--- doc/loncapafiles/loncapafiles.lpml	2009/09/17 02:56:10	1.614.4.2
+++ doc/loncapafiles/loncapafiles.lpml	2009/04/18 23:43:43	1.641
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.614.4.2 2009/09/17 02:56:10 raeburn Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.641 2009/04/18 23:43:43 www Exp $ -->
 
 <!--
 
@@ -1057,7 +1057,7 @@ utility cgi script to view status of per
   <target dist='default'>home/httpd/lib/perl/LONCAPA/lonauthcgi.pm</target>
   <categoryname>system file</categoryname>
   <description>
-      Provides routines used in authorization of server status CGI scripts
+      Provides routines used in authorization of server status CGI scripts 
   </description>
 </file>
 <file>
@@ -1262,6 +1262,8 @@ Plot_curve.problem;
 Plot_curve.problem.meta;
 Plot_data.problem;
 Plot_data.problem.meta;
+Rnumerical.problem;
+Rnumerical.problem.meta;
 RadioResponse.problem;
 RadioResponse.problem.meta;
 RandomLabelExample.problem;
@@ -1291,6 +1293,8 @@ SimpleMatching.problem;
 SimpleMatching.problem.meta;
 SimpleMathResponse.problem;
 SimpleMathResponse.problem.meta;
+SimpleMathResponseR.problem;
+SimpleMathResponseR.problem.meta;
 SimpleRank.problem;
 SimpleRank.problem.meta;
 SimpleTrueFalse.problem;
@@ -1695,6 +1699,16 @@ user passwords.
 <status>being updated</status>
 </file>
 <file>
+<source>loncom/lcinstallfile</source>
+<target dist='default'>home/httpd/perl/lcinstallfile</target>
+<categoryname>setuid script</categoryname>
+<description>
+Set uid file that allows lond to install files in 
+lonTab which is normally owned by root.
+</description>
+<status>under construction</status>
+</file>
+<file>
 <source>loncom/pwchange</source>
 <target dist='default'>home/httpd/perl/pwchange</target>
 <categoryname>setuid script</categoryname>
@@ -1924,7 +1938,7 @@ Edit handler for rat maps; TeX content h
 <status>works/unverified</status>
 </file>
 <file>
-<source>modules/gci/londocs.pm</source>
+<source>loncom/interface/londocs.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londocs.pm</target>
 <categoryname>handler</categoryname>
 <description>
@@ -2327,6 +2341,15 @@ The PDF Domain Manual
     Examples for using &EXT problem metadata
   </description>
 </file>
+<file>
+  <source>loncom/interface/lontemplate.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lontemplate.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler to create templates
+  </description>
+  <status>works/unverified</status>
+</file>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/html/adm/help/gif/</sourcedir>
@@ -3517,17 +3540,10 @@ fa.pm;
 ar.pm;
 es.pm;
 x_chef.pm;
+zh.pm;
 </filenames>
 </fileglob>
 <file>
-<source>modules/gci/gci.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/localize/gci.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Customized phrases for GCI branch of LON-CAPA  
-</description>
-</file>
-<file>
 <source>loncom/interface/loncoursedata.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncoursedata.pm</target>
 <categoryname>handler</categoryname>
@@ -4647,6 +4663,15 @@ Tags Default Definition Module
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/lontable.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lontable.pm</target>
+<categoryname>server standard</categoryname>
+<description>
+Table object
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/run.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/run.pm</target>
 <categoryname>handler</categoryname>
@@ -4789,6 +4814,15 @@ handles request to the CAPA homework pro
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/lonr.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonr.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    routines to simplify talking to the R client
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/Safe.pm</source>
 <target dist='default'>home/httpd/lib/perl/Safe.pm</target>
 <categoryname>handler</categoryname>
@@ -5011,7 +5045,7 @@ by the URL-related pattern syntax:
 <status>works/unverified</status>
 </file>
 <file>
-<source>modules/gci/lonlogin.pm</source>
+<source>loncom/auth/lonlogin.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonlogin.pm</target>
 <categoryname>handler</categoryname>
 <description>login screen</description>
@@ -5257,13 +5291,13 @@ Domain information serving.
 <status>works/unverified</status>
 </file>
 <file>
-<source>modules/gci/index.html</source>
+<source>loncom/html/index.html</source>
 <target dist='default'>home/httpd/html/index.html</target>
 <categoryname>interface file</categoryname>
 <description>bumps to login</description>
 </file>
 <file>
-<source>modules/gci/index.html</source>
+<source>loncom/html/index.html</source>
 <target dist='default'>home/httpd/html/origindex.html</target>
 <categoryname>interface file</categoryname>
 <description>bumps to login, backup for takeonline</description>
@@ -5377,6 +5411,14 @@ A blank page with very minimal HTML stru
 A blank page which calls drawwindow in its opener after being loaded.
 </description>
 </file>
+<file>
+<source>loncom/includepsheader.ps</source>
+<target dist='default'>home/httpd/lib/includepsheader.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+Extra header for dvips
+</description>
+</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>rat/images/</sourcedir>
@@ -5526,13 +5568,18 @@ logos and general widget icons
 <filenames>
 SMETE_white.gif;
 aboutlon.gif;
-aboutlon_pt.gif;
 aboutlon_de.gif;
+aboutlon_pt.gif;
 accessbutton.gif;
-accessbutton_pt.gif;
 accessbutton_de.gif;
+accessbutton_pt.gif;
 angry.gif;
+arrow.closed.gif;
+arrow.open.gif;
+arrow.up.gif;
 arrow_up.gif;
+arrow_white.png;
+avi.gif;
 baeh.gif;
 bigsmile.gif;
 branch.gif;
@@ -5579,10 +5626,12 @@ html_big.gif;
 huh.gif;
 jar.gif;
 jar_big.gif;
+jpeg.gif;
 jpg.gif;
 jpg_big.gif;
 latex.gif;
 library.gif;
+lightGreyBG.png;
 lipsrsealed.gif;
 lite.gif;
 liteani.gif;
@@ -5595,6 +5644,7 @@ lonhelplogos.gif;
 lonhelptop.gif;
 lonlogo.gif;
 lonlogos.gif;
+lonUtilityIcon.png;
 lowerleft.gif;
 lowerright.gif;
 mailbkgrd.gif;
@@ -5606,6 +5656,8 @@ mov.gif;
 mov_big.gif;
 move_up.gif;
 move_down.gif;
+mpeg.gif;
+mpg.gif;
 navmap.correct.gif;
 navmap.partial.gif;
 navmap.ellipsis.gif;
@@ -5633,6 +5685,9 @@ problem_big.gif;
 ps.gif;
 ps_big.gif;
 rolleyes.gif;
+qt.gif;
+qti.gif;
+qtm.gif;
 quill.gif;
 quiz.gif;
 quiz_big.gif;
@@ -5643,6 +5698,7 @@ server.gif;
 server_big.gif;
 shocked.gif;
 smiley.gif;
+spreadsheet.gif;
 srvbad.gif;
 srvempty.gif;
 srvgood.gif;
@@ -5656,6 +5712,7 @@ task_big.gif;
 tex.gif;
 tex_big.gif;
 tth.gif;
+text.gif;
 txt.gif;
 txt_big.gif;
 unknown.gif;
@@ -5670,6 +5727,7 @@ userauthentication_de.gif;
 wav.gif;
 wav_big.gif;
 white_space_20_22.gif;
+whitespace_21.gif;
 whitespace1.gif;
 whitespace10.gif;
 whitespace2.gif;
@@ -5681,6 +5739,7 @@ whitespace7.gif;
 whitespace8.gif;
 whitespace9.gif;
 wink.gif;
+wmv.gif;
 xls.gif;
 xls_big.gif;
 xml.gif;
@@ -5717,72 +5776,6 @@ subm_button.gif;
 subm_button.png;
 </filenames>
 </fileglob>
-<fileglob>
-<glob>*.*</glob>
-<sourcedir>modules/gci/images/</sourcedir>
-<targetdir dist='default'>home/httpd/html/images/</targetdir>
-<categoryname>graphic file</categoryname>
-<description>
-Images for GCI portal pages
-</description>
-<filenames>
-devcycle.jpg;
-devcyclesmall.jpg;
-earth.gif;
-question.jpg;
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.*</glob>
-<sourcedir>modules/gci/images/login/</sourcedir>
-<targetdir dist='default'>home/httpd/html/images/login/</targetdir>
-<categoryname>graphic file</categoryname>
-<description>
-Images for custom log-in page for GCI
-</description>
-<filenames>
-gcilogo_smrnd.png;
-lclogin_r1_c1.gif;
-lclogin_r1_c7.gif;
-lclogin_r2_c4.png;
-lclogin_r2_c6.png;
-lclogin_r8_c4.png;
-lclogin_r8_c6.png;
-lclogin_r9_c1.gif;
-lclogin_r9_c7.gif;
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.*</glob>
-<sourcedir>modules/gci/portal/</sourcedir>
-<targetdir dist='default'>home/httpd/html/portal/<targetdir>
-<categoryname>interface file</categoryname>
-<description>
-Web pages for GCI portal
-</description>
-<filenames>
-identifyalternative.html;
-identifytarget.html;
-peerreview.html;
-pilotquestions.html;
-quantitative.html;
-thinkaloud.html;
-userfeedback.html;
-writequestion.html;
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.*</glob>
-<sourcedir>modules/gci/css/</sourcedir>
-<targetdir dist='default'>home/httpd/html/css/<targetdir>
-<categoryname>interface file</categoryname>
-<description>
-CSS for GCI pages 
-</description>
-<filenames>
-login.css;
-</filenames>
-</fileglob>
 <file>
 <source>loncom/xml/algebra/AlgParser.pm</source>
 <target dist='default'>home/httpd/lib/perl/AlgParser.pm</target>
@@ -6421,6 +6414,8 @@ ccat.gif;
 ccrs.gif;
 chat.gif;
 chrt.gif;
+close-all-folders.gif;
+close-navigation.gif;
 clst.gif;
 com.gif;
 conf.gif;
@@ -6451,12 +6446,15 @@ ledsend.gif;
 list.gif;
 logout.gif;
 mail.gif;
+mark-discussionentries-read.gif;
 mcrs.gif;
 mrk.gif;
 nav.gif;
 new.gif;
 next.gif;
 nothumb.gif;
+open-all-folders.gif;
+open-first-problem.gif;
 parm.gif;
 pcstr.gif;
 pgrd.gif;
@@ -6466,17 +6464,22 @@ pref.gif;
 prt.gif;
 pub.gif;
 qempty.gif;
+rcrs.gif;
 reload.gif;
 remotebg.gif;
 res.gif;
 roles.gif;
+rsrv.gif;
 rtrv.gif;
 sbkm.gif;
 sctr.gif;
+show-all.gif;
+show-incomplete-problems.gif;
 spacer.gif;
 sprs.gif;
 src.gif;
 srvr.gif;
+start-navigation.gif;
 stat.gif;
 subm.gif;
 title.gif;
@@ -6522,6 +6525,8 @@ mcrs.png;
 parm.png;
 port.png;
 prt.png;
+rcrs.png;
+rsrv.png;
 sbkm.png;
 src.png;
 srvr.png;
@@ -6543,6 +6548,52 @@ sctr.png;
 stat.png;
 </filenames>
 </fileglob>
+<fileglob>
+<glob>*.png</glob>
+<sourcedir>loncom/html/res/adm/pages/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>graphical icons used in submenus</description>
+<filenames>
+addClickerInfoFile.png;
+comblock.png;
+contact-new.png;
+coprplot.png;
+dialog-information.png;
+document-open.png;
+document-properties.png;
+edit-copy.png;
+edit-find.png;
+edit-find-replace.png;
+edit-redo.png;
+edit-select-all.png;
+edit-undo.png;
+emblem-photos.png;
+emblem-readonly.png;
+emblem-system.png;
+folder-new.png;
+format-justify-fill.png;
+fromfile.png;
+list-add.png;
+mail-message-new.png;
+mail-reply-all.png;
+mail-reply-sender.png;
+messalog.png;
+network-wireless.png;
+network-workgroup.png;
+uploadscores.png;
+preferences-desktop-font.png;
+preferences-desktop-locale.png;
+preferences-desktop-remote-desktop.png;
+preferences-desktop-theme.png;
+preferences-desktop-wallpaper.png;
+preferences-system-windows.png;
+start-here.png;
+subtimpl.png;
+system-lock-screen.png;
+system-users.png;
+</filenames>
+</fileglob>
 <file>
 <source>loncom/html/res/adm/pages/math_example.tex</source>
 <target dist='default'>home/httpd/html/res/adm/pages/math_example.tex</target>
@@ -7014,7 +7065,7 @@ of users, and (b) to display e-mail of t
     Interface for modifying domain configuration
   </description>
 </file>
- <file>
+<file>
   <source>loncom/interface/domainstatus.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/domainstatus.pm</target>
   <categoryname>handler</categoryname>
@@ -7023,6 +7074,23 @@ of users, and (b) to display e-mail of t
   </description>
 </file>
 <file>
+  <source>loncom/interface/lonconfigsettings.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonconfigsettings.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Common routines for generating menus to set default configuration settings -  
+   for a domain or for a course.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonpdfupload.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpdfupload.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Interface to upload a PDF form containing responses to problems entered offline using a PDF reader for storage as submissions.
+  </description>
+</file>
+<file>
   <source>loncom/interface/lonpopulate.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonpopulate.pm</target>
   <categoryname>handler</categoryname>