--- doc/loncapafiles/loncapafiles.lpml	2005/06/03 19:50:07	1.428
+++ doc/loncapafiles/loncapafiles.lpml	2005/12/07 19:17:50	1.463
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.428 2005/06/03 19:50:07 raeburn Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.463 2005/12/07 19:17:50 albertel Exp $ -->
 
 <!--
 
@@ -534,6 +534,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jmol</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Jmol files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/jsMath</targetdir>
   <categoryname>server readonly</categoryname>
   <description>jsMath support files</description>
@@ -1368,7 +1374,11 @@ SimpleMatching.problem.meta;
 SimpleRank.problem;
 SimpleRank.problem.meta;
 SimpleTrueFalse.problem;
-SimpleTrueFalse.problem.meta
+SimpleTrueFalse.problem.meta;
+organic.problem;
+organic.problem.meta;
+reaction.problem;
+reaction.problem.meta
 </filenames>
 </fileglob>
 <file>
@@ -1585,7 +1595,7 @@ small script to handle the start up of t
 </file>
 <file>
     <source>loncom/request_ssl_key.sh</source>
-    <target dist='default'>home/httpd/lonCerts</target>
+    <target dist='default'>home/httpd/lonCerts/request_ssl_key.sh</target>
     <categoryname>script</categoryname>
     <description>
         Script that requests a Lon-CAPA ssl key.
@@ -1675,10 +1685,18 @@ echo 'pod2html lond'
 </file>
 <file>
 <source dist='default'>loncom/build/CHECKRPMS.default</source>
-<source dist='fedora1 fedora2 fedora3'>loncom/build/CHECKRPMS.fedora</source>
+<source dist='fedora1 fedora2 fedora3 fedora4'>loncom/build/CHECKRPMS.fedora</source>
+<source dist='rhes4'>loncom/build/CHECKRPMS.rhel</source>
+<source dist='suse9.2 suse9.3 sles9'>loncom/build/CHECKRPMS.suse</source>
 <target dist='default'>home/httpd/cgi-bin/CHECKRPMS</target>
 <categoryname>script</categoryname>
 <description>CGI script that checks status of RPMs</description>
+<dependencies>
+CHECKRPMS.default;
+CHECKRPMS.fedora;
+CHECKRPMS.rhel;
+CHECKRPMS.suse;
+</dependencies>
 </file>
 <file>
 <source>loncom/cgi/loncron.pl</source>
@@ -2045,6 +2063,15 @@ Handler to put up syllabus
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonrss.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrss.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for adding to and displaying RSS
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/homework/lonsimpleproblemedit.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonsimpleproblemedit.pm</target>
 <categoryname>handler</categoryname>
@@ -2479,12 +2506,14 @@ Additional_Help.tex;
 Ambiguous_Reference.tex;
 Analysis_Analyze_Over.tex;
 Analyze_Problem.tex;
+Answer_Date.tex;
 Annotation.tex;
 Authentication.tex;
 Auth_Options.tex;
 Authoring_Adding_Pictures.tex;
 Authoring_DataResponse.tex;
 Authoring_Dynamic_Plot_Axes.tex;
+Authoring_Dynamic_Plot_Color_Selection.tex;
 Authoring_Dynamic_Plot_Curve_Data.tex;
 Authoring_Dynamic_Plot_Curve_Function.tex;
 Authoring_Dynamic_Plot_Curve.tex;
@@ -2520,6 +2549,7 @@ Author_Manual_Title_Page.tex;
 Author_Numerical_and_Formula.tex;
 Author_Remote_Control.tex;
 Bookmarks.tex;
+Browsing_Resources.tex;
 Bugzilla.tex;
 Caching.tex;
 Calendar_Add_Announcement.tex;
@@ -2527,17 +2557,23 @@ Calendar_Remove_Announcement.tex;
 Calling_Functions.tex;
 CAPA_LON-CAPA_function_diffs.tex;
 Cascading_Parameters.tex;
+Catalog_Info.tex;
 Change_Colors.tex;
 Change_Password.tex;
 Chart_Description.tex;
 Change_Discussion_Display.tex;
+Chart_Enrollment_Status.tex;
 Chart_Output_Data.tex;
 Chart_Output_Formats.tex;
+Chart_Sections.tex;
+Chart_Sequences.tex;
+Chart_Student_Data.tex;
 Chatting.tex;
 Coauthor.tex;
 Construction_Space_Overview.tex;
 Course_Add_Other.tex;
 Course_Add_Student.tex;
+Course_Automated_Enrollment.tex;
 Course_Broadcast_Message.tex;
 Course_Change_Privileges.tex;
 Course_Chart_To_Excel.tex;
@@ -2551,6 +2587,7 @@ Course_Discussion_Board.tex;
 Course_Drop_Student.tex;
 Course_Edit_Content.tex;
 Course_Editing_Custom_Roles.tex;
+Course_Environment.tex;
 Course_Extending_Due_Dates.tex;
 Course_Face_To_Face_Records.tex;
 Course_Feedback_Addresses.tex;
@@ -2561,6 +2598,7 @@ Course_Maximum_Collaborators.tex;
 Course_Message_Access.tex;
 Course_Modify_Student_Data.tex;
 Course_Parameter_Levels.tex;
+Course_Parameter_Table_Mode.tex;
 Course_Problem_Weight.tex;
 Course_Set_Start_End_Date.tex;
 Course_Setting_Parameters.tex;
@@ -2577,6 +2615,7 @@ Creating_Online_Problems.tex;
 Creating_Radio_Response_Problems.tex;
 Developer_Manual_Title_Page.tex;
 Developer_Tutorial.tex;
+Distribute_Messages.tex;
 Docs_About_Bulletin_Board.tex;
 Docs_About_My_Personal_Info.tex;
 Docs_About_Simple_Page.tex;
@@ -2590,6 +2629,7 @@ Docs_Alternatives.tex;
 Docs_Check_Resource_Versions.tex;
 Docs_Creating_From_Template.tex;
 Docs_Dump_Course_Docs.tex;
+Docs_Export_Course_Docs.tex;
 Docs_Editing_Templated_Pages.tex;
 Docs_Essay.tex;
 Docs_Importing_LON-CAPA_Resource.tex;
@@ -2606,9 +2646,15 @@ Docs_String_Response.tex;
 Docs_Supplemental.tex;
 Docs_Uploading_From_Harddrive.tex;
 Docs_Verify_Content.tex;
+Due_Date.tex;
 Edit_Syllabus.tex;
 exam_basics.tex;
 Exploring_Your_Course.tex;
+Feedback_Author.tex;
+Feedback_Content.tex;
+Feedback_Discuss_Anon.tex;
+Feedback_Discussion.tex;
+Feedback_Policy.tex;
 Finding_Resources.tex;
 Foils.tex;
 Formula_Response_Adv_Intro.tex;
@@ -2619,6 +2665,13 @@ Formula_Response_Sampling.tex;
 Formula_Tolerance.tex;
 General_Intro.tex;
 Generation.tex;
+Grade_All.tex;
+Grade_Intro.tex;
+Grade_One.tex;
+Grade_Scantron.tex;
+Grade_Sequence.tex;
+Grade_Upload.tex;
+Grade_Verify.tex;
 GradingOptions.tex;
 Greek_Symbols.tex;
 Guts_Apache_Env.tex;
@@ -2652,6 +2705,7 @@ Numerical_Response_Simple_Example.tex;
 Numerical_Response_Tutorial_A.tex;
 Numerical_Response_Units.tex;
 numerical_wrong_answers.tex;
+Open_Date.tex;
 Option_Response_Concept_Group_Example.tex;
 Option_Response_Matching_Example.tex;
 Option_Response_Problem_Creation.tex;
@@ -2660,6 +2714,8 @@ Option_Response_Problem_Parts.tex;
 Option_Response_Problems.tex;
 Option_Response_Simple.tex;
 Other_Symbols.tex;
+Parameter_Helper.tex;
+Parameter_Overview.tex;
 Part_Tag_Edit_Help.tex;
 Personal_Info_Page.tex;
 Physical_Units.tex;
@@ -2667,18 +2723,22 @@ Prefs_About_Me.tex;
 Prefs_Forwarding.tex;
 Prefs_Language.tex;
 Prefs_Screen_Name_Nickname.tex;
+Print_Library.tex;
 Print_Options.tex;
 Print_Resource.tex;
+Print_Tricks.tex;
 Problem_Editor_Testing_Area.tex;
 Problem_Editor_XML_Index.tex;
 Problem_LON-CAPA_Functions.tex;
 Problem_LON-CAPA_Image_Options.tex;
+Problem_Parameters.tex;
 Problem_Types.tex;
 Publishing_A_Resource.tex;
 Publishing_Author_Tutorial_Segue.tex;
 Publishing_Copyright.tex;
 Publishing_Intro.tex;
 Publishing_Keywords.tex;
+Quick_Grades_Description.tex;
 Quick_Grades_Possibly_Correct.tex;
 Radio_Response_Problems.tex;
 Radio_Response_Randomization.tex;
@@ -2733,8 +2793,10 @@ Statistics_Sequence.tex;
 Statistics_Cache.tex;
 String_Response_Problem_Creation.tex;
 String_Response_Problems.tex;
+Submission_Time_Analysis.tex;
 Syllabus_ExtLink.tex;
 Syllabus_URLs.tex;
+Table_Mode.tex;
 TEXDropEmptyColumns_attribute.tex;
 TEXitemgroupwidth_attribute.tex;
 TEXitemgroup_attribute.tex;
@@ -2742,6 +2804,7 @@ TEXlayout_attribute.tex;
 TEXsize_attribute.tex;
 TEXtype_attribute.tex;
 TEXwidth_attribute.tex;
+Tries.tex;
 Tolerance.tex;
 Uploaded_Templates_PublicView.tex;
 Uploaded_Templates_TextBoxes.tex;
@@ -2750,6 +2813,8 @@ Variables_in_Scripts.tex;
 Variables_in_the_Answer_Block.tex;
 Variables_in_the_Text_Block.tex;
 Variable_Tutorial_A.tex;
+View_All_Messages.tex;
+View_Critical_Messages.tex;
 What_Is_LON-CAPA.tex;
 Why_LON-CAPA.tex;
 </filenames>
@@ -3006,6 +3071,15 @@ tag handlers needed by externalresponse.
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/gradesubmission.pl</source>
+  <target dist='default'>home/httpd/perl/cgi-bin/gradesubmission.pl</target>
+  <categoryname>handler</categoryname>
+  <description>
+Example script for use with external response.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/lonpubdir.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpubdir.pm</target>
 <categoryname>handler</categoryname>
@@ -3354,6 +3428,23 @@ smiles.gif
   </filenames>
 </fileglob>
 
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jmol/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jmol/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    Jmol files, for displaying structures
+  </description>
+  <filenames>
+COPYRIGHT.txt;
+JmolApplet.jar;
+Jmol.js;
+LICENSE.txt;
+README.txt
+  </filenames>
+</fileglob>
+
 <file>
   <source>loncom/homework/convertjme.pl</source>
   <target dist='default'>home/httpd/cgi-bin/convertjme.pl</target>
@@ -3379,6 +3470,7 @@ jsMath-fallback-mac.js;
 jsMath-fallback-mac-mozilla.js;
 jsMath-fallback-mac-msie.js;
 jsMath-fallback-pc.js;
+jsMath-fallback-symbols.js;
 jsMath-fallback-unix.js;
 jsMath.js;
 jsMath-mozilla.js;
@@ -3387,6 +3479,38 @@ jsMath-msie-mac.js;
 </fileglob>
 
 <file>
+  <source>loncom/html/adm/jsMath/jsMath-fonts-1.2.zip</source>
+  <target dist='default'>home/httpd/html/adm/jsMath</target>
+  <categoryname>script</categoryname>
+  <description>
+    Dynamically converts JME strings into either a png or ps file.
+  </description>
+  <build trigger='always run'>
+loncom/html/adm/jsMath/commands /home/httpd/html/adm/jsMath
+  </build>
+  <dependencies>
+commands;
+jsMath-fonts-1.2.zip;
+  </dependencies>
+</file>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jsMath/plugins</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/plugins</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jsMath is a Javascript solution to converting TeX to something the browser can see
+  </description>
+  <filenames>
+autoload.js;
+mimeTeX.js;
+noImageFonts.js;
+tex2math.js;
+  </filenames>
+</fileglob>
+
+<file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
 <categoryname>handler</categoryname>
@@ -3522,6 +3646,15 @@ Helper to resetting a student's first ac
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/html/adm/helper/newslot.helper</source>
+  <target dist='default'>home/httpd/html/adm/helper/newslot.helper</target>
+  <categoryname>handler</categoryname>
+  <description>
+Slot creation and editing helper.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonquickgrades.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonquickgrades.pm</target>
 <categoryname>handler</categoryname>
@@ -3636,6 +3769,16 @@ Allows users (including students) to vie
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/loncoursegroups.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncoursegroups.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows course coordinators to create groups, modify existing groups (including    
+adding, expiring or deleting group members, or modifying group member privileges.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonmsg.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonmsg.pm</target>
 <categoryname>handler</categoryname>
@@ -4393,6 +4536,27 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/auth/migrateuser.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/migrateuser.pm</target>
+  <categoryname>handler</categoryname>
+  <description>auto logsin a remote user</description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/switchserver.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/switchserver.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Setups the transfer of a user between servers</description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/checkauthen.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/checkauthen.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Checks if a user's cookie exists and is valid</description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/lonnet/perl/lonrep.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonrep.pm</target>
 <categoryname>handler</categoryname>
@@ -4862,6 +5026,7 @@ frowny.gif;
 gif.gif;
 gif_big.gif;
 header.gif;
+header.png;
 helpdesk.gif;
 helpgateway.gif;
 hrrm.gif;
@@ -4941,6 +5106,8 @@ srvhalf.gif;
 srvnull.gif;
 survey.gif;
 survey_big.gif;
+task.gif;
+task_big.gif;
 tex.gif;
 tex_big.gif;
 tth.gif;
@@ -5141,14 +5308,15 @@ CVS users.  (You can safely rely on the
 present on your system... don't worry about warnings
 related to this file during the build process.)
 </note>
-<build trigger='run if dependencies change'>
+<build trigger='always run'>
 modules/TexConvert/tthperl/commands
 </build>
 <status>works/unverified</status>
-<privatedependencies>
-../tthdynamic/tthfunc.c;
-../ttmdynamic/ttmfunc.c
-</privatedependencies>
+<dependencies>
+commands;
+compiles/tth.so.i386;
+compiles/tth.so.x86_64
+</dependencies>
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.pm</source>
@@ -5232,6 +5400,15 @@ cgi binary for doing TeX -> math transla
 loncom/cgi/mimeTeX/commands
 </build>
 <dependencies>
+commands;
+gfuntype.c;
+gifsave.c;
+mimetex.c;
+mimetex.h;
+mimetex.html;
+README;
+texfonts.h;
+LICENSE;
 </dependencies>
 </file>
 <fileglob>
@@ -5346,6 +5523,9 @@ student.jpg;
 <filenames>
 headermsu.jpg;
 headertccfl.jpg;
+header_fsu.jpg;
+header_fsuK12.jpg;
+headerhope.jpg;
 </filenames>
 </fileglob>
 <fileglob>
@@ -5378,6 +5558,8 @@ unihalle.gif;
 wscc.gif;
 cps.gif;
 fsu.gif;
+fsuK12.gif;
+hope.gif;
 vcu.gif;
 lsd.gif;
 msu.gif;
@@ -5399,6 +5581,8 @@ huji.gif;
 ifusp.gif;
 ucsc.gif;
 uiuc.gif;
+uiucheader.gif;
+koinonia.gif;
 waverly.gif;
 cmich.gif;
 UNICAMP.gif;
@@ -5415,6 +5599,7 @@ headerharvard.gif;
 harvard.gif;
 uga.gif;
 headeruga.gif;
+covenantchristianhs.gif;
 </filenames>
 </fileglob>
 <fileglob>
@@ -5431,6 +5616,7 @@ csm.tab;
 huji.tab;
 nau.tab;
 nagoya.tab;
+koinonia.tab;
 kanazawa.tab;
 colorado.tab;
 acadiau.tab;
@@ -5444,6 +5630,8 @@ UNICAMP.tab;
 lakefenton.tab;
 grandblanc.tab;
 fsu.tab;
+fsuK12.tab;
+hope.tab;
 vcu.tab;
 sfu.tab;
 wmston.tab;
@@ -5451,6 +5639,7 @@ worf.tab;
 tccfl.tab;
 harvard.tab;
 uga.tab;
+tmcc.tab;
 </filenames>
 </fileglob>
 <fileglob>
@@ -5540,7 +5729,6 @@ prt_pt.gif;
 res_pt.gif;
 roles_pt.gif;
 sbkm_pt.gif;
-sctr.gif;
 spacer_pt.gif;
 sprs_pt.gif;
 src_pt.gif;
@@ -5590,6 +5778,7 @@ fdbk.gif;
 feedback.gif;
 forw.gif;
 grds.gif;
+grps.gif;
 group.gif;
 help.gif;
 info.gif;
@@ -5601,9 +5790,11 @@ ledon.gif;
 ledsend.gif;
 list.gif;
 logout.gif;
+mail.gif;
 mcrs.gif;
 mrk.gif;
 nav.gif;
+new.gif;
 next.gif;
 nothumb.gif;
 parm.gif;
@@ -5621,6 +5812,7 @@ res.gif;
 roles.gif;
 rtrv.gif;
 sbkm.gif;
+sctr.gif;
 spacer.gif;
 sprs.gif;
 src.gif;
@@ -5631,6 +5823,14 @@ vbkm.gif;
 </filenames>
 </fileglob>
 <file>
+<source>loncom/html/res/adm/pages/math_example.tex</source>
+<target dist='default'>home/httpd/html/res/adm/pages/math_example.tex</target>
+<categoryname>interface file</categoryname>
+<description>
+ file with an example math equation in it.
+</description>
+</file>
+<file>
 <source>loncom/html/res/adm/pages/imgmaps.html</source>
 <target dist='default'>home/httpd/html/res/adm/pages/imgmaps.html</target>
 <categoryname>interface file</categoryname>
@@ -5832,7 +6032,7 @@ javascript for handling client-side inte
 </file>
 <file>
 <source dist='default'>loncom/build/CHECKRPMS.default</source>
-<source dist='fedora1 fedora2 fedora3'>loncom/build/CHECKRPMS.fedora</source>
+<source dist='fedora1 fedora2 fedora3 fedora4'>loncom/build/CHECKRPMS.fedora</source>
 <target dist='default'>usr/local/loncapa/bin/CHECKRPMS</target>
 <categoryname>system script</categoryname>
 <description>
@@ -5937,6 +6137,7 @@ file that allows setuid password privile
 <file>
 <source>loncom/init.d/loncontrol</source>
 <target dist='default'>etc/rc.d/init.d/loncontrol</target>
+<target dist='suse9.2 suse9.3 sles9'>etc/init.d/loncontrol</target>
 <categoryname>root script</categoryname>
 <description>
 Controls the launching/halting of lonc, lond, and lonsql processes.
@@ -5967,6 +6168,15 @@ Appleshares access (Macintosh)
 </description>
 </file>
 <file>
+  <source>loncom/interface/lonnotify.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonnotify.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface for Domain Coordinators to (a) send broadcast e-mail to groups 
+of users, and (b) to display e-mail of this type sent in the past.
+  </description>
+</file>
+<file>
   <source>loncom/interface/lonhelpmenu.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonhelpmenu.pm</target>
   <categoryname>handler</categoryname>
@@ -6047,6 +6257,22 @@ Appleshares access (Macintosh)
     Local handler for automated enrollment, standard version.
   </description>
 </file>
+<file>
+  <source>loncom/automation/batchcreatecourse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/batchcreatecourse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for batch creation of courses.
+  </description>
+</file>
+<file>
+  <source>loncom/automation/Autocreate.pl</source>Autocreate.pl
+  <target dist='default'>home/httpd/perl/Autocreate.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Script for automated course creation.
+  </description>
+</file>
 <fileglob>
     <glob>*</glob>
     <sourcedir>loncom/debugging_tools/</sourcedir>
@@ -6071,5 +6297,15 @@ unescape.pl;
 user_login_count.pl;
 </filenames>
 </fileglob>
+<file>
+<source>loncom/build/distprobe</source>
+<target dist='default'>home/httpd/perl/distprobe</target>
+<categoryname>script</categoryname>
+<description>
+for probing operating system flavor and version
+</description>
+<note>
+</note>
+</file>
 </files>
 </lpml>