--- doc/loncapafiles/loncapafiles.lpml	2006/09/28 00:36:34	1.499.2.6
+++ doc/loncapafiles/loncapafiles.lpml	2012/03/16 01:43:56	1.793
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.499.2.6 2006/09/28 00:36:34 albertel Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.793 2012/03/16 01:43:56 raeburn Exp $ -->
 
 <!--
 
@@ -98,6 +98,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>configurable</abbreviation>
 </category>
+<category name="www conf" type="runtime">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>configurable</abbreviation>
+</category>
+<category name="www conf" type="development">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>configurable</abbreviation>
+</category>
 <category name="script" type="runtime">
   <chmod dist='default'>0500</chmod><chown dist='default'>www:www</chown>
   <abbreviation>script</abbreviation>
@@ -114,6 +122,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0400</chmod><chown dist='default'>www:www</chown>
   <abbreviation>graphicfile</abbreviation>
 </category>
+<category name="lexicon file" type="runtime">
+  <chmod dist='default'>0444</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>lexicon</abbreviation>
+</category>
+<category name="lexicon file" type="development">
+  <chmod dist='default'>0444</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>lexicon</abbreviation>
+</category>
 <category name="doc" type="runtime">
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>systemfile</abbreviation>
@@ -178,6 +194,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0700</chmod><chown dist='default'>www:www</chown>
   <abbreviation>directory</abbreviation>
 </category>
+<category name="pdf manual" type="runtime">
+  <chmod dist='default'>0444</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>manual</abbreviation>
+</category>
+<category name="pdf manual" type="development">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>manual</abbreviation>
+</category>
 </categories>
 <rpm>
   <rpmSummary>Basic files for running a LON-CAPA server.</rpmSummary>
@@ -234,10 +258,22 @@ echo '**********************************
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/httpd/conf</targetdir>
+  <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/apache2</targetdir>
   <categoryname>standard</categoryname>
   <description>web configuration files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>etc/httpd/conf/rewrites</targetdir>
+  <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd/rewrites</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/apache2/rewrites</targetdir>
+  <categoryname>standard</categoryname>
+  <description>
+  default configuration files to enable/disable http:// -> https:// rewrites
+  </description>
+</directory>
+<directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/pam.d</targetdir>
   <categoryname>standard</categoryname>
@@ -247,56 +283,56 @@ echo '**********************************
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
-  <targetdir dist='debian'>etc/init.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
-  <targetdir dist='debian'>etc/rc0.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
-  <targetdir dist='debian'>etc/rc1.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
-  <targetdir dist='debian'>etc/rc2.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
-  <targetdir dist='debian'>etc/rc3.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
-  <targetdir dist='debian'>etc/rc4.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
-  <targetdir dist='debian'>etc/rc5.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
-  <targetdir dist='debian'>etc/rc6.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
@@ -325,6 +361,12 @@ echo '**********************************
   <description>perl scripts for debugging the LON-CAPA system</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/perl/manage_dns</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>perl scripts for cluster table management on LON-CAPA DNS servers</description>
+</directory>
+<directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl/logs</targetdir>
   <categoryname>server standard</categoryname>
@@ -356,6 +398,37 @@ Used by lond parent to check if children
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/zipspool</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>for the output of multidownload.pl
+  </description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/captchaspool</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>for temporary storage of Captcha images</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/captchadb</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>for temporary storage of Captcha codes</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/webdav</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>for storage of webdav DAVLock files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/webdav/sessionIDs</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>for storage of webdav session files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of LON-CAPA software modules and
@@ -438,6 +511,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/priv</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>root of hosted authors' construction spaces tree</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res</targetdir>
   <categoryname>server standard</categoryname>
   <description>root of resource tree</description>
@@ -456,111 +535,172 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/htmlarea</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/rat</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>Web directory for HTMLArea</description>
+  <description>home of the rat</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/htmlarea/images</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/fonts</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>Images for HTMLArea</description>
+  <description>fonts</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/htmlarea/lang</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/help</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>Language files for HTMLArea</description>
+  <description>online help documentation</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/htmlarea/plugins</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/jme</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>Plugins for HTMLArea</description>
+  <description>JME support files</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/jmol</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>FullPage plugin for HTMLArea</description>
+  <description>Jmol files</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage/img</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/geogebra</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>FullPage plugin for HTMLArea</description>
+  <description>GeoGebra files</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage/lang</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/MathJax</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>FullPage plugin for HTMLArea</description>
+  <description>MathJax files</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage/popups</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>FullPage plugin for HTMLArea</description>
+  <description>jsMath support files</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/htmlarea/popups</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/extensions</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>Popup windows for HTMLArea</description>
+  <description>jsMath extension files</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/rat</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/uncompressed</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>home of the rat</description>
+  <description>jsMath files (uncompressed)</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/fonts</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/plugins</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>fonts</description>
+  <description>jsMath plugin files</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/help</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>online help documentation</description>
+  <description>Formula editor</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/jme</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/ckeditor</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>JME support files</description>
+  <description>Rich Text Editor</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/jmol</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>Jmol files</description>
+  <description>jQuery JavaScript library</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/jsMath</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/js</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>jsMath support files</description>
+  <description>jQuery JavaScript library -- js files</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/jsMath/extensions</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>jsMath extension files</description>
+  <description>jQuery JavaScript library -- css files</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/jsMath/uncompressed</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>jsMath files (uncompressed)</description>
+  <description>jQuery JavaScript library -- css files</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/jsMath/plugins</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/images</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>jsMath plugin files</description>
+  <description>jQuery JavaScript library -- css images</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/jpicker</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery color picker JavaScript library</description>
+</directory>
+<directory dist='default'>
+  <protetionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/jpicker/js</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery color picker JavaScript library javascript files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/jpicker/css</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery color picker JavaScript library CSS files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/jpicker/images</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Jquery color picker javascript library image files</description>
+</directory>
+
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet directory and popups</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet classes</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/HotEqn</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet HotEqn classes and jar</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/Display</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet display</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/lang</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet languages</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/formats</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet classes formats (LaTeX, Maxima, etc)</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
@@ -722,12 +862,6 @@ are viewable over the world-wide web</de
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/lonLCDfont</targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>LCD font for remote control</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonDomLogos</targetdir>
   <categoryname>server readonly</categoryname>
   <description>Logos for LON-CAPA domains</description>
@@ -746,13 +880,6 @@ are viewable over the world-wide web</de
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/res/adm/pages/bookmarkmenu
-  </targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>bookmark user interface code</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages/annotations
   </targetdir>
   <categoryname>server readonly</categoryname>
@@ -770,6 +897,7 @@ are viewable over the world-wide web</de
   <targetdir dist='default'>usr/lib/perl5/site_perl/5.005</targetdir>
   <targetdir dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0</targetdir>
   <targetdir dist='redhat8 redhat9'>usr/lib/perl5/site_perl/5.8.0</targetdir>
+  <targetdir dist='debian5'>usr/local/lib/perl/5.10.0</targetdir>
   <targetdir dist='debian'>usr/local/lib/perl/5.6.0</targetdir>
   <categoryname>standard</categoryname>
   <description>system perl tree (usually present on linux systems)
@@ -852,7 +980,7 @@ each list element consists of only two s
 <file>
 <source>loncom/loncapa.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa.conf</target>
-<target dist='sles10'>etc/apache2/loncapa.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa.conf</target>
 <categoryname>conf</categoryname>
 <description>
 <p>
@@ -892,10 +1020,10 @@ MySQL database</td></tr>
 </table>
 </note>
 </file>
-<file>
+<file type="postaboutversion">
 <source>loncom/loncapa_apache.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa_apache.conf</target>
-<target dist='sles10'>etc/apache2/loncapa_apache.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa_apache.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 The goal of this file is to implement all LON-CAPA specific
@@ -915,7 +1043,7 @@ the www@localhost MySQL password, and br
 <file>
 <source>loncom/startup.pl</source>
 <target dist='default'>etc/httpd/conf/startup.pl</target>
-<target dist='sles10'>etc/apache2/startup.pl</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/startup.pl</target>
 <categoryname>static conf</categoryname>
 <description>
 This file provides initializations for perl handlers.  It adjusts what
@@ -924,6 +1052,49 @@ well as causing the Apache module to be
 <tt>startup.pl</tt> is invoked by <tt>loncapa_apache.conf</tt>.
 </description>
 </file>
+<link>
+<linkto>etc/apache2</linkto>
+<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>
+etc/apache2/conf
+</target>
+<categoryname>symbolic link</categoryname>
+<description>
+symbolic link to directory /etc/apache2 from /etc/apache2/conf
+</description>
+</link>
+<file>
+<source>loncom/rewrites/loncapa_rewrite_off.conf</source>
+<target dist='default'>etc/httpd/conf/loncapa_rewrite.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa_rewrite.conf</target>
+<categoryname>conf</categoryname>
+<description>
+Default rewrite file. 
+Default is to disable rewriting of external requests for http:// to https:// 
+by setting: RewriteEngine off
+</description>
+</file>
+<file>
+<source>loncom/rewrites/loncapa_rewrite_on.conf</source>
+<target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_on.conf</target>
+<target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_on.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/rewrites/loncapa_rewrite_on.conf</target>
+<categoryname>static conf</categoryname>
+<description>
+File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to enable rewriting of
+external requests for http:// to https:// 
+</description>
+</file>
+<file>
+<source>loncom/rewrites/loncapa_rewrite_off.conf</source>
+<target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_off.conf</target>
+<target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_off.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/rewrites/loncapa_rewrite_off.conf</target>
+<categoryname>static conf</categoryname>
+<description>
+File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to disable rewriting of
+external requests for http:// to https:// 
+</description>
+</file>
 <file>
 <source>loncom/thesaurus/thesaurus.db</source>
 <target dist='default'>home/httpd/lonTabs/thesaurus.db</target>
@@ -1046,6 +1217,22 @@ utility cgi script to view status of per
   </description>
 </file>
 <file>
+  <source>loncom/lonmap.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmap.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides a module to read course files into hashes.
+  </description>
+</file>
+<file>
+  <source>loncom/cgi/lonauthcgi.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonauthcgi.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides routines used in authorization of server status CGI scripts 
+  </description>
+</file>
+<file>
 <source>loncom/cgi/graph.png</source>
 <target dist='default'>home/httpd/cgi-bin/graph.png</target>
 <categoryname>script</categoryname>
@@ -1108,6 +1295,21 @@ Alias /prtspool/ /home/httpd/prtspool/
 as well as a /home/httpd/prtspool directory.
 </note>
 </file>
+
+<file>
+  <source>loncom/interface/multidownload.pl</source>
+  <target dist='default'>home/httpd/cgi-bin/multidownload.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+cgi script to generate a zip file of all student submissions
+  </description>
+  <note>
+Depends on srm.conf entry:
+Alias /zipspool/ /home/httpd/zipspool/
+as well as a /home/httpd/zipspool directory.
+  </note>
+</file>
+
 <file>
 <source>loncom/cgi/metadata_keywords.pl</source>
 <target dist='default'>home/httpd/cgi-bin/metadata_keywords.pl</target>
@@ -1186,188 +1388,6 @@ Meta file for generic resource for score
 </description>
 </file>
 <fileglob>
-<glob>*.js</glob>
-<sourcedir>loncom/html/htmlarea/</sourcedir>
-<targetdir dist='default'>
-home/httpd/html/htmlarea/</targetdir>
-<categoryname>interface file</categoryname>
-<description>
-Files belonging to HTMLArea.
-</description>
-<filenames>
-dialog.js;
-htmlarea.js;
-popupdiv.js;
-popupwin.js;
-license.txt
-</filenames>
-</fileglob>
-<file>
-<source>loncom/html/htmlarea/htmlarea.css</source>
-<target dist='default'>home/httpd/html/htmlarea/htmlarea.css</target>
-<categoryname>interface file</categoryname>
-<description>
-Stylesheet for HTMLArea
-</description>
-</file>
-<file>
-<source>loncom/html/htmlarea/plugins/FullPage/full-page.js</source>
-<target dist='default'>home/httpd/html/htmlarea/plugins/FullPage/full-page.js</target>
-<categoryname>interface file</categoryname>
-<description>
-FullPage plugin for HTMLArea
-</description>
-</file>
-<fileglob>
-<glob>*.js</glob>
-<sourcedir>loncom/html/htmlarea/plugins/FullPage/lang/</sourcedir>
-<targetdir dist='default'>
-home/httpd/html/htmlarea/plugins/FullPage/lang/</targetdir>
-<categoryname>interface file</categoryname>
-<description>
-Language files belonging to FullPage plugin for HTMLArea.
-</description>
-<filenames>
-en.js;
-ro.js;
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.gif</glob>
-<sourcedir>loncom/html/htmlarea/plugins/FullPage/img/</sourcedir>
-<targetdir dist='default'>
-home/httpd/html/htmlarea/plugins/FullPage/img/</targetdir>
-<categoryname>interface file</categoryname>
-<description>
-Image files belonging to FullPage plugin for HTMLArea.
-</description>
-<filenames>
-docprop.gif;
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.html</glob>
-<sourcedir>loncom/html/htmlarea/plugins/FullPage/popups/</sourcedir>
-<targetdir dist='default'>
-home/httpd/html/htmlarea/plugins/FullPage/popups/</targetdir>
-<categoryname>interface file</categoryname>
-<description>
-Popup files belonging to FullPage plugin for HTMLArea.
-</description>
-<filenames>
-docprop.html;
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.js</glob>
-<sourcedir>loncom/html/htmlarea/lang/</sourcedir>
-<targetdir dist='default'>
-home/httpd/html/htmlarea/lang/</targetdir>
-<categoryname>interface file</categoryname>
-<description>
-Files belonging to HTMLArea.
-</description>
-<filenames>
-b5.js;
-de.js;
-fi.js;
-it.js;
-nl.js;
-ro.js;
-vn.js;
-en.js;
-fr.js;
-ja-utf8.js;
-pl.js;
-ru.js;
-da.js;
-es.js;
-gb.js;
-nb.js;
-pt_br.js;
-se.js;
-he.js;
-hu.js;
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.*</glob>
-<sourcedir>loncom/html/htmlarea/popups/</sourcedir>
-<targetdir dist='default'>
-home/httpd/html/htmlarea/popups/</targetdir>
-<categoryname>interface file</categoryname>
-<description>
-Files belonging to HTMLArea.
-</description>
-<filenames>
-about.html;
-insert_image.html;
-old_insert_image.html;
-blank.html;
-editor_help.html;
-insert_table.html;
-custom2.html;
-fullscreen.html;
-old-fullscreen.html;
-select_color.html;
-popup.js;
-link.html;
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.gif</glob>
-<sourcedir>loncom/html/htmlarea/images/</sourcedir>
-<targetdir dist='default'>
-home/httpd/html/htmlarea/images/</targetdir>
-<categoryname>interface file</categoryname>
-<description>
-Files belonging to HTMLArea.
-</description>
-<filenames>
-ed_left_to_right.gif;
-ed_right_to_left.gif;
-ed_save.gif;
-ed_delete.gif;
-ed_link.gif;
-ed_about.gif;
-ed_format_bold.gif;
-ed_list_bullet.gif;
-ed_align_center.gif;
-ed_format_italic.gif;
-ed_list_num.gif;
-ed_align_justify.gif;
-ed_format_strike.gif;
-ed_paste.gif;
-ed_align_left.gif;
-ed_format_sub.gif;
-ed_redo.gif;
-ed_align_right.gif;
-ed_format_sup.gif;
-ed_show_border.gif;
-ed_blank.gif;
-ed_format_underline.gif;
-ed_splitcel.gif;
-ed_charmap.gif;
-ed_help.gif;
-ed_undo.gif;
-ed_color_bg.gif;
-ed_hr.gif;
-fullscreen_maximize.gif;
-ed_color_fg.gif;
-ed_html.gif;
-fullscreen_minimize.gif;
-ed_copy.gif;
-ed_image.gif;
-insert_table.gif;
-ed_custom.gif;
-ed_indent_less.gif;
-ed_cut.gif;
-ed_indent_more.gif;
-ed_math.gif;
-ed_math_eqn.gif;
-</filenames>
-</fileglob>
-<fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/homework/templates/</sourcedir>
 <targetdir dist='default'>
@@ -1377,31 +1397,78 @@ home/httpd/html/res/adm/includes/templat
 Template files for generating new resources.
 </description>
 <filenames>
+answerdependent.problem;
+answerdependent.problem.meta;
 blank.library;
 blank.library.meta;
 blank.problem;
 blank.problem.meta;
+blank.task;
+blank.task.meta;
+dynamicgraph.problem;
+dynamicgraph.problem.meta;
+extreme.problem;
+extreme.problem.meta;
+simple.task;
+simple.task.meta;
+multiple_instance.task;
+multiple_instance.task.meta;
+MultipleAnswerEither.problem;
+MultipleAnswerEither.problem.meta;
+MultipleAnswerUnordered.problem;
+MultipleAnswerUnordered.problem.meta;
+optional_criteria.task;
+optional_criteria.task.meta;
 ClickImageExample.problem;
 ClickImageExample.problem.meta;
+custom_equation.problem;
+custom_equation.problem.meta;
+customhints.problem;
+customhints.problem.meta;
+custompartial.problem;
+custompartial.problem.meta;
 CustomResponse.problem;
 CustomResponse.problem.meta;
+customunit.problem;
+customunit.problem.meta;
 Essay.problem;
 Essay.problem.meta;
 examupload.problem;
 examupload.problem.meta;
+functionplotone.problem;
+functionplotone.problem.meta;
+functionplottwo.problem;
+functionplottwo.problem.meta;
+functionplotback.problem;
+functionplotback.problem.meta;
+functionplotvector.problem;
+functionplotvector.problem.meta;
+HintFormula.problem;
+HintFormula.problem.meta;
+HintMathResponse.problem;
+HintMathResponse.problem.meta;
 man1.jpg;
 man1.jpg.meta;
 numerical.problem;
 numerical.problem.meta;
+numPrePro.problem;
+numPrePro.problem.meta;
 Plot.problem.meta;
 Plot_curve.problem;
 Plot_curve.problem.meta;
 Plot_data.problem;
 Plot_data.problem.meta;
+Rnumerical.problem;
+Rnumerical.problem.meta;
 RadioResponse.problem;
 RadioResponse.problem.meta;
 RandomLabelExample.problem;
 RandomLabelExample.problem.meta;
+randomvalueradio.problem;
+randomvalueradio.problem.meta;
+sampleexternal.problem;
+sampleexternal.problem.meta;
+sampleexternal.pl;
 SelectFromOptions-4ConceptGoups.problem;
 SelectFromOptions-4ConceptGoups.problem.meta;
 SelectFromOptions-5ConceptGoups.problem;
@@ -1419,28 +1486,42 @@ script.library;
 script.library.meta;
 SimpleFormula.problem;
 SimpleFormula.problem.meta;
+SimpleFormulaCAS.problem;
+SimpleFormulaCAS.problem.meta;
 StringResponse.problem;
 StringResponse.problem.meta;
+stringPrePro.problem;
+stringPrePro.problem.meta;
 SimpleMatching.problem;
 SimpleMatching.problem.meta;
+SimpleMathResponse.problem;
+SimpleMathResponse.problem.meta;
+SimpleMathResponseR.problem;
+SimpleMathResponseR.problem.meta;
 SimpleRank.problem;
 SimpleRank.problem.meta;
 SimpleTrueFalse.problem;
 SimpleTrueFalse.problem.meta;
 organic.problem;
 organic.problem.meta;
+organic_hint.problem;
+organic_hint.problem.meta;
 reaction.problem;
-reaction.problem.meta
+reaction.problem.meta;
+reaction_hint.problem;
+reaction_hint.problem.meta
 </filenames>
 </fileglob>
+
 <file>
-<source>loncom/homework/insertlist.tab</source>
-<target dist='default'>home/httpd/lonTabs/insertlist.tab</target>
-<categoryname>static conf</categoryname>
-<description>
+  <source>loncom/homework/insertlist.xml</source>
+  <target dist='default'>home/httpd/lonTabs/insertlist.xml</target>
+  <categoryname>static conf</categoryname>
+  <description>
 Describes what tags are allowed inside other tags.
-</description>
+  </description>
 </file>
+
 <file>
 <source>CAPA/JavaTools/GLabel.class</source>
 <target dist='default'>home/httpd/html/res/adm/includes/GLabel.class
@@ -1503,26 +1584,74 @@ and privileges available in the network
 <target dist='default'>home/httpd/lonTabs/managers.tab</target>
 <categoryname>static conf</categoryname>
 <description>
-List of machines allowed to pass along updates to hosts.tab and domain.tab
+List of machines allowed to pass along updates to dns_hosts.tab and dns_domain.tab
 </description>
 </file>
-<file type="private">
-<source>loncom/hosts.tab</source>
-<target dist='default'>home/httpd/lonTabs/hosts.tab</target>
-<categoryname>www static conf</categoryname>
+<file>
+<source>loncom/misc/releaseslist.xml</source>
+<target dist='default'>home/httpd/lonTabs/releaseslist.xml</target>
+<categoryname>static conf</categoryname>
 <description>
-List of all machines in the LON-CAPA network.  Relates <tt>lonHostID</tt> to
-<tt>lonDefDomain</tt> and <u>IP address</u>.
+XML specification of LON-CAPA version required for certain parameters,
+response types and course containers. Used to determine if a course
+needs a minimum LON-CAPA version to function correctly.   
 </description>
 </file>
+
 <file type="private">
-<source>loncom/domain.tab</source>
-<target dist='default'>home/httpd/lonTabs/domain.tab</target>
-<categoryname>www static conf</categoryname>
-<description>
-List of all domains in the LON-CAPA network. Lists the name name of the domain and any default authentication.
-</description>
+  <source>loncom/hosts.tab</source>
+  <target dist='default'>home/httpd/lonTabs/hosts.tab</target>
+  <categoryname>www static conf</categoryname>
+  <description>
+List of Machines in the lon-capa network.
+  </description>
 </file>
+<file type="private">
+  <source>loncom/domain.tab</source>
+  <target dist='default'>home/httpd/lonTabs/domain.tab</target>
+  <categoryname>www static conf</categoryname>
+  <description>
+List of domains in the LON-CAPA network.
+Lists the name name of the domain and any multiple config options.
+  </description>
+</file>
+
+<file type="private">
+  <source>loncom/dns_hosts.tab</source>
+  <target dist='default'>home/httpd/lonTabs/dns_hosts.tab</target>
+  <categoryname>www static conf</categoryname>
+  <description>
+List of all machines in the lon-capa network that is served up by the DNS mechanism.
+  </description>
+</file>
+<file type="private">
+  <source>loncom/dns_domain.tab</source>
+  <target dist='default'>home/httpd/lonTabs/dns_domain.tab</target>
+  <categoryname>www static conf</categoryname>
+  <description>
+List of all domains in the LON-CAPA network that is served up by the DNS mechanism.
+  </description>
+</file>
+
+<file>
+  <source>loncom/loncaparevs.tab</source>
+  <target dist='default'>home/httpd/lonTabs/loncaparevs.tab</target>
+  <categoryname>www conf</categoryname>
+  <description>
+File holds LON-CAPA version installed on all servers in the LON-CAPA network. Updated
+ by loncron. 
+  </description>
+</file>
+
+<file>
+  <source>loncom/serverhomeIDs.tab</source>
+  <target dist='default'>home/httpd/lonTabs/serverhomeIDs.tab</target>
+  <categoryname>www conf</categoryname>
+  <description>
+File holds paired data -- hostname:lonHostID for all servers in the LON-CAPA network (useful for determining which domain should control server settings for a multi-domain server). Updated by loncron.
+  </description>
+</file>
+
 <file>
 <source>loncom/spare.tab</source>
 <target dist='default'>home/httpd/lonTabs/spare.tab</target>
@@ -1620,6 +1749,15 @@ Batch script for removing files not acce
 </description>
 </file>
 <file>
+<source>loncom/misc/refresh_courseids_db.pl</source>
+<target dist='default'>home/httpd/perl/refresh_courseids_db.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for refreshing course information in aggregating GDBM 
+file: nohist_courseids.db found in /home/httpd/lonUsers on library servers.
+</description>
+</file>
+<file>
 <source>loncom/debugging_tools/seed_accesscount.pl</source>
 <target dist='default'>home/httpd/perl/seed_accesscount.pl</target>
 <categoryname>script</categoryname>
@@ -1646,14 +1784,6 @@ propagate the ids in ids.db to all cours
   </description>
 </file>
 <file>
-<source>loncom/lonhttpd</source>
-<target dist='default'>home/httpd/perl/lonhttpd</target>
-<categoryname>script</categoryname>
-<description>
-Small fry httpd on port 8080
-</description>
-</file>
-<file>
 <source>loncom/lonmemcached</source>
 <target dist='default'>home/httpd/perl/lonmemcached</target>
 <categoryname>script</categoryname>
@@ -1670,6 +1800,14 @@ small script to handle the start up of t
   </description>
 </file>
 <file>
+  <source>loncom/lonr</source>
+  <target dist='default'>home/httpd/perl/lonr</target>
+  <categoryname>script</categoryname>
+  <description>
+    manages the existance and talking to the R processes
+  </description>
+</file>
+<file>
     <source>loncom/request_ssl_key.sh</source>
     <target dist='default'>home/httpd/lonCerts/request_ssl_key.sh</target>
     <categoryname>script</categoryname>
@@ -1678,42 +1816,6 @@ small script to handle the start up of t
     </description>
 </file>
 <file>
-<source>loncom/lonc</source>
-<target dist='default'>home/httpd/perl/lonc</target>
-<categoryname>script</categoryname>
-<description>
-proxy server
-</description>
-</file>
-<file>
-<source>doc/man/lonc.1</source>
-<target dist='default'>usr/man/man1/lonc.1</target>
-<categoryname>doc</categoryname>
-<description>man page for lonc</description>
-<build trigger='always run'>
-loncom/build/pod2man.sh ../lonc &gt; ../../doc/man/lonc.1 &amp;&amp; \
-echo 'manifying lonc'
-</build>
-<status>works/unverified</status>
-<dependencies>
-../../loncom/lonc
-</dependencies>
-</file>
-<file>
-<source>doc/scripts/lonc.html</source>
-<target dist='default'>home/httpd/html/adm/help/scripts/lonc.html</target>
-<categoryname>doc</categoryname>
-<description>POD-derived page for lonc</description>
-<build trigger='always run'>
-loncom/build/pod2html.sh ../lonc &gt; ../../doc/scripts/lonc.html &amp;&amp; \
-echo 'pod2html lonc'
-</build>
-<status>works/unverified</status>
-<dependencies>
-../../loncom/lonc
-</dependencies>
-</file>
-<file>
 <source>loncom/lond</source>
 <target dist='default'>home/httpd/perl/lond</target>
 <categoryname>script</categoryname>
@@ -1760,20 +1862,12 @@ echo 'pod2html lond'
 </dependencies>
 </file>
 <file>
-<source dist='default'>loncom/build/CHECKRPMS.default</source>
-<source dist='fedora1 fedora2 fedora3 fedora4 fedora5'>loncom/build/CHECKRPMS.fedora</source>
-<source dist='rhes4'>loncom/build/CHECKRPMS.rhel</source>
-<source dist='suse9.2 suse9.3 sles9'>loncom/build/CHECKRPMS.suse</source>
-<source dist='sles10'>loncom/build/CHECKRPMS.sles10</source>
+<source dist='default'>loncom/build/CHECKRPMS</source>
 <target dist='default'>home/httpd/cgi-bin/CHECKRPMS</target>
 <categoryname>script</categoryname>
 <description>CGI script that checks status of RPMs</description>
 <dependencies>
-loncom/build/CHECKRPMS.default;
-loncom/build/CHECKRPMS.fedora;
-loncom/build/CHECKRPMS.rhel;
-loncom/build/CHECKRPMS.suse;
-loncom/build/CHECKRPMS.sles10;
+loncom/build/CHECKRPMS
 </dependencies>
 </file>
 <file>
@@ -1789,6 +1883,21 @@ loncom/build/CHECKRPMS.sles10;
 <description>CGI script that shows users currently on machine</description>
 </file>
 <file>
+<source>loncom/cgi/listdomconfig.pl</source>
+<target dist='default'>home/httpd/cgi-bin/listdomconfig.pl</target>
+<categoryname>script</categoryname>
+<description>CGI script to display domain configuration as plain text.
+For use on the primary library server for a domain. Access control uses
+routines in lonauthcgi.pm
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/sampleexternal.pl</source>
+<target dist='default'>home/httpd/cgi-bin/sampleexternal.pl</target>
+<categoryname>script</categoryname>
+<description>Sample External Response Script</description>
+</file>
+<file>
 <source>loncom/loncron</source>
 <target dist='default'>home/httpd/perl/loncron</target>
 <categoryname>script</categoryname>
@@ -1847,15 +1956,6 @@ echo 'pod2html lonsql'
   <status>in progress</status>
 </file>
 <file>
-  <source>loncom/lonManage</source>
-  <target dist='default'>home/httpd/perl/lonManage</target>
-  <categoryname>script</categoryname>
-  <description>
-    Script to push changes to hosts.tab and domain.tab out to Lon-CAPA servers
-  </description>
-  <status>works/unverified</status>
-</file>
-<file>
   <source>loncom/apachereload</source>
   <target dist='default'>home/httpd/perl/apachereload</target>
   <categoryname>setuid script</categoryname>
@@ -1875,6 +1975,16 @@ user passwords.
 <status>being updated</status>
 </file>
 <file>
+<source>loncom/lcinstallfile</source>
+<target dist='default'>home/httpd/perl/lcinstallfile</target>
+<categoryname>setuid script</categoryname>
+<description>
+Set uid file that allows lond to install files in 
+lonTab which is normally owned by root.
+</description>
+<status>under construction</status>
+</file>
+<file>
 <source>loncom/pwchange</source>
 <target dist='default'>home/httpd/perl/pwchange</target>
 <categoryname>setuid script</categoryname>
@@ -1894,17 +2004,25 @@ new user.
 <status>being updated</status>
 </file>
 <file>
-<source>loncom/lchtmldir</source>
-<target dist='default'>home/httpd/perl/lchtmldir</target>
+<source>loncom/lciptables</source>
+<target dist='default'>home/httpd/perl/lciptables</target>
 <categoryname>setuid script</categoryname>
 <description>
-Manages the file system ramifications of adding author mode to a user. 
-If necessary a public_html diretory is added, permissions and ownership are
-set according to the user's authentication mode.
+Calls iptables to update firewall settings for port used for internal
+LON-CAPA communication to receive traffic from other servers in cluster
 </description>
 <status>New file</status>
 </file>
 <file>
+<source>loncom/lchttpdlogs</source>
+<target dist='default'>home/httpd/perl/lchttpdlogs</target>
+<categoryname>setuid script</categoryname>
+<description>
+script called by loncron to tail latest web server access and error logs.
+</description>
+<status>works/verified</status>
+</file>
+<file>
 <source>loncom/lcuserdel</source>
 <target dist='default'>home/httpd/perl/lcuserdel</target>
 <categoryname>setuid script</categoryname>
@@ -1958,7 +2076,7 @@ HTTPi webserver license
 HTTPi webserver readme 
 </description>
 </file>
-<file>
+<file type="postaboutversion">
 <source>loncom/license/about.html</source>
 <target dist='default'>home/httpd/html/adm/about.html</target>
 <categoryname>interface file</categoryname>
@@ -2043,6 +2161,14 @@ Different configs for scantron input fil
 </description>
 </file>
 <file>
+<source>loncom/homework/default_scantronformat.tab</source>
+<target dist='default'>home/httpd/lonTabs/default_scantronformat.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+Default configurations for scantron input files.
+</description>
+</file>
+<file>
 <source>loncom/publisher/packages.tab</source>
 <target dist='default'>home/httpd/lonTabs/packages.tab</target>
 <categoryname>static conf</categoryname>
@@ -2204,6 +2330,33 @@ Handler to pick a courseid from a list o
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonpickauthor.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickauthor.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for a DC to pick an author from a list of authors in the domain for an ad hoc CA role
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonpickresource.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickresource.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a resource or folder from the course contents
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonpickuser.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickuser.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a user from a directory search
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonbulletin.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonbulletin.pm</target>
 <categoryname>handler</categoryname>
@@ -2299,6 +2452,14 @@ buildMakeWrapper
 </dependencies>
 </file>
 <file>
+<source>loncom/html/adm/help/help.png</source>
+<target dist='default'>home/httpd/html/adm/help/help.png</target>
+<categoryname>interface file</categoryname>
+<description>
+help icon
+</description>
+</file>
+<file>
 <source>loncom/html/adm/help/abouthelp.html</source>
 <target dist='default'>home/httpd/html/adm/help/abouthelp.html</target>
 <categoryname>interface file</categoryname>
@@ -2337,6 +2498,17 @@ manual online, with a somewhat clumsy in
 <status>works/unverified</status>
 </file>
 <file>
+<source>doc/help/domain.manual.access.tex</source>
+<target dist='default'>home/httpd/html/adm/help/tex/domain.manual.access.tex
+</target>
+<categoryname>interface file</categoryname>
+<description>
+The pseudo-LaTeX file to allow people to read the domain coordination
+manual online, with a somewhat clumsy interface.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/help/author.manual.ps</source>
 <target dist='default'>home/httpd/html/adm/help/author.manual.ps</target>
 <categoryname>interface file</categoryname>
@@ -2359,7 +2531,7 @@ loncom/build/help_graphics_converter.pl
 <file>
 <source>doc/help/author.manual.pdf</source>
 <target dist='default'>home/httpd/html/adm/help/author.manual.pdf</target>
-<categoryname>handler</categoryname>
+<categoryname>pdf manual</categoryname>
 <description>
 The PDF Author's Manual
 </description>
@@ -2388,13 +2560,42 @@ loncom/build/help_graphics_converter.pl
 <file>
 <source>doc/help/course.manual.pdf</source>
 <target dist='default'>home/httpd/html/adm/help/course.manual.pdf</target>
-<categoryname>interface file</categoryname>
+<categoryname>pdf manual</categoryname>
 <description>
 The PDF Course Manual
 </description>
 <status>works/unverified</status>
 </file>
 <file>
+<source>doc/help/domain.manual.ps</source>
+<target dist='default'>home/httpd/html/adm/help/domain.manual.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+The postscript Domain Manual
+</description>
+<status>works/unverified</status>
+<dependencies>
+doc/help/domain.manual.texxml;
+doc/help/latexSplitter.py;
+doc/help/rebuildLabelHash.pl;
+doc/help/render.texxml.pl;
+doc/help/simpleEdit.py;
+doc/help/texxml2indextex.pl;
+doc/help/texxml2latex.pl;
+loncom/build/buildHelp.sh;
+loncom/build/help_graphics_converter.pl
+</dependencies>
+</file>
+<file>
+<source>doc/help/domain.manual.pdf</source>
+<target dist='default'>home/httpd/html/adm/help/domain.manual.pdf</target>
+<categoryname>pdf manual</categoryname>
+<description>
+The PDF Domain Manual
+</description>
+<status>works/unverified</status>
+</file>
+<file>
   <source>loncom/html/adm/help/ext_examples.html</source>
   <target dist='default'>home/httpd/html/adm/help/ext_examples.html</target>
   <categoryname>interface file</categoryname>
@@ -2442,6 +2643,15 @@ The PDF Course Manual
     Examples for using &EXT problem metadata
   </description>
 </file>
+<file>
+  <source>loncom/interface/lontemplate.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lontemplate.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler to create templates
+  </description>
+  <status>works/unverified</status>
+</file>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/html/adm/help/gif/</sourcedir>
@@ -2458,6 +2668,10 @@ Authoring_Dynamic_Plot_Axis_Tics_minor.g
 Authoring_Dynamic_Plot_Axis_Tics_nomirror.gif;
 Authoring_Dynamic_Plot_Axis_Tics_x_axis.gif;
 Authoring_Dynamic_Plot_Title_X_Y_Label.gif;
+BT_ScreenshotCriteria.gif;
+BT_ScreenshotQuestion.gif;
+BT_ScreenshotVariable.gif;
+flowchartBridgeTask.gif;
 Dynamic_Replication_Change.gif;
 Dynamic_Replication_Request.gif;
 Load_Balance_Example.gif;
@@ -2465,18 +2679,52 @@ LONCAPA_Network_Diagram2.gif;
 LONCAPA_Network_Diagram.gif;
 Map_Example.gif;
 Resource_Assembly.gif;
+aboutme.gif;
+addClickerInfoFile.gif;
+anno.gif;
+anot.gif;
+anot2.gif;
 authorRemote.gif;
+bchat.gif;
+blog.gif;
+catalog.gif;
+ccat.gif;
+chat.gif;
+chrt.gif;
+com.gif;
 constructionSpace.gif;
 constructionSpaceForPublishing.gif;
+coprplot.gif;
+cprv.gif;
 creatingANewCourse.gif;
 creatingNewProblemResource.gif;
+crsconf.gif;
+docs.gif;
+document-open.gif;
+document-properties.gif;
+dump.gif;
 dynamic_piecewise.gif;
 dynamic_piecewise2.gif;
 dynamic_plot.gif;
 dynamic_plot2.gif;
+edit-find-replace.gif;
+edit-redo.gif;
+edit-undo.gif;
+emblem-photos.gif;
+eval.gif;
+extres.gif;
+fdbk.gif;
+feedback.gif;
 formulaResponse.gif;
+FPRexamples.gif;
+fromfile.gif;
+grds.gif;
+grps.gif;
+list-add.gif;
 login.gif;
 lonhelpheader.gif;
+mail-message-new.gif;
+mail-reply-all.gif;
 mainCourseDocuments.gif;
 mapAdvancedEditorNew.gif;
 mapClickedStart.gif;
@@ -2492,19 +2740,65 @@ mapSecondWindowSecondResource.gif;
 mapSimpleEditor.gif;
 mapStraightened.gif;
 mapTwoResources.gif;
+messalog.gif;
+mngcu.gif;
+nav.gif;
+navigation.gif;
+network-workgroup.gif;
+new.gif;
 numericalResponse1.gif;
 numericalResponseEditor.gif;
 numericalResponseSlopeProblem.gif;
 numericalResponseVarInText.gif;
 optionResponseEditing.gif;
 optionResponseProblem.gif;
+page.gif;
+parm.gif;
+pgrd.gif;
+port.gif;
+pref.gif;
+preferences-desktop-font.gif;
+preferences-desktop-locale.gif;
+preferences-desktop-theme.gif;
+prt.gif;
 publishMetadata.gif;
 radioResponse2.gif;
 radioResponseHint.gif;
+rcrs.gif;
+res.gif;
+resversion.gif;
+roles.gif;
+rsrv.gif;
+scoreupfrm.gif;
+sctr.gif;
+self_enroll.gif;
+simple.gif;
+simpprob.gif;
 smallHelp.gif;
 spreadsheet_hierarchy.gif;
+sprs.gif;
+src.gif;
+stat.gif;
 stringResponseEditor.gif;
-studentInterface.gif
+studentInterface.gif;
+subdocs.gif;
+subtimpl.gif;
+survey_rep.gif;
+syllabus.gif;
+system-users.gif;
+turning.gif;
+uploadscores.gif;
+uplusr.gif;
+vbkm.gif;
+verify.gif;
+wishlist.gif;
+wishlist-link.gif;
+iclicker.gif;
+interwrite1.gif;
+interwrite2.gif;
+interwrite3.gif;
+interwrite4.gif;
+interwrite5.gif;
 </filenames>
 </fileglob>
 <fileglob>
@@ -2523,6 +2817,10 @@ Authoring_Dynamic_Plot_Axis_Tics_minor.e
 Authoring_Dynamic_Plot_Axis_Tics_nomirror.eps;
 Authoring_Dynamic_Plot_Axis_Tics_x_axis.eps;
 Authoring_Dynamic_Plot_Title_X_Y_Label.eps;
+BT_ScreenshotCriteria.eps;
+BT_ScreenshotQuestion.eps;
+BT_ScreenshotVariable.eps;
+flowchartBridgeTask.eps;
 Dynamic_Replication_Change.eps;
 Dynamic_Replication_Request.eps;
 Load_Balance_Example.eps;
@@ -2530,18 +2828,52 @@ LONCAPA_Network_Diagram2.eps;
 LONCAPA_Network_Diagram.eps;
 Map_Example.eps;
 Resource_Assembly.eps;
+aboutme.eps;
+addClickerInfoFile.eps;
+anno.eps;
+anot.eps;
+anot2.eps;
 authorRemote.eps;
+bchat.eps;
+blog.eps;
+catalog.eps;
+ccat.eps;
+chat.eps;
+chrt.eps;
+com.eps;
 constructionSpace.eps;
 constructionSpaceForPublishing.eps;
+coprplot.eps;
+cprv.eps;
 creatingANewCourse.eps;
 creatingNewProblemResource.eps;
+crsconf.eps;
+docs.eps;
+document-open.eps;
+document-properties.eps;
+dump.eps;
 dynamic_piecewise.eps;
 dynamic_piecewise2.eps;
 dynamic_plot.eps;
 dynamic_plot2.eps;
+edit-find-replace.eps;
+edit-redo.eps;
+edit-undo.eps;
+emblem-photos.eps;
+eval.eps;
+extres.eps;
+fdbk.eps;
+feedback.eps;
 formulaResponse.eps;
+FPRexamples.eps;
+fromfile.eps;
+grds.eps;
+grps.eps;
+list-add.eps;
 lonhelpheader.eps;
 login.eps;
+mail-message-new.eps;
+mail-reply-all.eps;
 mainCourseDocuments.eps;
 mapAdvancedEditorNew.eps;
 mapClickedStart.eps;
@@ -2557,19 +2889,64 @@ mapSecondWindowSecondResource.eps;
 mapSimpleEditor.eps;
 mapStraightened.eps;
 mapTwoResources.eps;
+messalog.eps;
+mngcu.eps;
+nav.eps;
+navigation.eps;
+network-workgroup.eps;
+new.eps;
 numericalResponse1.eps;
 numericalResponseEditor.eps;
 numericalResponseSlopeProblem.eps;
 numericalResponseVarInText.eps;
 optionResponseEditing.eps;
 optionResponseProblem.eps;
+page.eps;
+parm.eps;
+pgrd.eps;
+port.eps;
+preferences-desktop-font.eps;
+preferences-desktop-locale.eps;
+preferences-desktop-theme.eps;
+prt.eps;
 publishMetadata.eps;
 radioResponse2.eps;
 radioResponseHint.eps;
+rcrs.eps;
+res.eps;
+resversion.eps;
+roles.eps;
+rsrv.eps;
+scoreupfrm.eps;
+sctr.eps;
+self_enroll.eps;
+simple.eps;
+simpprob.eps;
 smallHelp.eps;
 spreadsheet_hierarchy.eps;
+sprs.eps;
+src.eps;
+stat.eps;
 stringResponseEditor.eps;
-studentInterface.eps
+studentInterface.eps;
+subdocs.eps;
+subtimpl.eps;
+survey_rep.eps;
+syllabus.eps;
+system-users.eps;
+turning.eps;
+uploadscores.eps;
+uplusr.eps;
+vbkm.eps;
+verify.eps;
+wishlist.eps;
+wishlist-link.eps;
+iclicker.eps;
+interwrite1.eps;
+interwrite2.eps;
+interwrite3.eps;
+interwrite4.eps;
+interwrite5.eps;
 </filenames>
 </fileglob>
 <fileglob>
@@ -2587,6 +2964,7 @@ About_Bombs.tex;
 About_Communication.tex;
 About_Developers_Manual.tex;
 About_Numerical_and_Formula_Response.tex;
+About_Symbs.tex;
 all_functions_table.tex;
 adaptive_hints.tex;
 Additional_Help.tex;
@@ -2619,7 +2997,7 @@ Authoring_ImageResponse.tex;
 Authoring_Input_Tags.tex;
 Authoring_Internal_Tags.tex;
 Authoring_Intro.tex;
-Authoring_M_Tag.tex;
+Authoring_Math_Editor.tex;
 Authoring_NumericalResponse.tex;
 Authoring_OptionResponse.tex;
 Authoring_Output_Tags.tex;
@@ -2638,7 +3016,24 @@ Author_Manual_Title_Page.tex;
 Author_Numerical_and_Formula.tex;
 Author_Remote_Control.tex;
 Batch_Creation.tex;
-Bookmarks.tex;
+BridgeTask_About.tex;
+BridgeTask_Conditions.tex;
+BridgeTask_Create.tex;
+BridgeTask_EditModeFinishing.tex;
+BridgeTask_EditModeIntroduction.tex;
+BridgeTask_EditModeQuestion.tex;
+BridgeTask_EditMode.tex;
+BridgeTask_EditModeVariable.tex;
+BridgeTask_Features.tex;
+BridgeTask_Intro.tex;
+BridgeTask_Portfolio.tex;
+BridgeTask_SetupResource.tex;
+BridgeTask_Slot.tex;
+BridgeTask_XMLFinishing.tex;
+BridgeTask_XMLHeader.tex;
+BridgeTask_XMLQuestions.tex;
+BridgeTask_XML.tex;
+BridgeTask_XMLVariable.tex;
 Browsing_Resources.tex;
 Bugzilla.tex;
 Caching.tex;
@@ -2659,6 +3054,7 @@ Chart_Sections.tex;
 Chart_Sequences.tex;
 Chart_Student_Data.tex;
 Chatting.tex;
+Clicker_Registration.tex;
 Coauthor.tex;
 Construction_Space_Overview.tex;
 Contextual_Help.tex;
@@ -2686,12 +3082,43 @@ Course_Feedback_Addresses.tex;
 Course_Homework_Performance_Overview.tex;
 Course_Manually_Grade_Problem.tex;
 Course_Manual_Title_Page.tex;
+Course_Manage_Group.tex;
 Course_Maximum_Collaborators.tex;
 Course_Message_Access.tex;
 Course_Modify_Student_Data.tex;
 Course_Parameter_Levels.tex;
 Course_Parameter_Table_Mode.tex;
+Course_Prefs_Bridgetasks.tex;
+Course_Prefs_Display.tex;
+Course_Prefs_Grading.tex;
+Course_Prefs_Printouts.tex;
+Course_Prefs_Classlists.tex;
+Course_Prefs_Feedback.tex;
+Course_Prefs_Language.tex;
+Course_Prefs_Spreadsheet.tex;
+Course_Prefs_Discussions.tex;
+Course_Prefs_General.tex;
+Course_Prefs_Other.tex;
 Course_Problem_Weight.tex;
+Course_Requests.tex;
+Course_Request_Access_End.tex;
+Course_Request_Access_Start.tex;
+Course_Request_Autoadd.tex;
+Course_Request_Autodrop.tex;
+Course_Request_Category.tex;
+Course_Request_Clone.tex;
+Course_Request_Crosslist.tex;
+Course_Request_Description.tex;
+Course_Request_Enroll_End.tex;
+Course_Request_Enroll_Start.tex;
+Course_Request_LCSection.tex;
+Course_Request_Personnel.tex;
+Course_Request_RegAccess_End.tex;
+Course_Request_RegAccess_Start.tex;
+Course_Request_Rolesection.tex;
+Course_Request_Sections.tex;
+Course_Roles.tex;
+Course_Self_Enrollment.tex;
 Course_Set_Start_End_Date.tex;
 Course_Setting_Parameters.tex;
 Course_Student_Grade_Override.tex;
@@ -2702,15 +3129,18 @@ Course_User_Parameter.tex;
 Course_View_Class_List.tex;
 Create_Course.tex;
 Creating_A_Course_Intro.tex;
+Creating_Domain_Coordinators.tex;
 Creating_Groups.tex;
 Creating_New_Content_Pages.tex;
 Creating_Online_Problems.tex;
 Creating_Radio_Response_Problems.tex;
 Custom_Response_Problems.tex;
+Deleting_Domain_Coordinators.tex;
 Developer_Manual_Title_Page.tex;
 Developer_Tutorial.tex;
 Distribute_Messages.tex;
 Docs_About_Bulletin_Board.tex;
+Docs_About_Group_Files.tex; 
 Docs_About_My_Personal_Info.tex;
 Docs_About_Simple_Page.tex;
 Docs_About_Syllabus.tex;
@@ -2740,10 +3170,40 @@ Docs_String_Response.tex;
 Docs_Supplemental.tex;
 Docs_Uploading_From_Harddrive.tex;
 Docs_Verify_Content.tex;
+Domain_Configuration_Auto_Creation.tex;
+Domain_Configuration_Auto_Enrollment.tex;
+Domain_Configuration_Auto_Updates.tex;
+Domain_Configuration_Cataloging_Courses.tex;
+Domain_Configuration_Color_Schemes.tex;
+Domain_Configuration_Contact_Info.tex;
+Domain_Configuration_Course_Defaults.tex;
+Domain_Configuration_InstDirectory_Search.tex;
+Domain_Configuration_LangTZAuth.tex;
+Domain_Configuration_Login_Page.tex;
+Domain_Configuration_Quotas.tex;
+Domain_Configuration_Request_Courses.tex;
+Domain_Configuration_Scantron_Format.tex;
+Domain_Configuration_Server_Status.tex;
+Domain_Configuration_SSL.tex;
+Domain_Configuration_User_Creation.tex;
+Domain_Configuration_User_Modification.tex;
+Domain_Configuration_User_Sessions.tex;
+Domain_Coordination_Intro.tex;
+Domain_Coordination_Overview.tex;
+Domain_Crontab_Entries.tex;
+Domain_Manual_Title_Page.tex;
 Due_Date.tex;
 Edit_Syllabus.tex;
 Error.tex;
+exam_answers.tex;
 exam_basics.tex;
+exam_build.tex;
+exam_disable_com.tex;
+exam_how_scored.tex;
+exam_parameters.tex;
+exam_printing.tex;
+exam_question_type.tex;
+exam_scoring.tex;
 Exploring_Your_Course.tex;
 Feedback_Author.tex;
 Feedback_Content.tex;
@@ -2752,12 +3212,25 @@ Feedback_Discussion.tex;
 Feedback_Policy.tex;
 Finding_Resources.tex;
 Foils.tex;
+Formula_Answers.tex;
+Formula_Editor.tex;
 Formula_Response_Adv_Intro.tex;
 Formula_Response_Example.tex;
 Formula_Response_Limitations.tex;
 Formula_Response_Problems.tex;
 Formula_Response_Sampling.tex;
 Formula_Tolerance.tex;
+Function_Plot_Response_Background_Plot.tex;
+Function_Plot_Response_Evaluation_Rule.tex;
+Function_Plot_Response_Rule_Set.tex;
+Function_Plot_Response_Elements.tex;
+Function_Plot_Response_Question.tex;
+Function_Plot_Response_Spline.tex;
+Function_Plot_Response_Custom_Rule.tex;
+Function_Plot_Response_Object.tex;
+Function_Plot_Response_Vector.tex;
+Function_Plot_Response_Vector_Rule.tex;
+Function_Plot_Response_Vector_Sum_Rule.tex;
 General_Intro.tex;
 Generation.tex;
 Grade_All.tex;
@@ -2780,11 +3253,25 @@ Guts_User_Dir.tex;
 Help.tex;
 Helper_Course_Initialization.tex;
 How_To_Edit_Existing_Content_Pages.tex;
+Institutional_Integration_Authentication.tex;
+Institutional_Integration_Course_Codes.tex;
+Institutional_Integration_Course_Requests.tex;
+Institutional_Integration_Format_Checks.tex;
+Institutional_Integration_Identity_Management.tex;
+Institutional_Integration_User_Categories.tex;
 Latex_Footer.tex;
 Latex_Header.tex;
 Leaving_Feedback.tex;
 Login_To_LON-CAPA.tex;
+Math_Response_Problems.tex;
+Maxima_Argument_Array.tex;
+Maxima_Libraries.tex;
 Metadata_Description.tex;
+Modify_Community_Owner.tex;
+Modify_Course_Defaultauth.tex;
+Modify_Course_Instcode.tex;
+Modify_Course_Owner.tex;
+Modify_Course_Quota.tex;
 Navigation_Screen.tex;
 Navmap_Host_Down.tex;
 NavMaps_MarkPosts_Read.tex;
@@ -2809,15 +3296,34 @@ Option_Response_Problem_Parts.tex;
 Option_Response_Problems.tex;
 Option_Response_Simple.tex;
 Other_Symbols.tex;
+Parameter_encrypturl.tex;
 Parameter_Helper.tex;
 Parameter_Manager.tex;
 Parameter_Overview.tex;
+Parameter_Set_Folder.tex;
 Part_Tag_Edit_Help.tex;
 Personal_Info_Page.tex;
 Physical_Units.tex;
+Portfolio_About.tex;
+Portfolio_AddFiles.tex;
+Portfolio_Catalog.tex;
+Portfolio_ChangeDirectory.tex;
+Portfolio_CreateDirectory.tex;
+Portfolio_DeleteFile.tex;
+Portfolio_FileAction.tex;
+Portfolio_FileList.tex;
+Portfolio_OpenFile.tex;
+Portfolio_RenameFile.tex;
+Portfolio_ShareFile_ChangeSetting.tex;
+Portfolio_ShareFile_Conditional.tex;
+Portfolio_ShareFile_SetAccess.tex;
+Portfolio_ShareFile_StopAccess.tex;
+Portfolio_ShareFile.tex;
 Prefs_About_Me.tex;
 Prefs_Forwarding.tex;
 Prefs_Language.tex;
+Prefs_Messages.tex;
+Prefs_Notification.tex;
 Prefs_Screen_Name_Nickname.tex;
 Print_Library.tex;
 Print_Options.tex;
@@ -2860,6 +3366,18 @@ Sequence_Page_Maps.tex;
 Sequence_Simple_Editor_Creation.tex;
 Sequence_Top-Level.tex;
 Significant_Figures.tex;
+Slot_About.tex;
+Slot_AddInterface.tex;
+Slot_ChoosingResources.tex;
+Slot_CommaDelimited.tex;
+Slot_EditDelete.tex;
+Slot_OptionalAttributes.tex;
+Slot_RequiredAttributes.tex;
+Slot_ResourceParameter.tex;
+Slot_RestrictAvailibility.tex;
+Slot_SelectingField.tex;
+Slot_SpecifyProctors.tex;
+Some_Items_Were_Not_Submitted.tex;
 Spreadsheet_About.tex;
 Spreadsheet_Calculation.tex;
 Spreadsheet_Calculation_Time.tex;
@@ -2907,6 +3425,7 @@ Tolerance.tex;
 Uploaded_Templates_PublicView.tex;
 Uploaded_Templates_TextBoxes.tex;
 Uploading_File_Options.tex;
+Using_Clickers.tex;
 Variable_Naming_Conventions.tex;
 Variables_in_Scripts.tex;
 Variables_in_the_Answer_Block.tex;
@@ -2917,6 +3436,7 @@ View_Critical_Messages.tex;
 View_recent_activity.tex;
 What_Is_LON-CAPA.tex;
 Why_LON-CAPA.tex;
+Wishlist.tex;
 </filenames>
 </fileglob>
 <fileglob>
@@ -2929,7 +3449,46 @@ home/httpd/html/adm/help/tex/de/</target
 German Tex files for the help system
 </description>
 <filenames>
+About_Bombs.tex;
+About_Communication.tex;
+Auth_Options.tex;
+Authoring_Math_Editor.tex;
+Contextual_Help.tex;
+Cascading_Parameters.tex;
+Course_Convert_To_CSV.tex;
+Course_Create_Class_List.tex;
+Course_Self_Enrollment.tex;
+Docs_About_Bulletin_Board.tex;
+Docs_About_Group_Files.tex;
+Docs_About_My_Personal_Info.tex;
+Docs_About_Simple_Page.tex;
+Docs_About_Syllabus.tex;
+Docs_Adding_Course_Doc.tex;
+Docs_Adding_Folders.tex;
+Docs_Editing_Templated_Pages.tex;
+Docs_Navigate_Content.tex;
+Docs_Score_Upload_Form.tex;
+Docs_Verify_Content.tex;
+Formula_Editor.tex;
+General_Intro.tex;
+Generation.tex;
+Metadata_Description.tex;
+Navigation_Screen.tex;
+Parameter_Overview.tex;
+Problem_Parameters.tex;
+Publishing_Copyright.tex;
+Publishing_Keywords.tex;
+Quick_Grades_Possibly_Correct.tex;
+Ranking_Problems.tex;
+Receipt.tex;
+Search_Advanced.tex;
+Search_Basic.tex;
+Student_Intro.tex;
+Syllabus_ExtLink.tex;
+Table_Mode.tex;
 Tries.tex;
+Uploaded_Templates_PublicView.tex;
+Uploaded_Templates_TextBoxes.tex;
 </filenames>
 </fileglob>
 <fileglob>
@@ -2972,7 +3531,7 @@ rebuild_label_hash.sh
 </dependencies>
 </file>
 <fileglob>
-  <glob>*</glob>
+  <glob>*.*</glob>
   <sourcedir>loncom/html/adm/fonts/</sourcedir>
   <targetdir dist='default'>home/httpd/html/adm/fonts/</targetdir>
   <categoryname>interface file</categoryname>
@@ -2980,17 +3539,58 @@ rebuild_label_hash.sh
     Fonts for convertjme.pl
   </description>
   <filenames>
-AUTHORS;
-BUGS;
 DejaVuSerif-Roman.ttf;
-LICENSE;
-NEWS;
-README;
+DejaVuSansMono-Bold.ttf;
+DejaVuSans.pfb;
+DejaVuSans.ttf;
+DejaVuSerif.pfb;
+DejaVuSerif.ttf;
 status.txt;
-unicover.txt
+unicover.txt;
   </filenames>
 </fileglob>
 <file>
+<source>loncom/html/adm/fonts/AUTHORS</source>
+<target dist='default'>home/httpd/html/adm/fonts/AUTHORS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/fonts/BUGS</source>
+<target dist='default'>home/httpd/html/adm/fonts/BUGS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/LICENSE</source>
+<target dist='default'>home/httpd/html/adm/fonts/LICENSE</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/NEWS</source>
+<target dist='default'>home/httpd/html/adm/fonts/NEWS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/README</source>
+<target dist='default'>home/httpd/html/adm/fonts/README</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
 <source>loncom/interface/lonstatistics.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonstatistics.pm</target>
 <categoryname>handler</categoryname>
@@ -3394,6 +3994,24 @@ Internal routines for creating a clone o
   <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonrequestcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrequestcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows submission of course requests by users with the right to request them 
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/loncoursequeueadmin.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncoursequeueadmin.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Common routines for administration of queues containing user-submitted requests - either for self-enrollment in an existing course, or for creation of a new course.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/loncreateuser.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncreateuser.pm</target>
 <categoryname>handler</categoryname>
@@ -3404,6 +4022,24 @@ them roles.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonuserutils.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonuserutils.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Common routines for user management including upload of lists of users in different formats, and to automatically create users (if they do not exist already), assign them roles within the privileges of the uploader to create/edit users. Also the ability to generate filtered lists of users with specific roles, as determined by the privileges of the viewer.   
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/selfenroll.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/selfenroll.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Users with accounts in LON-CAPA can self-enroll in courses between specified start and end dates, if the course has been configured to allow it, and the user's domain/institutional type satisfy the settings for self-enrollment in the course.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonhtmlcommon.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonhtmlcommon.pm</target>
 <categoryname>handler</categoryname>
@@ -3412,6 +4048,14 @@ Contains a set of functions that generat
 </description>
 </file>
 <file>
+<source>loncom/interface/lonhtmlgateway.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonhtmlgateway.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains a set of functions to properly parse and handle HTML input and output
+</description>
+</file>
+<file>
 <source>loncom/interface/lonspeller.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonspeller.pm</target>
 <categoryname>handler</categoryname>
@@ -3448,7 +4092,7 @@ Localization class for Locale::Maketext
 <sourcedir>loncom/localize/localize/</sourcedir>
 <targetdir dist='default'>
 home/httpd/lib/perl/Apache/localize/</targetdir>
-<categoryname>static conf</categoryname>
+<categoryname>lexicon file</categoryname>
 <description>
 Translation files.
 </description>
@@ -3463,6 +4107,7 @@ fa.pm;
 ar.pm;
 es.pm;
 x_chef.pm;
+zh.pm;
 </filenames>
 </fileglob>
 <file>
@@ -3536,6 +4181,13 @@ Coordinates the response to clicking an
 Handles tags associated with showing a list of options.</description>
 </file>
 <file>
+<source>loncom/homework/functionplotresponse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/functionplotresponse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handles tags associated with function plots using GeoGebra.</description>
+</file>
+<file>
 <source>loncom/homework/outputtags.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/outputtags.pm</target>
 <categoryname>handler</categoryname>
@@ -3575,6 +4227,42 @@ smiles.gif
 
 <fileglob>
   <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/geogebra/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/geogebra/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    Geogebra, for functionplotresponse
+  </description>
+  <filenames>
+geogebra_algos.jar;
+geogebra_algos.jar.pack.gz;
+geogebra_javascript.jar;
+geogebra_javascript.jar.pack.gz;
+geogebra_cas.jar;
+geogebra_export.jar.pack.gz;
+geogebra.jar;
+geogebra_main.jar.pack.gz;
+geogebra_cas.jar.pack.gz;
+geogebra_gui.jar;
+geogebra.jar.pack.gz;
+geogebra_properties.jar;
+geogebra_export.jar;
+geogebra_gui.jar.pack.gz;
+geogebra_main.jar;
+geogebra_properties.jar.pack.gz;
+geogebra_usb.jar;
+geogebra_usb.jar.pack.gz;
+jlatexmath.jar;
+jlatexmath.jar.pack.gz;
+jlm_cyrillic.jar;
+jlm_cyrillic.jar.pack.gz;
+jlm_greek.jar;
+jlm_greek.jar.pack.gz;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
   <sourcedir>loncom/html/adm/jmol/</sourcedir>
   <targetdir dist='default'>home/httpd/html/adm/jmol/</targetdir>
   <categoryname>interface file</categoryname>
@@ -3586,7 +4274,23 @@ COPYRIGHT.txt;
 JmolApplet.jar;
 Jmol.js;
 LICENSE.txt;
-README.txt
+README.txt;
+JmolApplet0_Core.jar;
+JmolApplet0_i18n.jar;
+JmolApplet0.jar;
+JmolApplet0_Jars.jar;
+JmolApplet0_Jvxl.jar;
+JmolApplet0_Main.jar;
+JmolApplet0_Popup.jar;
+JmolApplet0_Quantum.jar;
+JmolApplet0_ReadersCifPdb.jar;
+JmolApplet0_ReadersMolXyz.jar;
+JmolApplet0_ReadersMore.jar;
+JmolApplet0_ReadersXml.jar;
+JmolApplet0_ShapeBio.jar;
+JmolApplet0_ShapeSpecial.jar;
+JmolApplet0_Smiles.jar;
+JmolApplet0_Viewer.jar;
   </filenames>
 </fileglob>
 
@@ -3598,7 +4302,105 @@ README.txt
     Dynamically converts JME strings into either a png or ps file.
   </description>
 </file>
-
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+Latex.html;
+MathML.html;
+Maxima.html;
+MaximaPopup.html;
+EditMathPopup.html;
+FCKEditMathPopup.html
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/classes/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+AbsoluteLayout.jar;
+jep.jar;
+Project.jar;
+Config.xml;
+jdom.jar;
+swing-layout-1.0.jar;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/HotEqn/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/HotEqn/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+HotEqn.class;
+HotEqn.jar;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/classes/Display/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/Display/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+MainApplet.class;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/classes/formats/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/formats/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+ASCIIMathML.xml;
+Latex.xml;
+MathML.xml;
+MoodleTex.xml;
+Maple.xml;
+Maxima.xml;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/classes/lang/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/lang/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+ca.xml;
+cz.xml;
+en.xml;
+fr.xml;
+no.xml;
+pt-br.xml;
+sv.xml;
+de.xml;
+es.xml;
+nl.xml;
+pl.xml;
+ru.xml;
+  </filenames>
+</fileglob>
 <fileglob>
   <glob>*.*</glob>
   <sourcedir>loncom/html/adm/jsMath/</sourcedir>
@@ -3636,10 +4438,10 @@ jsMath-old-browsers.js;
   <target dist='default'>home/httpd/html/adm/jsMath/fonts/</target>
   <categoryname>script</categoryname>
   <description>
-    Dynamically converts JME strings into either a png or ps file.
+    Server side png fonts for use by jsMath
   </description>
   <installscript>
-commands /home/httpd/html/adm/jsMath
+commands /home/httpd/html/adm
   </installscript>
   <dependencies>
 loncom/html/adm/jsMath/commands;
@@ -3647,6 +4449,43 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
   </dependencies>
 </file>
 
+<file>
+  <source>loncom/html/adm/MathJax/mathjax-MathJax-v1.1a-0-g1697387.zip</source>
+  <target dist='default'>home/httpd/html/adm/MathJax</target>
+  <categoryname>script</categoryname>
+  <description>
+   MathJax for processing Tex, scripted installation that unzips installation file
+   in the appropriate location
+   NOTE: the commands file `mv`'s the files out of the original location provided
+   unzipping the file, making it look cleaner in the /home/.../adm/ directory
+  </description>
+  <installscript>
+commands /home/httpd/html/adm/MathJax
+  </installscript>
+  <dependencies>
+loncom/html/adm/MathJax/commands;
+loncom/html/adm/MathJax/mathjax-MathJax-v1.1a-0-g1697387.zip;
+  </dependencies>
+</file>
+
+<file>
+  <source>loncom/html/adm/ckeditor/ckeditor_3.6.2.tar.gz</source>
+  <target dist='default'>home/httpd/html/adm/ckeditor</target>
+  <categoryname>script</categoryname>
+  <description>
+   GUI HTML Editor, scripted installation decompress the tarball and
+   installs the loncapa config.js file
+  </description>
+  <installscript>
+commands /home/httpd/html/
+  </installscript>
+  <dependencies>
+loncom/html/adm/ckeditor/commands;
+loncom/html/adm/ckeditor/ckeditor_3.6.2.tar.gz;
+loncom/html/adm/ckeditor/loncapaconfig.js;
+  </dependencies>
+</file>
+
 <fileglob>
   <glob>*.*</glob>
   <sourcedir>loncom/html/adm/jsMath/extensions/</sourcedir>
@@ -3656,6 +4495,7 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
 Additional jsMath functionality that can be used when needed.
   </description>
   <filenames>
+AMSmath.js;
 AMSsymbols.js;
 HTML.js;
 bbox.js;
@@ -3688,6 +4528,7 @@ mimeTeX.js;
 noCache.js;
 noGlobal.js;
 noImageFonts.js;
+smallFonts.js;
 spriteImageFonts.js;
 tex2math.js;
   </filenames>
@@ -3712,6 +4553,107 @@ jsMath.js;
   </filenames>
 </fileglob>
 
+<fileglob>
+  <glob>*.js</glob>
+  <sourcedir>loncom/html/adm/jpicker/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jpicker/js/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+JQuery colorpicker javascript library
+  </description>
+  <filenames>
+    jpicker-1.1.6.min.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.css</glob>
+  <sourcedir>loncom/html/adm/jpicker/css/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jpicker/css/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+JQuery colorpicker javascript library css files
+  </description>
+  <filenames>
+    jpicker-1.1.6.min.css;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jpicker/images/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jpicker/images/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+JQuery color picker javascript library image files
+  </description>
+  <filenames>
+    AlphaBar.png;
+    bar-opacity.png;
+    Bars.png;
+    map-opacity.png;
+    mappoint.gif;
+    Maps.png;
+    NoColor.png;
+    picker.gif;
+    preview-opacity.png;
+    rangearrows.gif;
+  </filenames>
+</fileglob>
+
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/js/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/js/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.6.2, UI version 1.8.16
+  </description>
+  <filenames>
+	jquery-1.6.2.min.js;
+	jquery-ui-1.8.16.custom.min.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/css/smoothness/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.6.2, UI version 1.8.16 -- stylesheets
+  </description>
+  <filenames>
+	jquery-ui-1.8.16.custom.css;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/css/smoothness/images/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/images/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.6.2, UI version 1.8.16 -- images for css.
+  </description>
+  <filenames>
+  	ui-bg_flat_0_aaaaaa_40x100.png;
+	ui-bg_flat_75_ffffff_40x100.png;
+	ui-bg_glass_55_fbf9ee_1x400.png;
+	ui-bg_glass_65_ffffff_1x400.png;
+	ui-bg_glass_75_dadada_1x400.png;
+	ui-bg_glass_75_e6e6e6_1x400.png;
+	ui-bg_glass_95_fef1ec_1x400.png;
+	ui-bg_highlight-soft_75_cccccc_1x100.png;
+	ui-icons_2e83ff_256x240.png;
+	ui-icons_222222_256x240.png;
+	ui-icons_454545_256x240.png;
+	ui-icons_888888_256x240.png;
+	ui-icons_cd0a0a_256x240.png;
+  </filenames>
+</fileglob>
+
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -3781,6 +4723,15 @@ Handles navigational maps.
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/lonnavdisplay.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonnavdisplay.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Displays the nav map to the user
+  </description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/man/Apache__lonnavmaps.3</source>
 <target dist='default'>usr/man/man3/Apache::lonnavmaps.3</target>
 <categoryname>doc</categoryname>
@@ -3894,6 +4845,14 @@ Handles the production of printable file
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/entities.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/entities.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Converts html/xml entities to latex.
+</description>
+</file>
+<file>
   <source>loncom/metadata_database/LONCAPA/lonmetadata.pm</source>
   <target dist='default'>home/httpd/lib/perl/LONCAPA/lonmetadata.pm</target>
   <categoryname>system file</categoryname>
@@ -3911,6 +4870,24 @@ Handles a searchable catalogue.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonsearchcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsearchcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handles a searches inside courses/communities.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonindexcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonindexcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Course/community Indexer
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonmysql.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonmysql.pm</target>
 <categoryname>handler</categoryname>
@@ -3960,17 +4937,6 @@ Allows users with "mky" privileges to ge
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/londropadd.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/londropadd.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Allows course coordinators to upload courselists in different formats, and
-automatically create users (if they do not exist already), assign them the
-role of student in a course, and add them to the classlist.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/interface/lonviewclasslist.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonviewclasslist.pm</target>
 <categoryname>handler</categoryname>
@@ -4040,6 +5006,14 @@ The handler displays messages, has routi
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/courseprefs.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/courseprefs.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface for displaying/modifying course configuration
+  </description>
+</file>
+<file>
 <source>loncom/homework/hint.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/hint.pm</target>
 <categoryname>handler</categoryname>
@@ -4145,15 +5119,6 @@ echo 'pod2html lonparmset.pm'
 </dependencies>
 </file>
 <file>
-<source>loncom/publisher/lonconstruct.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonconstruct.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Page wrapper for handling construction space.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/publisher/lonpublisher.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpublisher.pm</target>
 <categoryname>handler</categoryname>
@@ -4199,7 +5164,7 @@ echo 'pod2html lonpublisher.pm'
 <target dist='default'>home/httpd/lib/perl/Apache/lonmenu.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Has routines which control the remote control.
+Has routines which control the inline menu.
 </description>
 <status>works/unverified</status>
 </file>
@@ -4213,15 +5178,6 @@ Displays the Main menu
   <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonremote.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonremote.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Handler to launch and collapse the remote control.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/interface/portfolio.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/portfolio.pm</target>
 <categoryname>handler</categoryname>
@@ -4265,15 +5221,6 @@ Creates horizontal menubar in advanced R
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/html/res/adm/pages/homeworkmenu.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/homeworkmenu.html</target>
-<categoryname>handler</categoryname>
-<description>
-Homework remote control.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/html/res/adm/pages/chatroom.html</source>
 <target dist='default'>home/httpd/html/res/adm/pages/chatroom.html</target>
 <categoryname>handler</categoryname>
@@ -4292,16 +5239,6 @@ This will take annotations and then plug
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/html/res/adm/pages/bookmarkmenu/admbookmarks.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/admbookmarks.pm</target>
-<categoryname>handler</categoryname>
-<description>
-This will take bookmarks and get/write/display them for the LON-CAPA user
-interface.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>rat/lonratsrv.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonratsrv.pm</target>
 <categoryname>handler</categoryname>
@@ -4445,6 +5382,24 @@ Tags Default Definition Module
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/lontable.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lontable.pm</target>
+<categoryname>server standard</categoryname>
+<description>
+Table object
+</description>
+<status>works</status>
+</file>
+<file>
+<source>loncom/xml/lonlatextable.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonlatextable.pm</target>
+<categoryname>server standard</categoryname>
+<description>
+Simple subset replacement for LaTeX::Table
+</description>
+<status>works</status>
+</file>
+<file>
 <source>loncom/xml/run.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/run.pm</target>
 <categoryname>handler</categoryname>
@@ -4587,6 +5542,15 @@ handles request to the CAPA homework pro
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/lonr.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonr.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    routines to simplify talking to the R client
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/Safe.pm</source>
 <target dist='default'>home/httpd/lib/perl/Safe.pm</target>
 <categoryname>handler</categoryname>
@@ -4687,6 +5651,13 @@ access handler for user uploaded files
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/lonwebdavacc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonwebdavacc.pm</target>
+<categoryname>handler</categoryname>
+<description>authorization for webDAV access to Author Spaces</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/lontrans.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontrans.pm</target>
 <categoryname>handler</categoryname>
@@ -4790,6 +5761,18 @@ loncom/build/pod2html.sh ../auth/loncacc
 </dependencies>
 </file>
 <file>
+<source>loncom/auth/lonstatusacc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstatusacc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+This module provides access to server status - Apache's server-status and
+files in the /home/httpd/html/lon-status directory, for which it is invoked 
+by the URL-related pattern syntax:
+<tt>LocationMatch "^/+lon-status/.*"</tt>.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/lonauth.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonauth.pm</target>
 <categoryname>handler</categoryname>
@@ -4811,6 +5794,20 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/blockedaccess.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/blockedaccess.pm</target>
+<categoryname>handler</categoryname>
+<description>Information about course-based blocking conditions for files with blocked access (currently affects portfolio files)</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/auth/lonipcheck.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonipcheck.pm</target>
+<categoryname>handler</categoryname>
+<description>Checks IP-based access control settings - disable subsequent PerlHandlers if client's IP is blocked</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/londatecheck.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londatecheck.pm</target>
 <categoryname>handler</categoryname>
@@ -4825,6 +5822,13 @@ loncom/build/pod2html.sh ../auth/loncacc
   <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/lonwebdavauth.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonwebdavauth.pm</target>
+<categoryname>handler</categoryname>
+<description>authenticate, set up session environment for webDAV</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/lonlogout.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonlogout.pm</target>
 <categoryname>handler</categoryname>
@@ -4835,7 +5839,7 @@ loncom/build/pod2html.sh ../auth/loncacc
   <source>loncom/auth/migrateuser.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/migrateuser.pm</target>
   <categoryname>handler</categoryname>
-  <description>auto logsin a remote user</description>
+  <description>auto logs in a remote user</description>
   <status>works/unverified</status>
 </file>
 <file>
@@ -4860,6 +5864,33 @@ loncom/build/pod2html.sh ../auth/loncacc
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/auth/lonshibauth.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonshibauth.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Redirect Shibboleth authentication to Single Sign On 
+               i.e., to: /adm/sso
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/lonshibacc.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonshibacc.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Authorization handler used to remove trailing @internet dom 
+               from Shibboleth authenticated username (e.g., @mit.edu).
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/html/adm/sso</source>
+  <target dist='default'>home/httpd/html/adm/sso</target>
+  <categoryname>interface file</categoryname>
+  <description>HTML page to redirect browser request for /adm/sso to
+  /adm/roles when Shibboleth SSO not in use (i.e., mod_shib not loaded).
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/lonnet/perl/lonrep.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonrep.pm</target>
 <categoryname>handler</categoryname>
@@ -5020,6 +6051,15 @@ loncom/build/pod2html.sh ../lonnet/perl/
 </dependencies>
 </file>
 <file>
+<source>loncom/lonnet/perl/londns.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/londns.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Domain information serving.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/html/index.html</source>
 <target dist='default'>home/httpd/html/index.html</target>
 <categoryname>interface file</categoryname>
@@ -5040,7 +6080,7 @@ loncom/build/pod2html.sh ../lonnet/perl/
 <file>
 <source>loncom/mime.types</source>
 <target dist='default'>etc/httpd/conf/mime.types</target>
-<target dist='sles10'>etc/apache2/mime.types</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/mime.types</target>
 <categoryname>www static conf</categoryname>
 <description>Expanded mime.types</description>
 </file>
@@ -5069,6 +6109,15 @@ which is restricted based on file or ser
 </description>
 </file>
 <file>
+<source>loncom/html/adm/nowebdav.html</source>
+<target dist='default'>home/httpd/html/adm/nowebdav.html</target>
+<categoryname>interface file</categoryname>
+<description>
+static html page that is shown when an attempt is made to access 
+an inaccessible path using webDAV.
+</description>
+</file>
+<file>
 <source>loncom/html/adm/help/searchcat.html</source>
 <target dist='default'>home/httpd/html/adm/help/searchcat.html</target>
 <categoryname>interface file</categoryname>
@@ -5140,6 +6189,14 @@ A blank page with very minimal HTML stru
 A blank page which calls drawwindow in its opener after being loaded.
 </description>
 </file>
+<file>
+<source>loncom/includepsheader.ps</source>
+<target dist='default'>home/httpd/lib/includepsheader.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+Extra header for dvips
+</description>
+</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>rat/images/</sourcedir>
@@ -5289,13 +6346,17 @@ logos and general widget icons
 <filenames>
 SMETE_white.gif;
 aboutlon.gif;
-aboutlon_pt.gif;
 aboutlon_de.gif;
+aboutlon_pt.gif;
 accessbutton.gif;
-accessbutton_pt.gif;
 accessbutton_de.gif;
+accessbutton_pt.gif;
 angry.gif;
+arrow.closed.gif;
+arrow.open.gif;
+arrow.up.gif;
 arrow_up.gif;
+avi.gif;
 baeh.gif;
 bigsmile.gif;
 branch.gif;
@@ -5318,6 +6379,23 @@ eps.gif;
 eps_big.gif;
 exam.gif;
 exam_big.gif;
+face-angel.png;
+face-angry.png;
+face-cool.png;
+face-crying.png;
+face-embarrassed.png;
+face-glasses.png;
+face-kiss.png;
+face-plain.png;
+face-quiet.png;
+face-raspberry.png;
+face-sad.png;
+face-sick.png;
+face-smile.png;
+face-smile-big.png;
+face-surprise.png;
+face-uncertain.png;
+face-wink.png;
 fillbottom.gif;
 fillleft.gif;
 fillright.gif;
@@ -5326,6 +6404,10 @@ folder_closed.gif;
 folder_opened.gif;
 folder_pointer_closed.gif;
 folder_pointer_opened.gif;
+food-cake.png;
+face-ninja.png;
+face-pirate.png;
+food-pizza.png;
 form.gif;
 form_big.gif;
 frowny.gif;
@@ -5333,6 +6415,7 @@ gif.gif;
 gif_big.gif;
 header.gif;
 header.png;
+heart.png;
 helpdesk.gif;
 helpgateway.gif;
 hrrm.gif;
@@ -5342,10 +6425,12 @@ html_big.gif;
 huh.gif;
 jar.gif;
 jar_big.gif;
+jpeg.gif;
 jpg.gif;
 jpg_big.gif;
 latex.gif;
 library.gif;
+lightGreyBG.png;
 lipsrsealed.gif;
 lite.gif;
 liteani.gif;
@@ -5358,6 +6443,7 @@ lonhelplogos.gif;
 lonhelptop.gif;
 lonlogo.gif;
 lonlogos.gif;
+lonUtilityIcon.png;
 lowerleft.gif;
 lowerright.gif;
 mailbkgrd.gif;
@@ -5369,6 +6455,8 @@ mov.gif;
 mov_big.gif;
 move_up.gif;
 move_down.gif;
+mpeg.gif;
+mpg.gif;
 navmap.correct.gif;
 navmap.partial.gif;
 navmap.ellipsis.gif;
@@ -5383,6 +6471,9 @@ navmap.folder.closed.gif;
 navmap.folder.open.nomanip.gif;
 navmap.folder.closed.nomanip.gif;
 neutral.gif;
+open.gif;
+opinion-agree.png;
+opinion-disagree.png;
 page.gif;
 page_big.gif;
 pdf.gif;
@@ -5396,6 +6487,10 @@ problem_big.gif;
 ps.gif;
 ps_big.gif;
 rolleyes.gif;
+rose.png;
+qt.gif;
+qti.gif;
+qtm.gif;
 quill.gif;
 quiz.gif;
 quiz_big.gif;
@@ -5406,18 +6501,24 @@ server.gif;
 server_big.gif;
 shocked.gif;
 smiley.gif;
+spreadsheet.gif;
 srvbad.gif;
 srvempty.gif;
 srvgood.gif;
 srvhalf.gif;
 srvnull.gif;
+stift.gif;
 survey.gif;
 survey_big.gif;
+tabbgleft.gif;
+tabbgright.gif;
 task.gif;
 task_big.gif;
 tex.gif;
 tex_big.gif;
 tth.gif;
+text.gif;
+transparent1x1.gif;
 txt.gif;
 txt_big.gif;
 unknown.gif;
@@ -5426,12 +6527,10 @@ upperleft.gif;
 upperright.gif;
 user.gif;
 user_big.gif;
-userauthentication.gif;
-userauthentication_pt.gif;
-userauthentication_de.gif;
 wav.gif;
 wav_big.gif;
 white_space_20_22.gif;
+whitespace_21.gif;
 whitespace1.gif;
 whitespace10.gif;
 whitespace2.gif;
@@ -5443,6 +6542,7 @@ whitespace7.gif;
 whitespace8.gif;
 whitespace9.gif;
 wink.gif;
+wmv.gif;
 xls.gif;
 xls_big.gif;
 xml.gif;
@@ -5466,12 +6566,17 @@ bomb.gif;
 smallFAQ.gif;
 smallBug.gif;
 cat_button.gif;
+cat_button.png;
 chat.gif;
 eval_button.gif;
+eval_button.png;
 feedback.gif;
 pprm_button.gif;
+pprm_button.png;
 pgrd_button.gif;
-subm_button.gif
+pgrd_button.png;
+subm_button.gif;
+subm_button.png;
 </filenames>
 </fileglob>
 <file>
@@ -5594,6 +6699,16 @@ entries.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/configuration/Firewall.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/Firewall.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Provides methods to open and close firewall ports used for  
+for socket-based communication between LON-CAPA servers
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/ConfigFileEdit.pm</source>
 <target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
 <categoryname>system file</categoryname>
@@ -5622,7 +6737,15 @@ modules/TexConvert/tthperl/commands
 <dependencies>
 commands;
 compiles/tth.so.i386;
-compiles/tth.so.x86_64
+compiles/tth.so.x86_64;
+compiles/tth.so.i386.perl.5.10;
+compiles/tth.so.x86_64.perl.5.10;
+compiles/tth.so.i386.perl.5.12;
+compiles/tth.so.x86_64.perl.5.12;
+compiles/tth.so.i386.perl.5.14;
+compiles/tth.so.x86_64.perl.5.14;
+compiles/tth.so.i386.debian5;
+compiles/tth.so.x86_64.debian5
 </dependencies>
 </file>
 <file>
@@ -5710,12 +6833,14 @@ loncom/cgi/mimeTeX/commands
 commands;
 gfuntype.c;
 gifsave.c;
+loncapanewcommands.h;
 mimetex.c;
 mimetex.h;
 mimetex.html;
 README;
 texfonts.h;
 LICENSE;
+VERSION;
 </dependencies>
 </file>
 <fileglob>
@@ -5809,6 +6934,22 @@ Functions are documented in CVS:loncapa/
   </description>
 </file>
 <file>
+  <source>loncom/homework/task_ie.css</source>
+  <target dist='default'>home/httpd/html/res/adm/includes/task_ie.css</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Style definitions for task display for IE 6 and earlier
+  </description>
+</file>
+<file>
+  <source>loncom/homework/task_ie7.css</source>
+  <target dist='default'>home/httpd/html/res/adm/includes/task_ie7.css</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Style definitions for task display for IE 7
+  </description>
+</file>
+<file>
   <source>loncom/homework/task_grading.js</source>
   <target dist='default'>home/httpd/html/res/adm/includes/task_grading.js</target>
   <categoryname>handler</categoryname>
@@ -5971,61 +7112,6 @@ tmcc.tab;
 </fileglob>
 <fileglob>
 <glob>*.gif</glob>
-<sourcedir>loncom/html/adm/lonLCDfont/</sourcedir>
-<targetdir dist='default'>home/httpd/html/adm/lonLCDfont/</targetdir>
-<categoryname>graphic file</categoryname>
-<description>LON-CAPA remote control LCD font</description>
-<filenames>
-0.gif;
-1.gif;
-2.gif;
-3.gif;
-4.gif;
-5.gif;
-6.gif;
-7.gif;
-8.gif;
-9.gif;
-a.gif;
-b.gif;
-c.gif;
-d.gif;
-e.gif;
-f.gif;
-g.gif;
-h.gif;
-i.gif;
-j.gif;
-k.gif;
-l.gif;
-m.gif;
-n.gif;
-o.gif;
-p.gif;
-q.gif;
-r.gif;
-s.gif;
-t.gif;
-u.gif;
-v.gif;
-w.gif;
-x.gif;
-y.gif;
-z.gif;
-ö.gif;
-ä.gif;
-ü.gif;
-ä.gif;
-ö.gif;
-ü.gif;
-colon.gif;
-hyphen.gif;
-slash.gif;
-space.gif;
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/pt/</sourcedir>
 <targetdir dist='default'>home/httpd/html/res/adm/pages/pt/</targetdir>
 <categoryname>graphic file</categoryname>
@@ -6070,83 +7156,202 @@ vbkm_pt.gif;
 <categoryname>graphic file</categoryname>
 <description>icons used for the entire LON-CAPA user interface</description>
 <filenames>
-anno.gif;
-anot.gif;
-back.gif;
-bchat.gif;
-bkm.gif;
-bl_step1.gif;
-bl_step2.gif;
-bl_step3.gif;
-bl_step4.gif;
-bl_step5.gif;
-bl_step6.gif;
-bl_step7.gif;
-bl_step8.gif;
-bl_step9.gif;
-brws.gif;
-catalog.gif;
-ccrs.gif;
 chat.gif;
-chrt.gif;
-clst.gif;
-com.gif;
-courses.gif;
-cprv.gif;
-cstr.gif;
-del.gif;
+close-all-folders.gif;
 dempty.gif;
-docs.gif;
-egrd.gif;
+edittoplevel.gif;
 empty.gif;
-enrl.gif;
-eval.gif;
-fdbk.gif;
 feedback.gif;
-forw.gif;
-grds.gif;
-grps.gif;
 group.gif;
 help.gif;
 info.gif;
-keys.gif;
 ledblink.gif;
 ledgreen.gif;
 ledoff.gif;
 ledon.gif;
-ledsend.gif;
-list.gif;
-logout.gif;
-mail.gif;
-mcrs.gif;
-mrk.gif;
-nav.gif;
-new.gif;
+mark-discussionentries-read.gif;
 next.gif;
 nothumb.gif;
-parm.gif;
-pgrd.gif;
-port.gif;
-pparm.gif;
-pref.gif;
-prev.gif;
-prt.gif;
-pub.gif;
+open-all-folders.gif;
+open-first-problem.gif;
 qempty.gif;
-reload.gif;
-remotebg.gif;
-res.gif;
-roles.gif;
-rtrv.gif;
-sbkm.gif;
-sctr.gif;
-spacer.gif;
-sprs.gif;
-src.gif;
-stat.gif;
-subm.gif;
-title.gif;
-vbkm.gif;
+show-all.gif;
+show-incomplete-problems.gif;
+star.gif;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.png</glob>
+<sourcedir>loncom/html/res/adm/pages/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>main menu graphical icons</description>
+<filenames>
+anno.png;
+bchat.png;
+ccat.png;
+ccrs.png;
+clst.png;
+conf.png;
+courses.png;
+crsconf.png;
+docs.png;
+editmap.png;
+eval.png;
+grds.png;
+grps.png;
+mail.png;
+new.png;
+pgrd.png;
+pref.png;
+roles.png;
+sprs.png;
+vbkm.png;
+anot.png;
+anot2.png;
+blog.png;
+chrt.png;
+cprv.png;
+del.png;
+egrd.png;
+fdbk.png;
+keys.png;
+list.png;
+mcrs.png;
+parm.png;
+port.png;
+prt.png;
+rcrs.png;
+rsrv.png;
+sbkm.png;
+src.png;
+srvr.png;
+subm.png;
+thumbsup.png;
+thumbsup_gray.png;
+thumbsup_novote.png;
+thumbsdown.png;
+thumbsdown_gray.png;
+thumbsdown_novote.png;
+back.png;
+catalog.png;
+com.png;
+cstr.png;
+enrl.png;
+forw.png;
+logout.png;
+nav.png;
+pcstr.png;
+pparm.png;
+pub.png;
+res.png;
+rtrv.png;
+sctr.png;
+stat.png;
+pdfupload.png;
+course_ini.png;
+dismath.png;
+feedback.png;
+mngcu.png;
+prob_ana.png;
+process-stop.png;
+role_hotlist.png;
+reload.png;
+self_enroll.png;
+survey_rep.png;
+subdocs.png;
+uplusr.png;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.png</glob>
+<sourcedir>loncom/html/res/adm/pages/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>graphical icons used in submenus</description>
+<filenames>
+aboutme.png;
+addClickerInfoFile.png;
+anonsurveythreshold.png;
+bubblesheet.png;
+ccatconf.png;
+chat.png;
+comblock.png;
+contact-new.png;
+coprplot.png;
+crsnew.png;
+dialog-information.png;
+document-open.png;
+document-properties.png;
+download_sub.png;
+dropbox.png;
+dump.png;
+edit-copy.png;
+edit-find-replace.png;
+edit-find.png;
+edit-mode-22x22.png;
+edit-redo.png;
+edit-select-all.png;
+edit-undo.png;
+emblem-photos.png;
+emblem-readonly.png;
+emblem-system.png;
+extres.png;
+folder-new.png;
+folder-new-22x22.png;
+format-justify-fill.png;
+fromfile.png;
+grade_PageFolder.png;
+grade_students.png;
+grading_table.png;
+groupportfolio.png;
+groupportfolioquota.png;
+grp_add.png;
+grp_settings.png;
+grp_tools.png;
+ims.png;
+imsexport.png;
+link-new-22x22.png;
+list-add.png;
+log.png;
+mail-message-new.png;
+mail-reply-all.png;
+mail-reply-sender.png;
+messalog.png;
+move-22x22.png;
+myaboutme.png;
+navigation.png;
+network-workgroup.png;
+page.png;
+preferences-desktop-font.png;
+preferences-desktop-locale.png;
+preferences-desktop-remote-desktop.png;
+preferences-desktop-theme.png;
+preferences-desktop-wallpaper.png;
+preferences-system-windows.png;
+receipt_number.png;
+recover.png;
+remotecontrol.png;
+resversion.png;
+save-22x22.png;
+scoreupfrm.png;
+selfenrl-queue.png;
+sequence.png;
+simple.png;
+simpprob.png;
+start-here.png;
+subtimpl.png;
+syllabus.png;
+symbs.png;
+system-lock-screen.png;
+system-users.png;
+ungrade_sub.png;
+uplcrs.png;
+uploadscores.png;
+verify.png;
+view-mode-22x22.png;
+wishlist.png;
+wishlist-link.png;
 </filenames>
 </fileglob>
 <file>
@@ -6158,14 +7363,6 @@ vbkm.gif;
 </description>
 </file>
 <file>
-<source>loncom/html/res/adm/pages/imgmaps.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/imgmaps.html</target>
-<categoryname>interface file</categoryname>
-<description>
-image maps for the LON-CAPA remote control
-</description>
-</file>
-<file>
 <source>loncom/html/res/adm/pages/index.html</source>
 <target dist='default'>home/httpd/html/res/adm/pages/index.html</target>
 <categoryname>interface file</categoryname>
@@ -6173,14 +7370,6 @@ image maps for the LON-CAPA remote contr
 welcoming page to the LON-CAPA system upon login
 </description>
 </file>
-<file>
-<source>loncom/html/res/adm/pages/menu.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/menu.html</target>
-<categoryname>interface file</categoryname>
-<description>
-renders the HTML (including image maps) for the LON-CAPA remote control
-</description>
-</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/indexericons/</sourcedir>
@@ -6283,56 +7472,6 @@ world2.gif
 </filenames>
 </fileglob>
 <fileglob>
-<glob>*.gif</glob>
-<sourcedir>loncom/html/res/adm/pages/bookmarkmenu/</sourcedir>
-<targetdir dist='default'>home/httpd/html/res/adm/pages/bookmarkmenu/
-</targetdir>
-<categoryname>graphic file</categoryname>
-<description>
-icons used for the bookmark portion of the LON-CAPA user interface
-</description>
-<filenames>
-folder_anim.gif;
-folder_close.gif;
-folder_drag.gif;
-folder_new.gif;
-folder_open.gif;
-folder_pointer_closed.gif;
-folder_pointer_opened.gif;
-folder_static.gif;
-folder_trash.gif;
-folder_trash_hover.gif;
-left_bar.gif;
-link.gif;
-link_anim.gif;
-link_drag.gif;
-ll_corner.gif;
-lower_bar.gif;
-lr_corner.gif;
-pix.gif;
-right_bar.gif;
-toolbar_bg.gif;
-ul_corner.gif;
-upper_bar.gif;
-ur_corner.gif
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.html</glob>
-<sourcedir>loncom/html/res/adm/pages/bookmarkmenu/</sourcedir>
-<targetdir dist='default'>home/httpd/html/res/adm/pages/bookmarkmenu/
-</targetdir>
-<categoryname>interface file</categoryname>
-<description>
-associated with the scheme of displaying bookmarks
-</description>
-<filenames>
-bookmarkmenu_toolbar.html;
-blank.html;
-closechildren.html
-</filenames>
-</fileglob>
-<fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/html/res/adm/pages/reactionresponse/</sourcedir>
 <targetdir dist='default'>home/httpd/html/res/adm/pages/reactionresponse/</targetdir>
@@ -6349,24 +7488,11 @@ reaction_window.html
 </filenames>
 </fileglob>
 <file>
-<source>loncom/html/res/adm/pages/bookmarkmenu/bookmarklib.js</source>
-<target dist='default'>
-home/httpd/html/res/adm/pages/bookmarkmenu/bookmarklib.js</target>
-<categoryname>interface file</categoryname>
-<description>
-javascript for handling client-side interactions with bookmark interface
-</description>
-</file>
-<file>
-<source dist='default'>loncom/build/CHECKRPMS.default</source>
-<source dist='fedora1 fedora2 fedora3 fedora4 fedora5'>loncom/build/CHECKRPMS.fedora</source>
-<source dist='rhes4'>loncom/build/CHECKRPMS.rhel</source>
-<source dist='suse9.2 suse9.3 sles9'>loncom/build/CHECKRPMS.suse</source>
-<source dist='sles10'>loncom/build/CHECKRPMS.sles10</source>
+<source dist='default'>loncom/build/CHECKRPMS</source>
 <target dist='default'>usr/local/loncapa/bin/CHECKRPMS</target>
 <categoryname>system script</categoryname>
 <description>
-manilla wrapper around check-rpms
+Checks if RPMs need updating with yum, you, rug, up2date or check-rpms depending on distribution.
 </description>
 <status>tested/documented/beta</status>
 </file>
@@ -6435,6 +7561,14 @@ preserve_local_loncapa_cron
   </dependencies>
 </file>
 <file>
+  <source>loncom/cron/loncapa</source>
+  <target dist='default'>home/httpd/lib/perl/loncapa_cron-std</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Back-up of standard loncapa cron file (the actual file in use: /etc/cron.d/loncapa may contain local modifications).
+  </description>
+</file>
+<file>
 <source>loncom/ntp/step-tickers</source>
 <target dist='default'>usr/local/loncapa/doc/conf_examples/ntp_step-tickers
 </target>
@@ -6467,14 +7601,15 @@ file that allows setuid password privile
 <file>
 <source>loncom/init.d/loncontrol</source>
 <target dist='default'>etc/rc.d/init.d/loncontrol</target>
-<target dist='suse9.2 suse9.3 sles9 sles10'>etc/init.d/loncontrol</target>
+<target dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/init.d/loncontrol</target>
 <categoryname>root script</categoryname>
 <description>
 Controls the launching/halting of lonc, lond, and lonsql processes.
 </description>
 </file>
 <link>
-<linkto>etc/rc.d/init.d/loncontrol</linkto>
+<linkto dist='default'>etc/rc.d/init.d/loncontrol</linkto>
+<linkto dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/init.d/loncontrol</linkto>
 <target dist='default'>
 etc/rc.d/rc0.d/K05loncontrol;
 etc/rc.d/rc1.d/K05loncontrol;
@@ -6484,10 +7619,63 @@ etc/rc.d/rc4.d/S95loncontrol;
 etc/rc.d/rc5.d/S95loncontrol;
 etc/rc.d/rc6.d/K05loncontrol
 </target>
+<target='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>
+etc/rc.d/rc0.d/K05loncontrol;
+etc/rc.d/rc1.d/K05loncontrol;
+etc/rc.d/rc2.d/K05loncontrol;
+etc/rc.d/rc3.d/S95loncontrol;
+etc/rc.d/rc5.d/S95loncontrol;
+etc/rc.d/rc6.d/K05loncontrol
+</target>
+<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>
+etc/rc0.d/K05loncontrol;
+etc/rc1.d/K05loncontrol;
+etc/rc2.d/S95loncontrol;
+etc/rc3.d/S95loncontrol;
+etc/rc4.d/S95loncontrol;
+etc/rc5.d/S95loncontrol;
+etc/rc6.d/K05loncontrol
+</target>
 <categoryname>symbolic link</categoryname>
 <description>
-symbolic links to /etc/rc.d/init.d/loncontrol for run-levels</description>
+symbolic links to /etc/rc.d/init.d/loncontrol (redhat/fedora) or /etc/init.d/loncontrol (suse/debian) for run-levels
+</description>
 </link>
+
+<file dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 sles9 sles10 sles11">
+  <source>loncom/init.d/loncontrol</source>
+  <target>etc/rc.d/</target>
+  <description>
+    setup loncontrol to run at boot
+  </description>
+  <installscript dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 sles9 sles10 sles11">
+-c 'chkconfig --del loncontrol;chkconfig loncontrol 35;chkconfig --list loncontrol'
+  </installscript>
+  <dependencies>
+loncom/init.d/loncontrol
+  </dependencies>
+</file>
+
+<file>
+  <source>doc/latex/utf8.def</source>
+  <target dist='default'>usr/local/loncapa/doc/utf8.def</target>
+  <target dist='rhes4'>usr/share/texmf/tex/latex/base/utf8.def</target>
+  <categoryname>system file</categoryname>
+  <description>
+   utf8 definitions for LaTeX
+  </description>
+</file>
+
+<file>
+  <source>doc/latex/utf8enc.dfu</source>
+  <target dist='default'>usr/local/loncapa/doc/utf8enc.dfu</target>
+  <target dist='rhes4'>usr/share/texmf/tex/latex/base/utf8enc.dfu</target>
+  <categoryname>system file</categoryname>
+  <description>
+   utf8 declarations for LaTeX
+  </description>
+</file>
+
 <file>
 <source>loncom/atalk/config</source>
 <target dist='default'>usr/local/loncapa/doc/conf_examples/config</target>
@@ -6535,7 +7723,39 @@ of users, and (b) to display e-mail of t
   <target dist='default'>home/httpd/lib/perl/Apache/lonsupportreq.pm</target>
   <categoryname>handler</categoryname>
   <description>
-    Handler to make it easy for users to send a request to te helpdesk
+    Handler to make it easy for users to send a request to the helpdesk
+  </description>
+</file>
+<file>
+  <source>loncom/interface/courseclassifier.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/courseclassifier.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Routines used in generation of dynamic Year, Semester, Departmemt and Course Number select boxes from institutional course codes.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/coursecatalog.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/coursecatalog.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Display catalog of courses with institutional codes, filtered by domain-specific categories (e.g., year, semester, department etc.).
+  </description>
+</file>
+<file>
+  <source>loncom/interface/resetpw.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/resetpw.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    A user with an internally authenticated account and a recorded e-mail address can use a two-step process to set a new password via a token sent to his/her e-mail address.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/createaccount.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/createaccount.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    An e-mail address can be used to create a LON-CAPA account via a two-step process employing a token sent to the e-mail address (the address will be the username). Alternatively, an institutional login can be used (after successful authentication) to create a corresponding LON-CAPA account, if one is missing.
   </description>
 </file>
 <file>
@@ -6544,7 +7764,40 @@ of users, and (b) to display e-mail of t
   <categoryname>handler</categoryname>
   <description>
     Interface to modifying a course's internal ENV values for automated
-    enrollement
+    enrollment
+  </description>
+</file>
+<file>
+  <source>loncom/interface/domainprefs.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/domainprefs.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface for modifying domain configuration
+  </description>
+</file>
+<file>
+  <source>loncom/interface/domainstatus.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/domainstatus.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for generation of a menu of links to server status utilities
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonconfigsettings.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonconfigsettings.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Common routines for generating menus to set default configuration settings -  
+   for a domain or for a course.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonpdfupload.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpdfupload.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Interface to upload a PDF form containing responses to problems entered offline using a PDF reader for storage as submissions.
   </description>
 </file>
 <file>
@@ -6584,7 +7837,15 @@ of users, and (b) to display e-mail of t
   <target dist='default'>home/httpd/perl/Autoenroll.pl</target>
   <categoryname>script</categoryname>
   <description>
-    Local handler for automated enrollment, standard version.
+    Script to perform automated enrollments from institutional classlists.
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/Autoupdate.pl</source>
+  <target dist='default'>home/httpd/perl/Autoupdate.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Script to perform automated updates of names for existing users in the domain using data provided by the domain's administrative information service.
   </description>
 </file>
 <file>
@@ -6612,6 +7873,41 @@ of users, and (b) to display e-mail of t
   </description>
 </file>
 <file>
+  <source>loncom/interface/lonblockingmenu.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonblockingmenu.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Handler for configuration of blocking of access to collaborative tools and/or
+resources for the duration of an exam.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonblockingstatus.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonblockingstatus.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Used for displaying the communication blocking status.
+  </description>
+</file>
+<file>
+<source>loncom/interface/lonwishlist.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonwishlist.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utilities to modify the wishlist (add new links and folders,
+edit, move, sort or delete existing links and folders).
+Links from the wishlist can be imported into courses.</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonwishlistdisplay.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonwishlistdisplay.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Module for displaying the wishlist.</description>
+<status>works/unverified</status>
+</file>
+<file>
   <source>loncom/automation/Autocreate.pl</source>Autocreate.pl
   <target dist='default'>home/httpd/perl/Autocreate.pl</target>
   <categoryname>script</categoryname>
@@ -6620,7 +7916,7 @@ of users, and (b) to display e-mail of t
   </description>
 </file>
 <fileglob>
-    <glob>*</glob>
+    <glob>*.pl</glob>
     <sourcedir>loncom/debugging_tools/</sourcedir>
     <targetdir dist='default'>home/httpd/perl/debug/</targetdir>
     <categoryname>script</categoryname>
@@ -6630,19 +7926,58 @@ of users, and (b) to display e-mail of t
 <filenames>
 activity_to_accesscount.pl;
 clean_db.pl;
+db_copy.pl;
 dump_db.pl;
 escape.pl;
 excise_from_db.pl;
 getties.pl;
 login_count.pl;
 modify_config_files.pl;
+move_construction_spaces.pl;
 parse_scantron.pl;
 seed_accesscount.pl;
 stress.pl;
+testkerberos.pl;
 unescape.pl;
 user_login_count.pl;
 </filenames>
 </fileglob>
+<fileglob>
+    <glob>*.*</glob>
+    <sourcedir>loncom/debugging_tools/compiled/</sourcedir>
+    <targetdir dist='default'>home/httpd/perl/debug/</targetdir>
+    <categoryname>script</categoryname>
+    <description>
+      Binary tools for LON-CAPA
+    </description>
+<filenames>
+create_db_dynamic_64_so.3;
+</filenames>
+</fileglob>
+<file>
+<source>loncom/debugging_tools/compiled/create_db_dynamic</source>
+<target dist='default'>home/httpd/perl/debug/create_db_dynamic</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/compiled/create_db_dynamic_64</source>
+<target dist='default'>home/httpd/perl/debug/create_db_dynamic_64</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/compiled/dump_db_static_32</source>
+<target dist='default'>home/httpd/perl/debug/dump_db_static_32</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
 <file>
 <source>loncom/build/distprobe</source>
 <target dist='default'>home/httpd/perl/distprobe</target>
@@ -6653,5 +7988,15 @@ for probing operating system flavor and
 <note>
 </note>
 </file>
+<file>
+<source>loncom/clusteradmin</source>
+<target dist='default'>home/httpd/perl/manage_dns/clusteradmin</target>
+<categoryname>root script</categoryname>
+<description>
+Script to update cluster tables: dns_hosts.tab and dns_domain.tab
+on a LON-CAPA DNS server.  
+</description>
+<status>works/unverified</status>
+</file>
 </files>
 </lpml>