--- doc/loncapafiles/loncapafiles.lpml	2008/08/08 14:52:13	1.604
+++ doc/loncapafiles/loncapafiles.lpml	2010/03/15 00:14:05	1.678
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.604 2008/08/08 14:52:13 bisitz Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.678 2010/03/15 00:14:05 raeburn Exp $ -->
 
 <!--
 
@@ -247,56 +247,56 @@ echo '**********************************
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
-  <targetdir dist='debian'>etc/init.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
-  <targetdir dist='debian'>etc/rc0.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
-  <targetdir dist='debian'>etc/rc1.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
-  <targetdir dist='debian'>etc/rc2.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
-  <targetdir dist='debian'>etc/rc3.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
-  <targetdir dist='debian'>etc/rc4.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
-  <targetdir dist='debian'>etc/rc5.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
-  <targetdir dist='debian'>etc/rc6.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
@@ -535,6 +535,54 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/ckeditor</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Rich Text Editor</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/js</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- js files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- css files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/ui-lightness</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- css files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/ui-lightness/images</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- css images</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- css files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/images</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- css images</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/dragmath/applet</targetdir>
   <categoryname>server readonly</categoryname>
   <description>Formula editor applet directory and popups</description>
@@ -729,12 +777,6 @@ are viewable over the world-wide web</de
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/lonLCDfont</targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>LCD font for remote control</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonDomLogos</targetdir>
   <categoryname>server readonly</categoryname>
   <description>Logos for LON-CAPA domains</description>
@@ -777,6 +819,7 @@ are viewable over the world-wide web</de
   <targetdir dist='default'>usr/lib/perl5/site_perl/5.005</targetdir>
   <targetdir dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0</targetdir>
   <targetdir dist='redhat8 redhat9'>usr/lib/perl5/site_perl/5.8.0</targetdir>
+  <targetdir dist='debian5'>usr/local/lib/perl/5.10.0</targetdir>
   <targetdir dist='debian'>usr/local/lib/perl/5.6.0</targetdir>
   <categoryname>standard</categoryname>
   <description>system perl tree (usually present on linux systems)
@@ -859,7 +902,7 @@ each list element consists of only two s
 <file>
 <source>loncom/loncapa.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa.conf</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/loncapa.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 debian5 ubuntu6 ubuntu8'>etc/apache2/loncapa.conf</target>
 <categoryname>conf</categoryname>
 <description>
 <p>
@@ -902,7 +945,7 @@ MySQL database</td></tr>
 <file>
 <source>loncom/loncapa_apache.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa_apache.conf</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/loncapa_apache.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 debian5 ubuntu6 ubuntu8'>etc/apache2/loncapa_apache.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 The goal of this file is to implement all LON-CAPA specific
@@ -922,7 +965,7 @@ the www@localhost MySQL password, and br
 <file>
 <source>loncom/startup.pl</source>
 <target dist='default'>etc/httpd/conf/startup.pl</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/startup.pl</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 debian5 ubuntu6 ubuntu8'>etc/apache2/startup.pl</target>
 <categoryname>static conf</categoryname>
 <description>
 This file provides initializations for perl handlers.  It adjusts what
@@ -931,6 +974,16 @@ well as causing the Apache module to be
 <tt>startup.pl</tt> is invoked by <tt>loncapa_apache.conf</tt>.
 </description>
 </file>
+<link>
+<linkto>etc/apache2</linkto>
+<target dist='debian5 ubuntu6 ubuntu8'>
+etc/apache2/conf
+</target>
+<categoryname>symbolic link</categoryname>
+<description>
+symbolic link to directory /etc/apache2 from /etc/apache2/conf
+</description>
+</link>
 <file>
 <source>loncom/thesaurus/thesaurus.db</source>
 <target dist='default'>home/httpd/lonTabs/thesaurus.db</target>
@@ -1053,6 +1106,14 @@ utility cgi script to view status of per
   </description>
 </file>
 <file>
+  <source>loncom/cgi/lonauthcgi.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonauthcgi.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides routines used in authorization of server status CGI scripts 
+  </description>
+</file>
+<file>
 <source>loncom/cgi/graph.png</source>
 <target dist='default'>home/httpd/cgi-bin/graph.png</target>
 <categoryname>script</categoryname>
@@ -1235,6 +1296,8 @@ optional_criteria.task;
 optional_criteria.task.meta;
 ClickImageExample.problem;
 ClickImageExample.problem.meta;
+custompartial.problem;
+custompartial.problem.meta;
 CustomResponse.problem;
 CustomResponse.problem.meta;
 Essay.problem;
@@ -1254,6 +1317,8 @@ Plot_curve.problem;
 Plot_curve.problem.meta;
 Plot_data.problem;
 Plot_data.problem.meta;
+Rnumerical.problem;
+Rnumerical.problem.meta;
 RadioResponse.problem;
 RadioResponse.problem.meta;
 RandomLabelExample.problem;
@@ -1283,14 +1348,20 @@ SimpleMatching.problem;
 SimpleMatching.problem.meta;
 SimpleMathResponse.problem;
 SimpleMathResponse.problem.meta;
+SimpleMathResponseR.problem;
+SimpleMathResponseR.problem.meta;
 SimpleRank.problem;
 SimpleRank.problem.meta;
 SimpleTrueFalse.problem;
 SimpleTrueFalse.problem.meta;
 organic.problem;
 organic.problem.meta;
+organic_hint.problem;
+organic_hint.problem.meta;
 reaction.problem;
-reaction.problem.meta
+reaction.problem.meta;
+reaction_hint.problem;
+reaction_hint.problem.meta
 </filenames>
 </fileglob>
 
@@ -1493,6 +1564,15 @@ Batch script for removing files not acce
 </description>
 </file>
 <file>
+<source>loncom/misc/refresh_courseids_db.pl</source>
+<target dist='default'>home/httpd/perl/refresh_courseids_db.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for refreshing course information in aggregating GDBM 
+file: nohist_courseids.db found in /home/httpd/lonUsers on library servers.
+</description>
+</file>
+<file>
 <source>loncom/debugging_tools/seed_accesscount.pl</source>
 <target dist='default'>home/httpd/perl/seed_accesscount.pl</target>
 <categoryname>script</categoryname>
@@ -1519,14 +1599,6 @@ propagate the ids in ids.db to all cours
   </description>
 </file>
 <file>
-<source>loncom/lonhttpd</source>
-<target dist='default'>home/httpd/perl/lonhttpd</target>
-<categoryname>script</categoryname>
-<description>
-Small fry httpd on port 8080
-</description>
-</file>
-<file>
 <source>loncom/lonmemcached</source>
 <target dist='default'>home/httpd/perl/lonmemcached</target>
 <categoryname>script</categoryname>
@@ -1543,6 +1615,14 @@ small script to handle the start up of t
   </description>
 </file>
 <file>
+  <source>loncom/lonr</source>
+  <target dist='default'>home/httpd/perl/lonr</target>
+  <categoryname>script</categoryname>
+  <description>
+    manages the existance and talking to the R processes
+  </description>
+</file>
+<file>
     <source>loncom/request_ssl_key.sh</source>
     <target dist='default'>home/httpd/lonCerts/request_ssl_key.sh</target>
     <categoryname>script</categoryname>
@@ -1695,6 +1775,16 @@ user passwords.
 <status>being updated</status>
 </file>
 <file>
+<source>loncom/lcinstallfile</source>
+<target dist='default'>home/httpd/perl/lcinstallfile</target>
+<categoryname>setuid script</categoryname>
+<description>
+Set uid file that allows lond to install files in 
+lonTab which is normally owned by root.
+</description>
+<status>under construction</status>
+</file>
+<file>
 <source>loncom/pwchange</source>
 <target dist='default'>home/httpd/perl/pwchange</target>
 <categoryname>setuid script</categoryname>
@@ -1725,6 +1815,16 @@ set according to the user's authenticati
 <status>New file</status>
 </file>
 <file>
+<source>loncom/lciptables</source>
+<target dist='default'>home/httpd/perl/lciptables</target>
+<categoryname>setuid script</categoryname>
+<description>
+Calls iptables to update firewall settings for port used for internal
+LON-CAPA communication to receive traffic from other servers in cluster
+</description>
+<status>New file</status>
+</file>
+<file>
 <source>loncom/lcuserdel</source>
 <target dist='default'>home/httpd/perl/lcuserdel</target>
 <categoryname>setuid script</categoryname>
@@ -2041,6 +2141,15 @@ Handler for a DC to pick an author from
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonpickuser.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickuser.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a user from a directory search
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonbulletin.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonbulletin.pm</target>
 <categoryname>handler</categoryname>
@@ -2327,6 +2436,15 @@ The PDF Domain Manual
     Examples for using &EXT problem metadata
   </description>
 </file>
+<file>
+  <source>loncom/interface/lontemplate.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lontemplate.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler to create templates
+  </description>
+  <status>works/unverified</status>
+</file>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/html/adm/help/gif/</sourcedir>
@@ -2527,7 +2645,6 @@ Authoring_ImageResponse.tex;
 Authoring_Input_Tags.tex;
 Authoring_Internal_Tags.tex;
 Authoring_Intro.tex;
-Authoring_M_Tag.tex;
 Authoring_Math_Editor.tex;
 Authoring_NumericalResponse.tex;
 Authoring_OptionResponse.tex;
@@ -2621,6 +2738,23 @@ Course_Modify_Student_Data.tex;
 Course_Parameter_Levels.tex;
 Course_Parameter_Table_Mode.tex;
 Course_Problem_Weight.tex;
+Course_Request_Access_End.tex;
+Course_Request_Access_Start.tex;
+Course_Request_Autoadd.tex;
+Course_Request_Autodrop.tex;
+Course_Request_Category.tex;
+Course_Request_Clone.tex;
+Course_Request_Crosslist.tex;
+Course_Request_Description.tex;
+Course_Request_Enroll_End.tex;
+Course_Request_Enroll_Start.tex;
+Course_Request_LCSection.tex;
+Course_Request_Personnel.tex;
+Course_Request_RegAccess_End.tex;
+Course_Request_RegAccess_Start.tex;
+Course_Request_Rolesection.tex;
+Course_Request_Sections.tex;
+Course_Roles.tex;
 Course_Self_Enrollment.tex;
 Course_Set_Start_End_Date.tex;
 Course_Setting_Parameters.tex;
@@ -2751,6 +2885,11 @@ Math_Response_Problems.tex;
 Maxima_Argument_Array.tex;
 Maxima_Libraries.tex;
 Metadata_Description.tex;
+Modify_Community_Owner.tex;
+Modify_Course_Defaultauth.tex;
+Modify_Course_Instcode.tex;
+Modify_Course_Owner.tex;
+Modify_Course_Quota.tex;
 Navigation_Screen.tex;
 Navmap_Host_Down.tex;
 NavMaps_MarkPosts_Read.tex;
@@ -2903,6 +3042,7 @@ Tolerance.tex;
 Uploaded_Templates_PublicView.tex;
 Uploaded_Templates_TextBoxes.tex;
 Uploading_File_Options.tex;
+Using_Clickers.tex;
 Variable_Naming_Conventions.tex;
 Variables_in_Scripts.tex;
 Variables_in_the_Answer_Block.tex;
@@ -2927,6 +3067,7 @@ German Tex files for the help system
 <filenames>
 About_Bombs.tex;
 About_Communication.tex;
+Authoring_Math_Editor.tex;
 Contextual_Help.tex;
 Cascading_Parameters.tex;
 Course_Self_Enrollment.tex;
@@ -2943,6 +3084,7 @@ Docs_Score_Upload_Form.tex;
 Docs_Verify_Content.tex;
 Formula_Editor.tex;
 General_Intro.tex;
+Generation.tex;
 Metadata_Description.tex;
 Navigation_Screen.tex;
 Parameter_Overview.tex;
@@ -2951,6 +3093,7 @@ Publishing_Copyright.tex;
 Publishing_Keywords.tex;
 Quick_Grades_Possibly_Correct.tex;
 Ranking_Problems.tex;
+Receipt.tex;
 Search_Advanced.tex;
 Search_Basic.tex;
 Student_Intro.tex;
@@ -3428,6 +3571,24 @@ Internal routines for creating a clone o
   <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonrequestcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrequestcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows submission of course requests by users with the right to request them 
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/loncoursequeueadmin.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncoursequeueadmin.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Common routines for administration of queues containing user-submitted requests - either for self-enrollment in an existing course, or for creation of a new course.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/loncreateuser.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncreateuser.pm</target>
 <categoryname>handler</categoryname>
@@ -3515,6 +3676,7 @@ fa.pm;
 ar.pm;
 es.pm;
 x_chef.pm;
+zh.pm;
 </filenames>
 </fileglob>
 <file>
@@ -3680,6 +3842,7 @@ MathML.html;
 Maxima.html;
 MaximaPopup.html;
 EditMathPopup.html;
+FCKEditMathPopup.html
   </filenames>
 </fileglob>
 <fileglob>
@@ -3813,7 +3976,7 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
 </file>
 
 <file>
-  <source>loncom/html/adm/fckeditor/FCKeditor_2.4.3.tar.gz</source>
+  <source>loncom/html/adm/fckeditor/FCKeditor_2.6.5.tar.gz</source>
   <target dist='default'>home/httpd/html/adm/fckeditor</target>
   <categoryname>script</categoryname>
   <description>
@@ -3825,11 +3988,29 @@ commands /home/httpd/html/
   </installscript>
   <dependencies>
 loncom/html/adm/fckeditor/commands;
-loncom/html/adm/fckeditor/FCKeditor_2.4.3.tar.gz;
+loncom/html/adm/fckeditor/FCKeditor_2.6.5.tar.gz;
 loncom/html/adm/fckeditor/loncapaconfig.js;
   </dependencies>
 </file>
 
+<file>
+  <source>loncom/html/adm/ckeditor/ckeditor_3.1.tar.gz</source>
+  <target dist='default'>home/httpd/html/adm/ckeditor</target>
+  <categoryname>script</categoryname>
+  <description>
+   GUI HTML Editor, scripted installation decompress the tarball and
+   installs the loncapa config.js file
+  </description>
+  <installscript>
+commands /home/httpd/html/
+  </installscript>
+  <dependencies>
+loncom/html/adm/ckeditor/commands;
+loncom/html/adm/ckeditor/ckeditor_3.1.tar.gz;
+loncom/html/adm/ckeditor/loncapaconfig.js;
+  </dependencies>
+</file>
+
 <fileglob>
   <glob>*.*</glob>
   <sourcedir>loncom/html/adm/jsMath/extensions/</sourcedir>
@@ -3897,6 +4078,97 @@ jsMath.js;
   </filenames>
 </fileglob>
 
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/js/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/js/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.3.2, UI version 1.7.2 -- without widgets
+  </description>
+  <filenames>
+	jquery-1.3.2.min.js
+	jquery-ui-1.7.2.custom.min.js
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/css/smoothness/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.3.2, UI version 1.7.2 -- stylesheets
+  </description>
+  <filenames>
+	jquery-ui-1.7.2.custom.css
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/css/smoothness/images/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/images/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.3.2, UI version 1.7.2 -- stylesheets
+  </description>
+  <filenames>
+  	ui-bg_flat_0_aaaaaa_40x100.png
+	ui-bg_flat_75_ffffff_40x100.png
+	ui-bg_glass_55_fbf9ee_1x400.png
+	ui-bg_glass_65_ffffff_1x400.png
+	ui-bg_glass_75_dadada_1x400.png
+	ui-bg_glass_75_e6e6e6_1x400.png
+	ui-bg_glass_95_fef1ec_1x400.png
+	ui-bg_highlight-soft_75_cccccc_1x100.png
+	ui-icons_2e83ff_256x240.png
+	ui-icons_222222_256x240.png
+	ui-icons_454545_256x240.png
+	ui-icons_888888_256x240.png
+	ui-icons_cd0a0a_256x240.png
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/css/ui-lightness/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/ui-lightness/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.3.2, UI version 1.7.2 -- stylesheets
+  </description>
+  <filenames>
+	jquery-ui-1.7.2.custom.css
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/css/ui-lightness/images/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/ui-lightness/images/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.3.2, UI version 1.7.2 -- stylesheets
+  </description>
+  <filenames>
+	ui-bg_diagonals-thick_18_b81900_40x40.png
+	ui-bg_diagonals-thick_20_666666_40x40.png
+	ui-bg_flat_10_000000_40x100.png
+	ui-bg_glass_65_ffffff_1x400.png
+	ui-bg_glass_100_f6f6f6_1x400.png
+	ui-bg_glass_100_fdf5ce_1x400.png
+	ui-bg_gloss-wave_35_f6a828_500x100.png
+	ui-bg_highlight-soft_75_ffe45c_1x100.png
+	ui-bg_highlight-soft_100_eeeeee_1x100.png
+	ui-icons_228ef1_256x240.png
+	ui-icons_222222_256x240.png
+	ui-icons_ef8c08_256x240.png
+	ui-icons_ffd27a_256x240.png
+	ui-icons_ffffff_256x240.png
+  </filenames>
+</fileglob>
+
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -4231,6 +4503,14 @@ The handler displays messages, has routi
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/courseprefs.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/courseprefs.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface for displaying/modifying course configuration
+  </description>
+</file>
+<file>
 <source>loncom/homework/hint.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/hint.pm</target>
 <categoryname>handler</categoryname>
@@ -4404,15 +4684,6 @@ Displays the Main menu
   <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonremote.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonremote.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Handler to launch and collapse the remote control.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/interface/portfolio.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/portfolio.pm</target>
 <categoryname>handler</categoryname>
@@ -4636,6 +4907,15 @@ Tags Default Definition Module
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/lontable.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lontable.pm</target>
+<categoryname>server standard</categoryname>
+<description>
+Table object
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/run.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/run.pm</target>
 <categoryname>handler</categoryname>
@@ -4778,6 +5058,15 @@ handles request to the CAPA homework pro
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/lonr.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonr.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    routines to simplify talking to the R client
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/Safe.pm</source>
 <target dist='default'>home/httpd/lib/perl/Safe.pm</target>
 <categoryname>handler</categoryname>
@@ -4981,6 +5270,18 @@ loncom/build/pod2html.sh ../auth/loncacc
 </dependencies>
 </file>
 <file>
+<source>loncom/auth/lonstatusacc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstatusacc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+This module provides access to server status - Apache's server-status and
+files in the /home/httpd/html/lon-status directory, for which it is invoked 
+by the URL-related pattern syntax:
+<tt>LocationMatch "^/+lon-status/.*"</tt>.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/lonauth.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonauth.pm</target>
 <categoryname>handler</categoryname>
@@ -5009,6 +5310,13 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/lonipcheck.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonipcheck.pm</target>
+<categoryname>handler</categoryname>
+<description>Checks IP-based access control settings - disable subsequent PerlHandlers if client's IP is blocked</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/londatecheck.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londatecheck.pm</target>
 <categoryname>handler</categoryname>
@@ -5247,7 +5555,7 @@ Domain information serving.
 <file>
 <source>loncom/mime.types</source>
 <target dist='default'>etc/httpd/conf/mime.types</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/mime.types</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 debian5 ubuntu6 ubuntu8'>etc/apache2/mime.types</target>
 <categoryname>www static conf</categoryname>
 <description>Expanded mime.types</description>
 </file>
@@ -5347,6 +5655,14 @@ A blank page with very minimal HTML stru
 A blank page which calls drawwindow in its opener after being loaded.
 </description>
 </file>
+<file>
+<source>loncom/includepsheader.ps</source>
+<target dist='default'>home/httpd/lib/includepsheader.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+Extra header for dvips
+</description>
+</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>rat/images/</sourcedir>
@@ -5496,13 +5812,17 @@ logos and general widget icons
 <filenames>
 SMETE_white.gif;
 aboutlon.gif;
-aboutlon_pt.gif;
 aboutlon_de.gif;
+aboutlon_pt.gif;
 accessbutton.gif;
-accessbutton_pt.gif;
 accessbutton_de.gif;
+accessbutton_pt.gif;
 angry.gif;
+arrow.closed.gif;
+arrow.open.gif;
+arrow.up.gif;
 arrow_up.gif;
+avi.gif;
 baeh.gif;
 bigsmile.gif;
 branch.gif;
@@ -5549,10 +5869,12 @@ html_big.gif;
 huh.gif;
 jar.gif;
 jar_big.gif;
+jpeg.gif;
 jpg.gif;
 jpg_big.gif;
 latex.gif;
 library.gif;
+lightGreyBG.png;
 lipsrsealed.gif;
 lite.gif;
 liteani.gif;
@@ -5565,6 +5887,7 @@ lonhelplogos.gif;
 lonhelptop.gif;
 lonlogo.gif;
 lonlogos.gif;
+lonUtilityIcon.png;
 lowerleft.gif;
 lowerright.gif;
 mailbkgrd.gif;
@@ -5576,6 +5899,8 @@ mov.gif;
 mov_big.gif;
 move_up.gif;
 move_down.gif;
+mpeg.gif;
+mpg.gif;
 navmap.correct.gif;
 navmap.partial.gif;
 navmap.ellipsis.gif;
@@ -5603,6 +5928,9 @@ problem_big.gif;
 ps.gif;
 ps_big.gif;
 rolleyes.gif;
+qt.gif;
+qti.gif;
+qtm.gif;
 quill.gif;
 quiz.gif;
 quiz_big.gif;
@@ -5613,11 +5941,13 @@ server.gif;
 server_big.gif;
 shocked.gif;
 smiley.gif;
+spreadsheet.gif;
 srvbad.gif;
 srvempty.gif;
 srvgood.gif;
 srvhalf.gif;
 srvnull.gif;
+stift.gif;
 survey.gif;
 survey_big.gif;
 task.gif;
@@ -5625,6 +5955,7 @@ task_big.gif;
 tex.gif;
 tex_big.gif;
 tth.gif;
+text.gif;
 txt.gif;
 txt_big.gif;
 unknown.gif;
@@ -5639,6 +5970,7 @@ userauthentication_de.gif;
 wav.gif;
 wav_big.gif;
 white_space_20_22.gif;
+whitespace_21.gif;
 whitespace1.gif;
 whitespace10.gif;
 whitespace2.gif;
@@ -5650,6 +5982,7 @@ whitespace7.gif;
 whitespace8.gif;
 whitespace9.gif;
 wink.gif;
+wmv.gif;
 xls.gif;
 xls_big.gif;
 xml.gif;
@@ -5806,6 +6139,16 @@ entries.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/configuration/Firewall.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/Firewall.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Provides methods to open and close firewall ports used for  
+for socket-based communication between LON-CAPA servers
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/ConfigFileEdit.pm</source>
 <target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
 <categoryname>system file</categoryname>
@@ -5835,8 +6178,8 @@ modules/TexConvert/tthperl/commands
 commands;
 compiles/tth.so.i386;
 compiles/tth.so.x86_64;
-compiles/tth.so.i386.fedora9;
-compiles/tth.so.x86_64.fedora9;
+compiles/tth.so.i386.perl.5.10;
+compiles/tth.so.x86_64.perl.5.10;
 </dependencies>
 </file>
 <file>
@@ -5924,12 +6267,14 @@ loncom/cgi/mimeTeX/commands
 commands;
 gfuntype.c;
 gifsave.c;
+loncapanewcommands.h;
 mimetex.c;
 mimetex.h;
 mimetex.html;
 README;
 texfonts.h;
 LICENSE;
+VERSION;
 </dependencies>
 </file>
 <fileglob>
@@ -6201,61 +6546,6 @@ tmcc.tab;
 </fileglob>
 <fileglob>
 <glob>*.gif</glob>
-<sourcedir>loncom/html/adm/lonLCDfont/</sourcedir>
-<targetdir dist='default'>home/httpd/html/adm/lonLCDfont/</targetdir>
-<categoryname>graphic file</categoryname>
-<description>LON-CAPA remote control LCD font</description>
-<filenames>
-0.gif;
-1.gif;
-2.gif;
-3.gif;
-4.gif;
-5.gif;
-6.gif;
-7.gif;
-8.gif;
-9.gif;
-a.gif;
-b.gif;
-c.gif;
-d.gif;
-e.gif;
-f.gif;
-g.gif;
-h.gif;
-i.gif;
-j.gif;
-k.gif;
-l.gif;
-m.gif;
-n.gif;
-o.gif;
-p.gif;
-q.gif;
-r.gif;
-s.gif;
-t.gif;
-u.gif;
-v.gif;
-w.gif;
-x.gif;
-y.gif;
-z.gif;
-ö.gif;
-ä.gif;
-ü.gif;
-ä.gif;
-ö.gif;
-ü.gif;
-colon.gif;
-hyphen.gif;
-slash.gif;
-space.gif;
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/pt/</sourcedir>
 <targetdir dist='default'>home/httpd/html/res/adm/pages/pt/</targetdir>
 <categoryname>graphic file</categoryname>
@@ -6300,86 +6590,28 @@ vbkm_pt.gif;
 <categoryname>graphic file</categoryname>
 <description>icons used for the entire LON-CAPA user interface</description>
 <filenames>
-anno.gif;
-anot.gif;
-back.gif;
-bchat.gif;
-bkm.gif;
-blog.gif;
-bl_step1.gif;
-bl_step2.gif;
-bl_step3.gif;
-bl_step4.gif;
-bl_step5.gif;
-bl_step6.gif;
-bl_step7.gif;
-bl_step8.gif;
-bl_step9.gif;
-brws.gif;
-catalog.gif;
-ccat.gif;
-ccrs.gif;
 chat.gif;
-chrt.gif;
-clst.gif;
-com.gif;
-conf.gif;
-courses.gif;
-cprv.gif;
-cstr.gif;
-del.gif;
+close-all-folders.gif;
+close-navigation.gif;
 dempty.gif;
-docs.gif;
-egrd.gif;
 empty.gif;
-enrl.gif;
-eval.gif;
-fdbk.gif;
 feedback.gif;
-forw.gif;
-grds.gif;
-grps.gif;
 group.gif;
 help.gif;
 info.gif;
-keys.gif;
 ledblink.gif;
 ledgreen.gif;
 ledoff.gif;
 ledon.gif;
-ledsend.gif;
-list.gif;
-logout.gif;
-mail.gif;
-mcrs.gif;
-mrk.gif;
-nav.gif;
-new.gif;
+mark-discussionentries-read.gif;
 next.gif;
 nothumb.gif;
-parm.gif;
-pcstr.gif;
-pgrd.gif;
-port.gif;
-pparm.gif;
-pref.gif;
-prt.gif;
-pub.gif;
+open-all-folders.gif;
+open-first-problem.gif;
 qempty.gif;
-reload.gif;
-remotebg.gif;
-res.gif;
-roles.gif;
-rtrv.gif;
-sbkm.gif;
-sctr.gif;
-spacer.gif;
-sprs.gif;
-src.gif;
-stat.gif;
-subm.gif;
-title.gif;
-vbkm.gif;
+show-all.gif;
+show-incomplete-problems.gif;
+start-navigation.gif;
 </filenames>
 </fileglob>
 <fileglob>
@@ -6408,6 +6640,7 @@ roles.png;
 sprs.png;
 vbkm.png;
 anot.png;
+anot2.png;
 blog.png;
 chrt.png;
 cprv.png;
@@ -6420,8 +6653,11 @@ mcrs.png;
 parm.png;
 port.png;
 prt.png;
+rcrs.png;
+rsrv.png;
 sbkm.png;
 src.png;
+srvr.png;
 subm.png;
 back.png;
 catalog.png;
@@ -6438,6 +6674,77 @@ res.png;
 rtrv.png;
 sctr.png;
 stat.png;
+pdfupload.png;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.png</glob>
+<sourcedir>loncom/html/res/adm/pages/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>graphical icons used in submenus</description>
+<filenames>
+aboutme.png;
+addClickerInfoFile.png;
+comblock.png;
+contact-new.png;
+coprplot.png;
+dialog-information.png;
+document-open.png;
+document-properties.png;
+dropbox.png;
+dump.png;
+edit-copy.png;
+edit-find-replace.png;
+edit-find.png;
+edit-redo.png;
+edit-select-all.png;
+edit-undo.png;
+emblem-photos.png;
+emblem-readonly.png;
+emblem-system.png;
+extres.png;
+folder-new.png;
+format-justify-fill.png;
+fromfile.png;
+groupportfolio.png;
+grp_add.png;
+grp_settings.png;
+grp_tools.png;
+ims.png;
+imsexport.png;
+list-add.png;
+log.png;
+mail-message-new.png;
+mail-reply-all.png;
+mail-reply-sender.png;
+messalog.png;
+myaboutme.png;
+navigation.png;
+network-workgroup.png;
+page.png;
+preferences-desktop-font.png;
+preferences-desktop-locale.png;
+preferences-desktop-remote-desktop.png;
+preferences-desktop-theme.png;
+preferences-desktop-wallpaper.png;
+preferences-system-windows.png;
+recover.png;
+remotecontrol.png;
+resversion.png;
+scoreupfrm.png;
+selfenrl-queue.png;
+sequence.png;
+simple.png;
+simpprob.png;
+start-here.png;
+subtimpl.png;
+syllabus.png;
+symbs.png;
+system-lock-screen.png;
+system-users.png;
+uploadscores.png;
+verify.png;
 </filenames>
 </fileglob>
 <file>
@@ -6464,14 +6771,6 @@ image maps for the LON-CAPA remote contr
 welcoming page to the LON-CAPA system upon login
 </description>
 </file>
-<file>
-<source>loncom/html/res/adm/pages/menu.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/menu.html</target>
-<categoryname>interface file</categoryname>
-<description>
-renders the HTML (including image maps) for the LON-CAPA remote control
-</description>
-</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/indexericons/</sourcedir>
@@ -6754,7 +7053,7 @@ file that allows setuid password privile
 <file>
 <source>loncom/init.d/loncontrol</source>
 <target dist='default'>etc/rc.d/init.d/loncontrol</target>
-<target dist='suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3'>etc/init.d/loncontrol</target>
+<target dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 debian5 ubuntu6 ubuntu8'>etc/init.d/loncontrol</target>
 <categoryname>root script</categoryname>
 <description>
 Controls the launching/halting of lonc, lond, and lonsql processes.
@@ -6762,7 +7061,7 @@ Controls the launching/halting of lonc,
 </file>
 <link>
 <linkto dist='default'>etc/rc.d/init.d/loncontrol</linkto>
-<linkto dist='suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3'>etc/init.d/loncontrol</linkto>
+<linkto dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 debian5 ubuntu6 ubuntu8'>etc/init.d/loncontrol</linkto>
 <target dist='default'>
 etc/rc.d/rc0.d/K05loncontrol;
 etc/rc.d/rc1.d/K05loncontrol;
@@ -6772,19 +7071,19 @@ etc/rc.d/rc4.d/S95loncontrol;
 etc/rc.d/rc5.d/S95loncontrol;
 etc/rc.d/rc6.d/K05loncontrol
 </target>
-<target dist='suse10.2 suse10.3'></target>
 <categoryname>symbolic link</categoryname>
 <description>
-symbolic links to /etc/rc.d/init.d/loncontrol for run-levels</description>
+symbolic links to /etc/rc.d/init.d/loncontrol (redhat/fedora) or /etc/init.d/loncontrol (suse/debian) for run-levels
+</description>
 </link>
 
-<file dist="suse10.2 suse10.3">
+<file dist="suse10.2 suse10.3 suse11.1 suse11.2">
   <source>loncom/init.d/loncontrol</source>
   <target>etc/rc.d/</target>
   <description>
     setup loncontrol to run at boot
   </description>
-  <installscript dist="suse10.2 suse10.3">
+  <installscript dist="suse10.2 suse10.3 suse11.1 suse11.2">
 -c 'chkconfig --del loncontrol;chkconfig loncontrol 345;chkconfig --list loncontrol'
   </installscript>
   <dependencies>
@@ -6912,6 +7211,31 @@ of users, and (b) to display e-mail of t
   </description>
 </file>
 <file>
+  <source>loncom/interface/domainstatus.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/domainstatus.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for generation of a menu of links to server status utilities
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonconfigsettings.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonconfigsettings.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Common routines for generating menus to set default configuration settings -  
+   for a domain or for a course.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonpdfupload.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpdfupload.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Interface to upload a PDF form containing responses to problems entered offline using a PDF reader for storage as submissions.
+  </description>
+</file>
+<file>
   <source>loncom/interface/lonpopulate.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonpopulate.pm</target>
   <categoryname>handler</categoryname>
@@ -6984,6 +7308,14 @@ of users, and (b) to display e-mail of t
   </description>
 </file>
 <file>
+  <source>loncom/interface/lonblockingstatus.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonblockingstatus.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Used for displaying the communication blocking status.
+  </description>
+</file>
+<file>
   <source>loncom/automation/Autocreate.pl</source>Autocreate.pl
   <target dist='default'>home/httpd/perl/Autocreate.pl</target>
   <categoryname>script</categoryname>
@@ -7012,6 +7344,7 @@ modify_config_files.pl;
 parse_scantron.pl;
 seed_accesscount.pl;
 stress.pl;
+testkerberos.pl;
 unescape.pl;
 user_login_count.pl;
 </filenames>