</categoryname>
+<description>
+General routines used to gather information about courses in a group, and their settings, and also to perform auto-group adds/drops when a user's role assignment changes.    
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/groupboards.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/groupboards.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Displays bulletin boards in a group and provides a mechanism for users with board creation privileges in a group to create new bulletin boards.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/grouproster.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/grouproster.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Display group membership information. Type of information available depends on group privileges of the user.  
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonmsg.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonmsg.pm</target>
 <categoryname>handler</categoryname>
@@ -3669,12 +3994,20 @@ author_res_msg - send message to resourc
 user_crit_msg - send a critical message to a user. A critical message
 will require acknowledgment by the recipient and the sender will be notified.
 user_crit_received - routine to trigger acknowledgment.
-statuschange - change the status of a message (read, replied, forwarded, etc).
-The handler also displays messages, has routines to reply, etc.
 </description>
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/lonmsgdisplay.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmsgdisplay.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+statuschange - change the status of a message (read, replied, forwarded, etc).
+The handler displays messages, has routines to reply, etc.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/homework/hint.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/hint.pm</target>
 <categoryname>handler</categoryname>
@@ -3839,6 +4172,15 @@ Has routines which control the remote co
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/lonmainmenu.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmainmenu.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Displays the Main menu
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonremote.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonremote.pm</target>
 <categoryname>handler</categoryname>
@@ -4195,6 +4537,15 @@ handles request to the CAPA homework pro
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/lonmaxima.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmaxima.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    routines to simplify talking to the maxima client
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/Safe.pm</source>
 <target dist='default'>home/httpd/lib/perl/Safe.pm</target>
 <categoryname>handler</categoryname>
@@ -4313,6 +4664,15 @@ Encryption and decryption of URIs
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/lonencurl.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonencurl.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler that takes care of decrypting request URL's
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/man/Apache__lonracc.3</source>
 <target dist='default'>usr/man/man3/Apache::lonracc.3</target>
 <categoryname>doc</categoryname>
@@ -4403,6 +4763,13 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/restrictedaccess.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/restrictedaccess.pm</target>
+<categoryname>handler</categoryname>
+<description>Passphrase entry form and verification for access to passphrase-protected portfolio files</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/londatecheck.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londatecheck.pm</target>
 <categoryname>handler</categoryname>
@@ -4410,6 +4777,13 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/auth/publiccheck.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/publiccheck.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Checks if resource is public and allows unauthenticated access if it is.</description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/lonlogout.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonlogout.pm</target>
 <categoryname>handler</categoryname>
@@ -4417,6 +4791,34 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/auth/migrateuser.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/migrateuser.pm</target>
+  <categoryname>handler</categoryname>
+  <description>auto logsin a remote user</description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/switchserver.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/switchserver.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Setups the transfer of a user between servers</description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/checkauthen.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/checkauthen.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Checks if a user's cookie exists and is valid</description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/simpleauthen.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/simpleauthen.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Always returns DENIED</description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/lonnet/perl/lonrep.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonrep.pm</target>
 <categoryname>handler</categoryname>
@@ -4830,7 +5232,8 @@ lonlogo_broken.gif;
 lonlogo_broken_tsp.gif;
 lonlogo_broken.eps;
 lonlogo_broken.jpg;
-lonlogo_broken.mov
+lonlogo_broken.mov;
+genericstudent_tn.gif
 </filenames>
 </fileglob>
 <fileglob>
@@ -4886,6 +5289,7 @@ frowny.gif;
 gif.gif;
 gif_big.gif;
 header.gif;
+header.png;
 helpdesk.gif;
 helpgateway.gif;
 hrrm.gif;
@@ -4923,6 +5327,7 @@ mov_big.gif;
 move_up.gif;
 move_down.gif;
 navmap.correct.gif;
+navmap.partial.gif;
 navmap.ellipsis.gif;
 navmap.open.gif;
 navmap.page.open.gif;
@@ -5267,6 +5672,7 @@ mimetex.h;
 mimetex.html;
 README;
 texfonts.h;
+LICENSE;
 </dependencies>
 </file>
 <fileglob>
@@ -5350,6 +5756,23 @@ Provides many functions for the &lt;scri
 Functions are documented in CVS:loncapa/doc/homework/homework5.html.
 </description>
 </file>
+
+<file>
+  <source>loncom/homework/task.css</source>
+  <target dist='default'>home/httpd/html/res/adm/includes/task.css</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Style definitions for task display
+  </description>
+</file>
+<file>
+  <source>loncom/homework/task_grading.js</source>
+  <target dist='default'>home/httpd/html/res/adm/includes/task_grading.js</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Javascript to make the grading screen of task easier to use
+  </description>
+</file>
 <file>
 <source>loncom/homework/capa.units</source>
 <target dist='default'>home/httpd/html/res/adm/includes/capa.units</target>
@@ -5384,6 +5807,7 @@ headertccfl.jpg;
 header_fsu.jpg;
 header_fsuK12.jpg;
 headerhope.jpg;
+jmsbanner.jpg;
 </filenames>
 </fileglob>
 <fileglob>
@@ -5421,6 +5845,7 @@ hope.gif;
 vcu.gif;
 lsd.gif;
 msu.gif;
+jms.gif;
 nsdl.gif;
 pmm.gif;
 sunysb.gif;
@@ -5482,6 +5907,7 @@ psuerie.tab;
 redford.tab;
 cmich.tab;
 ifusp.tab;
+jms.tab;
 ucsc.tab;
 uiuc.tab;
 UNICAMP.tab;
@@ -5497,6 +5923,7 @@ worf.tab;
 tccfl.tab;
 harvard.tab;
 uga.tab;
+tmcc.tab;
 </filenames>
 </fileglob>
 <fileglob>
@@ -5635,6 +6062,7 @@ fdbk.gif;
 feedback.gif;
 forw.gif;
 grds.gif;
+grps.gif;
 group.gif;
 help.gif;
 info.gif;
@@ -5646,6 +6074,7 @@ ledon.gif;
 ledsend.gif;
 list.gif;
 logout.gif;
+mail.gif;
 mcrs.gif;
 mrk.gif;
 nav.gif;
@@ -5678,6 +6107,14 @@ vbkm.gif;
 </filenames>
 </fileglob>
 <file>
+<source>loncom/html/res/adm/pages/math_example.tex</source>
+<target dist='default'>home/httpd/html/res/adm/pages/math_example.tex</target>
+<categoryname>interface file</categoryname>
+<description>
+ file with an example math equation in it.
+</description>
+</file>
+<file>
 <source>loncom/html/res/adm/pages/imgmaps.html</source>
 <target dist='default'>home/httpd/html/res/adm/pages/imgmaps.html</target>
 <categoryname>interface file</categoryname>
@@ -6015,6 +6452,31 @@ Appleshares access (Macintosh)
 </description>
 </file>
 <file>
+  <source>loncom/interface/loncss.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/loncss.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Generates standard LON-CAPA CSS
+  </description>
+</file>
+<file>
+  <source>loncom/LONCAPA.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Some basic Lon-CAPA functionality
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonnotify.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonnotify.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface for Domain Coordinators to (a) send broadcast e-mail to groups 
+of users, and (b) to display e-mail of this type sent in the past.
+  </description>
+</file>
+<file>
   <source>loncom/interface/lonhelpmenu.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonhelpmenu.pm</target>
   <categoryname>handler</categoryname>