--- doc/loncapafiles/loncapafiles.lpml	2015/01/03 03:00:18	1.903
+++ doc/loncapafiles/loncapafiles.lpml	2015/03/13 02:10:07	1.906
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.903 2015/01/03 03:00:18 raeburn Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.906 2015/03/13 02:10:07 raeburn Exp $ -->
 
 <!--
 
@@ -703,7 +703,18 @@ extensions</description>
   <categoryname>server readonly</categoryname>
   <description>JQuery countdown timer</description>
 </directory>
-  
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/codemirror</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Codemirror</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/jQuery/addons</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery addons</description>
+</directory>
 <!-- JQuery spellchecker plugin -->
 
 <directory dist='default'>
@@ -3526,6 +3537,7 @@ Institutional_Integration_Course_Codes.t
 Institutional_Integration_Course_Requests.tex;
 Institutional_Integration_Format_Checks.tex;
 Institutional_Integration_Identity_Management.tex;
+Institutional_Integration_Shibboleth.tex;
 Institutional_Integration_User_Categories.tex;
 Latex_Footer.tex;
 Latex_Header.tex;
@@ -4601,38 +4613,25 @@ jlm_greek.jar.pack.gz;
   </filenames>
 </fileglob>
 
-<fileglob>
-  <glob>*.*</glob>
-  <sourcedir>loncom/html/adm/jmol/</sourcedir>
-  <targetdir dist='default'>home/httpd/html/adm/jmol/</targetdir>
-  <categoryname>interface file</categoryname>
+<file>
+  <source>loncom/html/adm/jmol/jmol-loncapa.zip</source>
+  <target dist='default'>home/httpd/html/adm/jmol</target>
+  <categoryname>script</categoryname>
   <description>
-    Jmol files, for displaying structures
+   Jmol for displaying structures, scripted installation that unzips installation file
+   in the appropriate location
+   NOTE: the commands file `mv`'s the files out of the original location provided
+   unzipping the file, making it look cleaner in the /home/.../adm/ directory
   </description>
-  <filenames>
-COPYRIGHT.txt;
-JmolApplet.jar;
-Jmol.js;
-LICENSE.txt;
-README.txt;
-JmolApplet0_Core.jar;
-JmolApplet0_i18n.jar;
-JmolApplet0.jar;
-JmolApplet0_Jars.jar;
-JmolApplet0_Jvxl.jar;
-JmolApplet0_Main.jar;
-JmolApplet0_Popup.jar;
-JmolApplet0_Quantum.jar;
-JmolApplet0_ReadersCifPdb.jar;
-JmolApplet0_ReadersMolXyz.jar;
-JmolApplet0_ReadersMore.jar;
-JmolApplet0_ReadersXml.jar;
-JmolApplet0_ShapeBio.jar;
-JmolApplet0_ShapeSpecial.jar;
-JmolApplet0_Smiles.jar;
-JmolApplet0_Viewer.jar;
-  </filenames>
-</fileglob>
+  <installscript>
+commands
+  </installscript>
+  <dependencies>
+loncom/html/adm/jmol/commands;
+loncom/html/adm/jmol/VERSION;
+loncom/html/adm/jmol/jmol-loncapa.zip;
+  </dependencies>
+</file>
 
 <file>
   <source>loncom/homework/convertjme.pl</source>
@@ -5003,8 +5002,15 @@ JQuery countdown timer Image file for LE
     countdownLED.png;
   </filenames>
 </fileglob>
-
-
+<fileglob>
+    <glob>*.*</glob>
+    <sourcedir>loncom/html/adm/jQuery/addons/</sourcedir>
+    <targetdir>home/httpd/html/adm/jQuery/addons/</targetdir>
+    <categoryname>script</categoryname>
+    <description>
+Addons for jQuery
+    </description>
+</fileglob>
 <!-- JQuery spellchecker plugin -->
 
 <fileglob>
@@ -8489,6 +8495,17 @@ user_login_count.pl;
 create_db_dynamic_64_so.3;
 </filenames>
 </fileglob>
+
+<fileglob>
+    <glob>*.*</glob>
+    <sourcedir>loncom/html/adm/codemirror/</sourcedir>
+    <targetdir>home/httpd/html/adm/codemirror/</targetdir>
+    <categoryname>script</categoryname>
+    <description>
+Codemirror for xml editor and script blocks in colorful editor
+    </description>
+</fileglob>
+
 <file>
 <source>loncom/debugging_tools/compiled/create_db_dynamic</source>
 <target dist='default'>home/httpd/perl/debug/create_db_dynamic</target>