--- doc/loncapafiles/loncapafiles.lpml	2008/09/23 10:32:32	1.612
+++ doc/loncapafiles/loncapafiles.lpml	2009/08/14 00:56:12	1.645.2.4
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.612 2008/09/23 10:32:32 droeschl Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.645.2.4 2009/08/14 00:56:12 raeburn Exp $ -->
 
 <!--
 
@@ -247,56 +247,56 @@ echo '**********************************
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
-  <targetdir dist='debian'>etc/init.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
-  <targetdir dist='debian'>etc/rc0.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
-  <targetdir dist='debian'>etc/rc1.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
-  <targetdir dist='debian'>etc/rc2.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
-  <targetdir dist='debian'>etc/rc3.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
-  <targetdir dist='debian'>etc/rc4.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
-  <targetdir dist='debian'>etc/rc5.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
-  <targetdir dist='debian'>etc/rc6.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
@@ -777,6 +777,7 @@ are viewable over the world-wide web</de
   <targetdir dist='default'>usr/lib/perl5/site_perl/5.005</targetdir>
   <targetdir dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0</targetdir>
   <targetdir dist='redhat8 redhat9'>usr/lib/perl5/site_perl/5.8.0</targetdir>
+  <targetdir dist='debian5'>usr/local/lib/perl/5.10.0</targetdir>
   <targetdir dist='debian'>usr/local/lib/perl/5.6.0</targetdir>
   <categoryname>standard</categoryname>
   <description>system perl tree (usually present on linux systems)
@@ -859,7 +860,7 @@ each list element consists of only two s
 <file>
 <source>loncom/loncapa.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa.conf</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/loncapa.conf</target>
+<target dist='sles10 suse10.1 suse10.2 suse10.3 suse11.1 debian5 ubuntu6 ubuntu8'>etc/apache2/loncapa.conf</target>
 <categoryname>conf</categoryname>
 <description>
 <p>
@@ -902,7 +903,7 @@ MySQL database</td></tr>
 <file>
 <source>loncom/loncapa_apache.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa_apache.conf</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/loncapa_apache.conf</target>
+<target dist='sles10 suse10.1 suse10.2 suse10.3 suse11.1 debian5 ubuntu6 ubuntu8'>etc/apache2/loncapa_apache.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 The goal of this file is to implement all LON-CAPA specific
@@ -922,7 +923,7 @@ the www@localhost MySQL password, and br
 <file>
 <source>loncom/startup.pl</source>
 <target dist='default'>etc/httpd/conf/startup.pl</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/startup.pl</target>
+<target dist='sles10 suse10.1 suse10.2 suse10.3 suse11.1 debian5 ubuntu6 ubuntu8'>etc/apache2/startup.pl</target>
 <categoryname>static conf</categoryname>
 <description>
 This file provides initializations for perl handlers.  It adjusts what
@@ -931,6 +932,16 @@ well as causing the Apache module to be
 <tt>startup.pl</tt> is invoked by <tt>loncapa_apache.conf</tt>.
 </description>
 </file>
+<link>
+<linkto>etc/apache2</linkto>
+<target dist='debian5 ubuntu6 ubuntu8'>
+etc/apache2/conf
+</target>
+<categoryname>symbolic link</categoryname>
+<description>
+symbolic link to directory /etc/apache2 from /etc/apache2/conf
+</description>
+</link>
 <file>
 <source>loncom/thesaurus/thesaurus.db</source>
 <target dist='default'>home/httpd/lonTabs/thesaurus.db</target>
@@ -1053,6 +1064,14 @@ utility cgi script to view status of per
   </description>
 </file>
 <file>
+  <source>loncom/cgi/lonauthcgi.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonauthcgi.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides routines used in authorization of server status CGI scripts 
+  </description>
+</file>
+<file>
 <source>loncom/cgi/graph.png</source>
 <target dist='default'>home/httpd/cgi-bin/graph.png</target>
 <categoryname>script</categoryname>
@@ -1235,6 +1254,8 @@ optional_criteria.task;
 optional_criteria.task.meta;
 ClickImageExample.problem;
 ClickImageExample.problem.meta;
+custompartial.problem;
+custompartial.problem.meta;
 CustomResponse.problem;
 CustomResponse.problem.meta;
 Essay.problem;
@@ -1254,6 +1275,8 @@ Plot_curve.problem;
 Plot_curve.problem.meta;
 Plot_data.problem;
 Plot_data.problem.meta;
+Rnumerical.problem;
+Rnumerical.problem.meta;
 RadioResponse.problem;
 RadioResponse.problem.meta;
 RandomLabelExample.problem;
@@ -1283,14 +1306,20 @@ SimpleMatching.problem;
 SimpleMatching.problem.meta;
 SimpleMathResponse.problem;
 SimpleMathResponse.problem.meta;
+SimpleMathResponseR.problem;
+SimpleMathResponseR.problem.meta;
 SimpleRank.problem;
 SimpleRank.problem.meta;
 SimpleTrueFalse.problem;
 SimpleTrueFalse.problem.meta;
 organic.problem;
 organic.problem.meta;
+organic_hint.problem;
+organic_hint.problem.meta;
 reaction.problem;
-reaction.problem.meta
+reaction.problem.meta;
+rection_hint.problem;
+reaction_hint.problem.meta
 </filenames>
 </fileglob>
 
@@ -1519,14 +1548,6 @@ propagate the ids in ids.db to all cours
   </description>
 </file>
 <file>
-<source>loncom/lonhttpd</source>
-<target dist='default'>home/httpd/perl/lonhttpd</target>
-<categoryname>script</categoryname>
-<description>
-Small fry httpd on port 8080
-</description>
-</file>
-<file>
 <source>loncom/lonmemcached</source>
 <target dist='default'>home/httpd/perl/lonmemcached</target>
 <categoryname>script</categoryname>
@@ -1543,6 +1564,14 @@ small script to handle the start up of t
   </description>
 </file>
 <file>
+  <source>loncom/lonr</source>
+  <target dist='default'>home/httpd/perl/lonr</target>
+  <categoryname>script</categoryname>
+  <description>
+    manages the existance and talking to the R processes
+  </description>
+</file>
+<file>
     <source>loncom/request_ssl_key.sh</source>
     <target dist='default'>home/httpd/lonCerts/request_ssl_key.sh</target>
     <categoryname>script</categoryname>
@@ -1695,6 +1724,16 @@ user passwords.
 <status>being updated</status>
 </file>
 <file>
+<source>loncom/lcinstallfile</source>
+<target dist='default'>home/httpd/perl/lcinstallfile</target>
+<categoryname>setuid script</categoryname>
+<description>
+Set uid file that allows lond to install files in 
+lonTab which is normally owned by root.
+</description>
+<status>under construction</status>
+</file>
+<file>
 <source>loncom/pwchange</source>
 <target dist='default'>home/httpd/perl/pwchange</target>
 <categoryname>setuid script</categoryname>
@@ -1725,6 +1764,16 @@ set according to the user's authenticati
 <status>New file</status>
 </file>
 <file>
+<source>loncom/lciptables</source>
+<target dist='default'>home/httpd/perl/lciptables</target>
+<categoryname>setuid script</categoryname>
+<description>
+Calls iptables to update firewall settings for port used for internal
+LON-CAPA communication to receive traffic from other servers in cluster
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/lcuserdel</source>
 <target dist='default'>home/httpd/perl/lcuserdel</target>
 <categoryname>setuid script</categoryname>
@@ -3517,6 +3566,7 @@ fa.pm;
 ar.pm;
 es.pm;
 x_chef.pm;
+zh.pm;
 </filenames>
 </fileglob>
 <file>
@@ -3682,6 +3732,7 @@ MathML.html;
 Maxima.html;
 MaximaPopup.html;
 EditMathPopup.html;
+FCKEditMathPopup.html
   </filenames>
 </fileglob>
 <fileglob>
@@ -3815,7 +3866,7 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
 </file>
 
 <file>
-  <source>loncom/html/adm/fckeditor/FCKeditor_2.4.3.tar.gz</source>
+  <source>loncom/html/adm/fckeditor/FCKeditor_2.6.3.tar.gz</source>
   <target dist='default'>home/httpd/html/adm/fckeditor</target>
   <categoryname>script</categoryname>
   <description>
@@ -3827,7 +3878,7 @@ commands /home/httpd/html/
   </installscript>
   <dependencies>
 loncom/html/adm/fckeditor/commands;
-loncom/html/adm/fckeditor/FCKeditor_2.4.3.tar.gz;
+loncom/html/adm/fckeditor/FCKeditor_2.6.3.tar.gz;
 loncom/html/adm/fckeditor/loncapaconfig.js;
   </dependencies>
 </file>
@@ -4233,6 +4284,14 @@ The handler displays messages, has routi
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/courseprefs.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/courseprefs.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface for displaying/modifying course configuration
+  </description>
+</file>
+<file>
 <source>loncom/homework/hint.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/hint.pm</target>
 <categoryname>handler</categoryname>
@@ -4638,6 +4697,15 @@ Tags Default Definition Module
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/lontable.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lontable.pm</target>
+<categoryname>server standard</categoryname>
+<description>
+Table object
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/run.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/run.pm</target>
 <categoryname>handler</categoryname>
@@ -4780,6 +4848,15 @@ handles request to the CAPA homework pro
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/lonr.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonr.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    routines to simplify talking to the R client
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/Safe.pm</source>
 <target dist='default'>home/httpd/lib/perl/Safe.pm</target>
 <categoryname>handler</categoryname>
@@ -4983,6 +5060,18 @@ loncom/build/pod2html.sh ../auth/loncacc
 </dependencies>
 </file>
 <file>
+<source>loncom/auth/lonstatusacc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstatusacc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+This module provides access to server status - Apache's server-status and
+files in the /home/httpd/html/lon-status directory, for which it is invoked 
+by the URL-related pattern syntax:
+<tt>LocationMatch "^/+lon-status/.*"</tt>.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/lonauth.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonauth.pm</target>
 <categoryname>handler</categoryname>
@@ -5256,7 +5345,7 @@ Domain information serving.
 <file>
 <source>loncom/mime.types</source>
 <target dist='default'>etc/httpd/conf/mime.types</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/mime.types</target>
+<target dist='sles10 suse10.1 suse10.2 suse10.3 suse11.1 debian5 ubuntu6 ubuntu8'>etc/apache2/mime.types</target>
 <categoryname>www static conf</categoryname>
 <description>Expanded mime.types</description>
 </file>
@@ -5356,6 +5445,14 @@ A blank page with very minimal HTML stru
 A blank page which calls drawwindow in its opener after being loaded.
 </description>
 </file>
+<file>
+<source>loncom/includepsheader.ps</source>
+<target dist='default'>home/httpd/lib/includepsheader.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+Extra header for dvips
+</description>
+</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>rat/images/</sourcedir>
@@ -5505,11 +5602,11 @@ logos and general widget icons
 <filenames>
 SMETE_white.gif;
 aboutlon.gif;
-aboutlon_pt.gif;
 aboutlon_de.gif;
+aboutlon_pt.gif;
 accessbutton.gif;
-accessbutton_pt.gif;
 accessbutton_de.gif;
+accessbutton_pt.gif;
 angry.gif;
 arrow_up.gif;
 baeh.gif;
@@ -5558,6 +5655,7 @@ html_big.gif;
 huh.gif;
 jar.gif;
 jar_big.gif;
+jpeg.gif;
 jpg.gif;
 jpg_big.gif;
 latex.gif;
@@ -5649,6 +5747,7 @@ userauthentication_de.gif;
 wav.gif;
 wav_big.gif;
 white_space_20_22.gif;
+whitespace_21.gif;
 whitespace1.gif;
 whitespace10.gif;
 whitespace2.gif;
@@ -5816,6 +5915,16 @@ entries.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/configuration/Firewall.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/Firewall.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Provides methods to open and close firewall ports used 
+for socket-based communication between LON-CAPA servers
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/ConfigFileEdit.pm</source>
 <target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
 <categoryname>system file</categoryname>
@@ -5845,8 +5954,8 @@ modules/TexConvert/tthperl/commands
 commands;
 compiles/tth.so.i386;
 compiles/tth.so.x86_64;
-compiles/tth.so.i386.fedora9;
-compiles/tth.so.x86_64.fedora9;
+compiles/tth.so.i386.perl.5.10;
+compiles/tth.so.x86_64.perl.5.10;
 </dependencies>
 </file>
 <file>
@@ -5941,6 +6050,7 @@ mimetex.html;
 README;
 texfonts.h;
 LICENSE;
+VERSION;
 </dependencies>
 </file>
 <fileglob>
@@ -6378,16 +6488,19 @@ pref.gif;
 prt.gif;
 pub.gif;
 qempty.gif;
+rcrs.gif;
 reload.gif;
 remotebg.gif;
 res.gif;
 roles.gif;
+rsrv.gif;
 rtrv.gif;
 sbkm.gif;
 sctr.gif;
 spacer.gif;
 sprs.gif;
 src.gif;
+srvr.gif;
 stat.gif;
 subm.gif;
 title.gif;
@@ -6433,8 +6546,11 @@ mcrs.png;
 parm.png;
 port.png;
 prt.png;
+rcrs.png;
+rsrv.png;
 sbkm.png;
 src.png;
+srvr.png;
 subm.png;
 back.png;
 catalog.png;
@@ -6451,6 +6567,16 @@ res.png;
 rtrv.png;
 sctr.png;
 stat.png;
+pdfupload.png;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.png</glob>
+<sourcedir>loncom/html/res/adm/pages/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>graphical icons used in submenus</description>
+<filenames>
 </filenames>
 </fileglob>
 <file>
@@ -6767,7 +6893,7 @@ file that allows setuid password privile
 <file>
 <source>loncom/init.d/loncontrol</source>
 <target dist='default'>etc/rc.d/init.d/loncontrol</target>
-<target dist='suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3'>etc/init.d/loncontrol</target>
+<target dist='suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1 debian5 ubuntu6 ubuntu8'>etc/init.d/loncontrol</target>
 <categoryname>root script</categoryname>
 <description>
 Controls the launching/halting of lonc, lond, and lonsql processes.
@@ -6775,7 +6901,7 @@ Controls the launching/halting of lonc,
 </file>
 <link>
 <linkto dist='default'>etc/rc.d/init.d/loncontrol</linkto>
-<linkto dist='suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3'>etc/init.d/loncontrol</linkto>
+<linkto dist='suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1 debian5 ubuntu6 ubuntu8'>etc/init.d/loncontrol</linkto>
 <target dist='default'>
 etc/rc.d/rc0.d/K05loncontrol;
 etc/rc.d/rc1.d/K05loncontrol;
@@ -6785,19 +6911,19 @@ etc/rc.d/rc4.d/S95loncontrol;
 etc/rc.d/rc5.d/S95loncontrol;
 etc/rc.d/rc6.d/K05loncontrol
 </target>
-<target dist='suse10.2 suse10.3'></target>
 <categoryname>symbolic link</categoryname>
 <description>
-symbolic links to /etc/rc.d/init.d/loncontrol for run-levels</description>
+symbolic links to /etc/rc.d/init.d/loncontrol (redhat/fedora) or /etc/init.d/loncontrol (suse/debian) for run-levels
+</description>
 </link>
 
-<file dist="suse10.2 suse10.3">
+<file dist="suse10.2 suse10.3 suse11.1">
   <source>loncom/init.d/loncontrol</source>
   <target>etc/rc.d/</target>
   <description>
     setup loncontrol to run at boot
   </description>
-  <installscript dist="suse10.2 suse10.3">
+  <installscript dist="suse10.2 suse10.3 suse11.1">
 -c 'chkconfig --del loncontrol;chkconfig loncontrol 345;chkconfig --list loncontrol'
   </installscript>
   <dependencies>
@@ -6925,6 +7051,31 @@ of users, and (b) to display e-mail of t
   </description>
 </file>
 <file>
+  <source>loncom/interface/domainstatus.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/domainstatus.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for generation of a menu of links to server status utilities
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonconfigsettings.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonconfigsettings.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Common routines for generating menus to set default configuration settings -  
+   for a domain or for a course.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonpdfupload.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpdfupload.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Interface to upload a PDF form containing responses to problems entered offline using a PDF reader for storage as submissions.
+  </description>
+</file>
+<file>
   <source>loncom/interface/lonpopulate.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonpopulate.pm</target>
   <categoryname>handler</categoryname>
@@ -7025,6 +7176,7 @@ modify_config_files.pl;
 parse_scantron.pl;
 seed_accesscount.pl;
 stress.pl;
+testkerberos.pl;
 unescape.pl;
 user_login_count.pl;
 </filenames>