--- doc/loncapafiles/loncapafiles.lpml	2011/02/28 03:39:05	1.729
+++ doc/loncapafiles/loncapafiles.lpml	2011/12/28 21:50:07	1.779
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.729 2011/02/28 03:39:05 raeburn Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.779 2011/12/28 21:50:07 raeburn Exp $ -->
 
 <!--
 
@@ -122,6 +122,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0400</chmod><chown dist='default'>www:www</chown>
   <abbreviation>graphicfile</abbreviation>
 </category>
+<category name="lexicon file" type="runtime">
+  <chmod dist='default'>0444</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>lexicon</abbreviation>
+</category>
+<category name="lexicon file" type="development">
+  <chmod dist='default'>0444</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>lexicon</abbreviation>
+</category>
 <category name="doc" type="runtime">
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>systemfile</abbreviation>
@@ -242,10 +250,22 @@ echo '**********************************
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/httpd/conf</targetdir>
+  <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/apache2</targetdir>
   <categoryname>standard</categoryname>
   <description>web configuration files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>etc/httpd/conf/rewrites</targetdir>
+  <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd/rewrites</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/apache2/rewrites</targetdir>
+  <categoryname>standard</categoryname>
+  <description>
+  default configuration files to enable/disable http:// -> https:// rewrites
+  </description>
+</directory>
+<directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/pam.d</targetdir>
   <categoryname>standard</categoryname>
@@ -255,56 +275,56 @@ echo '**********************************
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4'>etc/init.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4'>etc/rc0.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4'>etc/rc1.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4'>etc/rc2.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4'>etc/rc3.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4'>etc/rc4.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4'>etc/rc5.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4'>etc/rc6.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
@@ -333,6 +353,12 @@ echo '**********************************
   <description>perl scripts for debugging the LON-CAPA system</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/perl/manage_dns</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>perl scripts for cluster table management on LON-CAPA DNS servers</description>
+</directory>
+<directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl/logs</targetdir>
   <categoryname>server standard</categoryname>
@@ -465,6 +491,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/priv</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>root of hosted authors' construction spaces tree</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res</targetdir>
   <categoryname>server standard</categoryname>
   <description>root of resource tree</description>
@@ -519,6 +551,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/MathJax</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>MathJax files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/jsMath</targetdir>
   <categoryname>server readonly</categoryname>
   <description>jsMath support files</description>
@@ -573,18 +611,6 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/ui-lightness</targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>jQuery JavaScript library -- css files</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/ui-lightness/images</targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>jQuery JavaScript library -- css images</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness</targetdir>
   <categoryname>server readonly</categoryname>
   <description>jQuery JavaScript library -- css files</description>
@@ -909,7 +935,7 @@ each list element consists of only two s
 <file>
 <source>loncom/loncapa.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa.conf</target>
 <categoryname>conf</categoryname>
 <description>
 <p>
@@ -952,7 +978,7 @@ MySQL database</td></tr>
 <file>
 <source>loncom/loncapa_apache.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa_apache.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa_apache.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa_apache.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 The goal of this file is to implement all LON-CAPA specific
@@ -972,7 +998,7 @@ the www@localhost MySQL password, and br
 <file>
 <source>loncom/startup.pl</source>
 <target dist='default'>etc/httpd/conf/startup.pl</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/startup.pl</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/startup.pl</target>
 <categoryname>static conf</categoryname>
 <description>
 This file provides initializations for perl handlers.  It adjusts what
@@ -992,6 +1018,39 @@ symbolic link to directory /etc/apache2
 </description>
 </link>
 <file>
+<source>loncom/rewrites/loncapa_rewrite_off.conf</source>
+<target dist='default'>etc/httpd/conf/loncapa_rewrite.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa_rewrite.conf</target>
+<categoryname>conf</categoryname>
+<description>
+Default rewrite file. 
+Default is to disable rewriting of external requests for http:// to https:// 
+by setting: RewriteEngine off
+</description>
+</file>
+<file>
+<source>loncom/rewrites/loncapa_rewrite_on.conf</source>
+<target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_on.conf</target>
+<target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_on.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/rewrites/loncapa_rewrite_on.conf</target>
+<categoryname>static conf</categoryname>
+<description>
+File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to enable rewriting of
+external requests for http:// to https:// 
+</description>
+</file>
+<file>
+<source>loncom/rewrites/loncapa_rewrite_off.conf</source>
+<target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_off.conf</target>
+<target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_off.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/rewrites/loncapa_rewrite_off.conf</target>
+<categoryname>static conf</categoryname>
+<description>
+File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to disable rewriting of
+external requests for http:// to https:// 
+</description>
+</file>
+<file>
 <source>loncom/thesaurus/thesaurus.db</source>
 <target dist='default'>home/httpd/lonTabs/thesaurus.db</target>
 <categoryname>system file</categoryname>
@@ -1113,6 +1172,14 @@ utility cgi script to view status of per
   </description>
 </file>
 <file>
+  <source>loncom/lonmap.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmap.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides a module to read course files into hashes.
+  </description>
+</file>
+<file>
   <source>loncom/cgi/lonauthcgi.pm</source>
   <target dist='default'>home/httpd/lib/perl/LONCAPA/lonauthcgi.pm</target>
   <categoryname>system file</categoryname>
@@ -1315,6 +1382,8 @@ custompartial.problem;
 custompartial.problem.meta;
 CustomResponse.problem;
 CustomResponse.problem.meta;
+customunit.problem;
+customunit.problem.meta;
 Essay.problem;
 Essay.problem.meta;
 examupload.problem;
@@ -1325,6 +1394,8 @@ functionplottwo.problem;
 functionplottwo.problem.meta;
 functionplotback.problem;
 functionplotback.problem.meta;
+functionplotvector.problem;
+functionplotvector.problem.meta;
 HintFormula.problem;
 HintFormula.problem.meta;
 HintMathResponse.problem;
@@ -1333,6 +1404,8 @@ man1.jpg;
 man1.jpg.meta;
 numerical.problem;
 numerical.problem.meta;
+numPrePro.problem;
+numPrePro.problem.meta;
 Plot.problem.meta;
 Plot_curve.problem;
 Plot_curve.problem.meta;
@@ -1370,6 +1443,8 @@ SimpleFormulaCAS.problem;
 SimpleFormulaCAS.problem.meta;
 StringResponse.problem;
 StringResponse.problem.meta;
+stringPrePro.problem;
+stringPrePro.problem.meta;
 SimpleMatching.problem;
 SimpleMatching.problem.meta;
 SimpleMathResponse.problem;
@@ -1458,6 +1533,14 @@ and privileges available in the network
 </description>
 </file>
 <file>
+<source>loncom/managers.tab</source>
+<target dist='default'>home/httpd/lonTabs/managers.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+List of machines allowed to pass along updates to dns_hosts.tab and dns_domain.tab
+</description>
+</file>
+<file>
 <source>loncom/misc/releaseslist.xml</source>
 <target dist='default'>home/httpd/lonTabs/releaseslist.xml</target>
 <categoryname>static conf</categoryname>
@@ -1753,6 +1836,15 @@ loncom/build/CHECKRPMS
 <description>CGI script that shows users currently on machine</description>
 </file>
 <file>
+<source>loncom/cgi/listdomconfig.pl</source>
+<target dist='default'>home/httpd/cgi-bin/listdomconfig.pl</target>
+<categoryname>script</categoryname>
+<description>CGI script to display domain configuration as plain text.
+For use on the primary library server for a domain. Access control uses
+routines in lonauthcgi.pm
+</description>
+</file>
+<file>
 <source>loncom/homework/templates/sampleexternal.pl</source>
 <target dist='default'>home/httpd/cgi-bin/sampleexternal.pl</target>
 <categoryname>script</categoryname>
@@ -1865,25 +1957,23 @@ new user.
 <status>being updated</status>
 </file>
 <file>
-<source>loncom/lchtmldir</source>
-<target dist='default'>home/httpd/perl/lchtmldir</target>
+<source>loncom/lciptables</source>
+<target dist='default'>home/httpd/perl/lciptables</target>
 <categoryname>setuid script</categoryname>
 <description>
-Manages the file system ramifications of adding author mode to a user. 
-If necessary a public_html diretory is added, permissions and ownership are
-set according to the user's authentication mode.
+Calls iptables to update firewall settings for port used for internal
+LON-CAPA communication to receive traffic from other servers in cluster
 </description>
 <status>New file</status>
 </file>
 <file>
-<source>loncom/lciptables</source>
-<target dist='default'>home/httpd/perl/lciptables</target>
+<source>loncom/lchttpdlogs</source>
+<target dist='default'>home/httpd/perl/lchttpdlogs</target>
 <categoryname>setuid script</categoryname>
 <description>
-Calls iptables to update firewall settings for port used for internal
-LON-CAPA communication to receive traffic from other servers in cluster
+script called by loncron to tail latest web server access and error logs.
 </description>
-<status>New file</status>
+<status>works/verified</status>
 </file>
 <file>
 <source>loncom/lcuserdel</source>
@@ -2202,6 +2292,15 @@ Handler for a DC to pick an author from
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonpickresource.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickresource.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a resource or folder from the course contents
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonpickuser.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpickuser.pm</target>
 <categoryname>handler</categoryname>
@@ -2570,6 +2669,7 @@ extres.gif;
 fdbk.gif;
 feedback.gif;
 formulaResponse.gif;
+FPRexamples.gif;
 fromfile.gif;
 grds.gif;
 grps.gif;
@@ -2639,6 +2739,7 @@ subtimpl.gif;
 survey_rep.gif;
 syllabus.gif;
 system-users.gif;
+turning.gif;
 uploadscores.gif;
 uplusr.gif;
 vbkm.gif;
@@ -2717,6 +2818,7 @@ extres.eps;
 fdbk.eps;
 feedback.eps;
 formulaResponse.eps;
+FPRexamples.eps;
 fromfile.eps;
 grds.eps;
 grps.eps;
@@ -2785,6 +2887,7 @@ subtimpl.eps;
 survey_rep.eps;
 syllabus.eps;
 system-users.eps;
+turning.eps;
 uploadscores.eps;
 uplusr.eps;
 vbkm.eps;
@@ -2950,6 +3053,7 @@ Course_Prefs_Discussions.tex;
 Course_Prefs_General.tex;
 Course_Prefs_Other.tex;
 Course_Problem_Weight.tex;
+Course_Requests.tex;
 Course_Request_Access_End.tex;
 Course_Request_Access_Start.tex;
 Course_Request_Autoadd.tex;
@@ -2984,6 +3088,7 @@ Creating_New_Content_Pages.tex;
 Creating_Online_Problems.tex;
 Creating_Radio_Response_Problems.tex;
 Custom_Response_Problems.tex;
+Deleting_Domain_Coordinators.tex;
 Developer_Manual_Title_Page.tex;
 Developer_Tutorial.tex;
 Distribute_Messages.tex;
@@ -3032,6 +3137,7 @@ Domain_Configuration_Quotas.tex;
 Domain_Configuration_Request_Courses.tex;
 Domain_Configuration_Scantron_Format.tex;
 Domain_Configuration_Server_Status.tex;
+Domain_Configuration_SSL.tex;
 Domain_Configuration_User_Creation.tex;
 Domain_Configuration_User_Modification.tex;
 Domain_Configuration_User_Sessions.tex;
@@ -3073,6 +3179,11 @@ Function_Plot_Response_Rule_Set.tex;
 Function_Plot_Response_Elements.tex;
 Function_Plot_Response_Question.tex;
 Function_Plot_Response_Spline.tex;
+Function_Plot_Response_Custom_Rule.tex;
+Function_Plot_Response_Object.tex;
+Function_Plot_Response_Vector.tex;
+Function_Plot_Response_Vector_Rule.tex;
+Function_Plot_Response_Vector_Sum_Rule.tex;
 General_Intro.tex;
 Generation.tex;
 Grade_All.tex;
@@ -3097,6 +3208,7 @@ Helper_Course_Initialization.tex;
 How_To_Edit_Existing_Content_Pages.tex;
 Institutional_Integration_Authentication.tex;
 Institutional_Integration_Course_Codes.tex;
+Institutional_Integration_Course_Requests.tex;
 Institutional_Integration_Format_Checks.tex;
 Institutional_Integration_Identity_Management.tex;
 Institutional_Integration_User_Categories.tex;
@@ -3372,7 +3484,7 @@ rebuild_label_hash.sh
 </dependencies>
 </file>
 <fileglob>
-  <glob>*</glob>
+  <glob>*.*</glob>
   <sourcedir>loncom/html/adm/fonts/</sourcedir>
   <targetdir dist='default'>home/httpd/html/adm/fonts/</targetdir>
   <categoryname>interface file</categoryname>
@@ -3380,22 +3492,58 @@ rebuild_label_hash.sh
     Fonts for convertjme.pl
   </description>
   <filenames>
-AUTHORS;
-BUGS;
 DejaVuSerif-Roman.ttf;
 DejaVuSansMono-Bold.ttf;
 DejaVuSans.pfb;
 DejaVuSans.ttf;
 DejaVuSerif.pfb;
 DejaVuSerif.ttf;
-LICENSE;
-NEWS;
-README;
 status.txt;
 unicover.txt;
   </filenames>
 </fileglob>
 <file>
+<source>loncom/html/adm/fonts/AUTHORS</source>
+<target dist='default'>home/httpd/html/adm/fonts/AUTHORS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/fonts/BUGS</source>
+<target dist='default'>home/httpd/html/adm/fonts/BUGS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/LICENSE</source>
+<target dist='default'>home/httpd/html/adm/fonts/LICENSE</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/NEWS</source>
+<target dist='default'>home/httpd/html/adm/fonts/NEWS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/README</source>
+<target dist='default'>home/httpd/html/adm/fonts/README</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
 <source>loncom/interface/lonstatistics.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonstatistics.pm</target>
 <categoryname>handler</categoryname>
@@ -3855,6 +4003,7 @@ Contains a set of functions that generat
 <file>
 <source>loncom/interface/lonhtmlgateway.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonhtmlgateway.pm</target>
+<categoryname>handler</categoryname>
 <description>
 Contains a set of functions to properly parse and handle HTML input and output
 </description>
@@ -3896,7 +4045,7 @@ Localization class for Locale::Maketext
 <sourcedir>loncom/localize/localize/</sourcedir>
 <targetdir dist='default'>
 home/httpd/lib/perl/Apache/localize/</targetdir>
-<categoryname>static conf</categoryname>
+<categoryname>lexicon file</categoryname>
 <description>
 Translation files.
 </description>
@@ -4054,6 +4203,8 @@ geogebra_export.jar;
 geogebra_gui.jar.pack.gz;
 geogebra_main.jar;
 geogebra_properties.jar.pack.gz;
+geogebra_usb.jar;
+geogebra_usb.jar.pack.gz;
 jlatexmath.jar;
 jlatexmath.jar.pack.gz;
 jlm_cyrillic.jar;
@@ -4252,7 +4403,26 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
 </file>
 
 <file>
-  <source>loncom/html/adm/ckeditor/ckeditor_3.1.tar.gz</source>
+  <source>loncom/html/adm/MathJax/mathjax-MathJax-v1.1a-0-g1697387.zip</source>
+  <target dist='default'>home/httpd/html/adm/MathJax</target>
+  <categoryname>script</categoryname>
+  <description>
+   MathJax for processing Tex, scripted installation that unzips installation file
+   in the appropriate location
+   NOTE: the commands file `mv`'s the files out of the original location provided
+   unzipping the file, making it look cleaner in the /home/.../adm/ directory
+  </description>
+  <installscript>
+commands /home/httpd/html/adm/MathJax
+  </installscript>
+  <dependencies>
+loncom/html/adm/MathJax/commands;
+loncom/html/adm/MathJax/mathjax-MathJax-v1.1a-0-g1697387.zip;
+  </dependencies>
+</file>
+
+<file>
+  <source>loncom/html/adm/ckeditor/ckeditor_3.6.2.tar.gz</source>
   <target dist='default'>home/httpd/html/adm/ckeditor</target>
   <categoryname>script</categoryname>
   <description>
@@ -4264,7 +4434,7 @@ commands /home/httpd/html/
   </installscript>
   <dependencies>
 loncom/html/adm/ckeditor/commands;
-loncom/html/adm/ckeditor/ckeditor_3.1.tar.gz;
+loncom/html/adm/ckeditor/ckeditor_3.6.2.tar.gz
 loncom/html/adm/ckeditor/loncapaconfig.js;
   </dependencies>
 </file>
@@ -4342,11 +4512,11 @@ jsMath.js;
   <targetdir dist='default'>home/httpd/html/adm/jQuery/js/</targetdir>
   <categoryname>interface file</categoryname>
   <description>
-jQuery custom distribution of version 1.3.2, UI version 1.7.2 -- without widgets
+jQuery custom distribution of version 1.6.2, UI version 1.8.16
   </description>
   <filenames>
-	jquery-1.3.2.min.js;
-	jquery-ui-1.7.2.custom.min.js;
+	jquery-1.6.2.min.js;
+	jquery-ui-1.8.16.custom.min.js;
   </filenames>
 </fileglob>
 
@@ -4356,10 +4526,10 @@ jQuery custom distribution of version 1.
   <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/</targetdir>
   <categoryname>interface file</categoryname>
   <description>
-jQuery custom distribution of version 1.3.2, UI version 1.7.2 -- stylesheets
+jQuery custom distribution of version 1.6.2, UI version 1.8.16 -- stylesheets
   </description>
   <filenames>
-	jquery-ui-1.7.2.custom.css;
+	jquery-ui-1.8.16.custom.css;
   </filenames>
 </fileglob>
 
@@ -4369,7 +4539,7 @@ jQuery custom distribution of version 1.
   <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/images/</targetdir>
   <categoryname>interface file</categoryname>
   <description>
-jQuery custom distribution of version 1.3.2, UI version 1.7.2 -- stylesheets
+jQuery custom distribution of version 1.6.2, UI version 1.8.16 -- images for css.
   </description>
   <filenames>
   	ui-bg_flat_0_aaaaaa_40x100.png;
@@ -4388,45 +4558,6 @@ jQuery custom distribution of version 1.
   </filenames>
 </fileglob>
 
-<fileglob>
-  <glob>*.*</glob>
-  <sourcedir>loncom/html/adm/jQuery/css/ui-lightness/</sourcedir>
-  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/ui-lightness/</targetdir>
-  <categoryname>interface file</categoryname>
-  <description>
-jQuery custom distribution of version 1.3.2, UI version 1.7.2 -- stylesheets
-  </description>
-  <filenames>
-	jquery-ui-1.7.2.custom.css;
-  </filenames>
-</fileglob>
-
-<fileglob>
-  <glob>*.*</glob>
-  <sourcedir>loncom/html/adm/jQuery/css/ui-lightness/images/</sourcedir>
-  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/ui-lightness/images/</targetdir>
-  <categoryname>interface file</categoryname>
-  <description>
-jQuery custom distribution of version 1.3.2, UI version 1.7.2 -- stylesheets
-  </description>
-  <filenames>
-	ui-bg_diagonals-thick_18_b81900_40x40.png;
-	ui-bg_diagonals-thick_20_666666_40x40.png;
-	ui-bg_flat_10_000000_40x100.png;
-	ui-bg_glass_65_ffffff_1x400.png;
-	ui-bg_glass_100_f6f6f6_1x400.png;
-	ui-bg_glass_100_fdf5ce_1x400.png;
-	ui-bg_gloss-wave_35_f6a828_500x100.png;
-	ui-bg_highlight-soft_75_ffe45c_1x100.png;
-	ui-bg_highlight-soft_100_eeeeee_1x100.png;
-	ui-icons_228ef1_256x240.png;
-	ui-icons_222222_256x240.png;
-	ui-icons_ef8c08_256x240.png;
-	ui-icons_ffd27a_256x240.png;
-	ui-icons_ffffff_256x240.png;
-  </filenames>
-</fileglob>
-
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -4892,15 +5023,6 @@ echo 'pod2html lonparmset.pm'
 </dependencies>
 </file>
 <file>
-<source>loncom/publisher/lonconstruct.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonconstruct.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Page wrapper for handling construction space.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/publisher/lonpublisher.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpublisher.pm</target>
 <categoryname>handler</categoryname>
@@ -5821,7 +5943,7 @@ Domain information serving.
 <file>
 <source>loncom/mime.types</source>
 <target dist='default'>etc/httpd/conf/mime.types</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/mime.types</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/mime.types</target>
 <categoryname>www static conf</categoryname>
 <description>Expanded mime.types</description>
 </file>
@@ -6474,6 +6596,10 @@ compiles/tth.so.i386.perl.5.10;
 compiles/tth.so.x86_64.perl.5.10;
 compiles/tth.so.i386.perl.5.12;
 compiles/tth.so.x86_64.perl.5.12;
+compiles/tth.so.i386.perl.5.14;
+compiles/tth.so.x86_64.perl.5.14;
+compiles/tth.so.i386.debian5;
+compiles/tth.so.x86_64.debian5
 </dependencies>
 </file>
 <file>
@@ -6887,6 +7013,7 @@ vbkm_pt.gif;
 chat.gif;
 close-all-folders.gif;
 dempty.gif;
+edittoplevel.gif;
 empty.gif;
 feedback.gif;
 group.gif;
@@ -6922,6 +7049,7 @@ conf.png;
 courses.png;
 crsconf.png;
 docs.png;
+editmap.png;
 eval.png;
 grds.png;
 grps.png;
@@ -6973,6 +7101,7 @@ dismath.png;
 feedback.png;
 mngcu.png;
 prob_ana.png;
+process-stop.png;
 role_hotlist.png;
 reload.png;
 self_enroll.png;
@@ -6993,6 +7122,7 @@ addClickerInfoFile.png;
 anonsurveythreshold.png;
 bubblesheet.png;
 ccatconf.png;
+chat.png;
 comblock.png;
 contact-new.png;
 coprplot.png;
@@ -7017,6 +7147,7 @@ extres.png;
 folder-new.png;
 folder-new-22x22.png;
 format-justify-fill.png;
+FPRexamples.png;
 fromfile.png;
 grade_PageFolder.png;
 grade_students.png;
@@ -7318,7 +7449,7 @@ file that allows setuid password privile
 <file>
 <source>loncom/init.d/loncontrol</source>
 <target dist='default'>etc/rc.d/init.d/loncontrol</target>
-<target dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/init.d/loncontrol</target>
+<target dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/init.d/loncontrol</target>
 <categoryname>root script</categoryname>
 <description>
 Controls the launching/halting of lonc, lond, and lonsql processes.
@@ -7326,7 +7457,7 @@ Controls the launching/halting of lonc,
 </file>
 <link>
 <linkto dist='default'>etc/rc.d/init.d/loncontrol</linkto>
-<linkto dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/init.d/loncontrol</linkto>
+<linkto dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/init.d/loncontrol</linkto>
 <target dist='default'>
 etc/rc.d/rc0.d/K05loncontrol;
 etc/rc.d/rc1.d/K05loncontrol;
@@ -7336,10 +7467,18 @@ etc/rc.d/rc4.d/S95loncontrol;
 etc/rc.d/rc5.d/S95loncontrol;
 etc/rc.d/rc6.d/K05loncontrol
 </target>
+<target='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>
+etc/rc.d/rc0.d/K05loncontrol;
+etc/rc.d/rc1.d/K05loncontrol;
+etc/rc.d/rc2.d/K05loncontrol;
+etc/rc.d/rc3.d/S95loncontrol;
+etc/rc.d/rc5.d/S95loncontrol;
+etc/rc.d/rc6.d/K05loncontrol
+</target>
 <target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>
 etc/rc0.d/K05loncontrol;
 etc/rc1.d/K05loncontrol;
-etc/rc2.d/K05loncontrol;
+etc/rc2.d/S95loncontrol;
 etc/rc3.d/S95loncontrol;
 etc/rc4.d/S95loncontrol;
 etc/rc5.d/S95loncontrol;
@@ -7351,14 +7490,14 @@ symbolic links to /etc/rc.d/init.d/lonco
 </description>
 </link>
 
-<file dist="suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4">
+<file dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 sles9 sles10 sles11">
   <source>loncom/init.d/loncontrol</source>
   <target>etc/rc.d/</target>
   <description>
     setup loncontrol to run at boot
   </description>
-  <installscript dist="suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4">
--c 'chkconfig --del loncontrol;chkconfig loncontrol 345;chkconfig --list loncontrol'
+  <installscript dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 sles9 sles10 sles11">
+-c 'chkconfig --del loncontrol;chkconfig loncontrol 35;chkconfig --list loncontrol'
   </installscript>
   <dependencies>
 loncom/init.d/loncontrol
@@ -7582,6 +7721,15 @@ of users, and (b) to display e-mail of t
   </description>
 </file>
 <file>
+  <source>loncom/interface/lonblockingmenu.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonblockingmenu.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Handler for configuration of blocking of access to collaborative tools and/or
+resources for the duration of an exam.
+  </description>
+</file>
+<file>
   <source>loncom/interface/lonblockingstatus.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonblockingstatus.pm</target>
   <categoryname>handler</categoryname>
@@ -7633,6 +7781,7 @@ excise_from_db.pl;
 getties.pl;
 login_count.pl;
 modify_config_files.pl;
+move_construction_spaces.pl;
 parse_scantron.pl;
 seed_accesscount.pl;
 stress.pl;
@@ -7642,7 +7791,7 @@ user_login_count.pl;
 </filenames>
 </fileglob>
 <fileglob>
-    <glob>*</glob>
+    <glob>*.*</glob>
     <sourcedir>loncom/debugging_tools/compiled/</sourcedir>
     <targetdir dist='default'>home/httpd/perl/debug/</targetdir>
     <categoryname>script</categoryname>
@@ -7650,13 +7799,34 @@ user_login_count.pl;
       Binary tools for LON-CAPA
     </description>
 <filenames>
-create_db_dynamic;
-create_db_dynamic_64;
 create_db_dynamic_64_so.3;
-dump_db_static_32;
 </filenames>
 </fileglob>
 <file>
+<source>loncom/debugging_tools/compiled/create_db_dynamic</source>
+<target dist='default'>home/httpd/perl/debug/create_db_dynamic</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/compiled/create_db_dynamic_64</source>
+<target dist='default'>home/httpd/perl/debug/create_db_dynamic_64</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/compiled/dump_db_static_32</source>
+<target dist='default'>home/httpd/perl/debug/dump_db_static_32</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
+<file>
 <source>loncom/build/distprobe</source>
 <target dist='default'>home/httpd/perl/distprobe</target>
 <categoryname>script</categoryname>
@@ -7666,5 +7836,15 @@ for probing operating system flavor and
 <note>
 </note>
 </file>
+<file>
+<source>loncom/clusteradmin</source>
+<target dist='default'>home/httpd/perl/manage_dns/clusteradmin</target>
+<categoryname>root script</categoryname>
+<description>
+Script to update cluster tables: dns_hosts.tab and dns_domain.tab
+on a LON-CAPA DNS server.  
+</description>
+<status>works/unverified</status>
+</file>
 </files>
 </lpml>