1: # The LearningOnline Network with CAPA
2: # chemical equation style response
3: #
4: # $Id: chemresponse.pm,v 1.55 2005/05/26 20:59:47 albertel Exp $
5: #
6: # Copyright Michigan State University Board of Trustees
7: #
8: # This file is part of the LearningOnline Network with CAPA (LON-CAPA).
9: #
10: # LON-CAPA is free software; you can redistribute it and/or modify
11: # it under the terms of the GNU General Public License as published by
12: # the Free Software Foundation; either version 2 of the License, or
13: # (at your option) any later version.
14: #
15: # LON-CAPA is distributed in the hope that it will be useful,
16: # but WITHOUT ANY WARRANTY; without even the implied warranty of
17: # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
18: # GNU General Public License for more details.
19: #
20: # You should have received a copy of the GNU General Public License
21: # along with LON-CAPA; if not, write to the Free Software
22: # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
23: #
24: # /home/httpd/html/adm/gpl.txt
25: #
26: # http://www.lon-capa.org/
27: #
28: #
29: package Apache::chemresponse;
30: use strict;
31: use Apache::lonxml;
32: use Apache::lonnet;
33: use Apache::lonlocal;
34:
35: BEGIN {
36: &Apache::lonxml::register('Apache::chemresponse',('organicresponse','organicstructure','reactionresponse','chem'));
37: }
38:
39: sub chem_standard_order {
40: my ($reaction) = @_;
41: my ($re,$pr) = split(/->|<=>/,$reaction);
42: my @reactants = split(/\s\+/,$re);
43: my @products = split(/\s\+/,$pr);
44: foreach my $substance (@reactants,@products) {
45: $substance =~ s/(\^\d*)\s+/$1_/g; # protect superscript space
46: $substance =~ s/\s*//g; # strip whitespace
47: $substance =~ s/_/ /g; # restore superscript space
48: }
49: @reactants = sort @reactants;
50: @products = sort @products;
51: my $standard = '';
52: foreach my $substance (@reactants) {
53: $standard .= $substance;
54: $standard .= ' + ';
55: }
56: $standard =~ s/ \+ $//; # get rid of trailing plus sign
57: $standard .= ' -> ';
58: foreach my $substance (@products) {
59: $standard .= $substance;
60: $standard .= ' + ';
61: }
62: $standard =~ s/ \+ $//; # get rid of trailing plus sign
63: return $standard;
64: }
65:
66: sub separate_jme_window {
67: my ($smile_input,$jme_input,$molecule,$options,$shown_text)=@_;
68: my $smilesection;
69: if (defined($smile_input)) {
70: $smilesection=<<SMILESECTION;
71: smiles = document.applets.JME.smiles();
72: opener.document.lonhomework.$smile_input.value = smiles;
73: SMILESECTION
74: }
75: my $jmesection;
76: if (defined($jme_input)) {
77: $jmesection=<<JMESECTION;
78: jmeFile = document.applets.JME.jmeFile();
79: opener.document.lonhomework.$jme_input.value = jmeFile;
80: JMESECTION
81: }
82:
83: if ($molecule) { $molecule='<param name="jme" value="'.$molecule.'" />'; }
84: my $body=<<CHEMPAGE;
85: <html>
86: <head>
87: <title>Molecule Editor</title>
88: <script type="text/javascript">
89: function submitSmiles() {
90: jmeFile = document.applets.JME.jmeFile();
91: if (jmeFile == "") {
92: alert("Nothing to submit");
93: } else {
94: $jmesection
95: $smilesection
96: window.close();
97: }
98: }
99: function openHelpWindow() {
100: window.open("/adm/jme/jme_help.html","","scrollbars=yes,resizable=yes,width=500,height=600");
101: }
102: </script>
103: </head>
104: <body bgcolor="#ffffff">
105: <center>
106: <applet code="JME.class" name="JME" archive="/adm/jme/JME.jar" width="440" height="390">
107: You have to enable Java and JavaScript on your machine.
108: $molecule
109: <param name="options" value="$options" />
110: </applet><br />
111: <font face="arial,helvetica,sans-serif" size="-1"><a href="http://www.molinspiration.com/jme/index.html">JME Editor</a> courtesy of Peter Ertl, Novartis</font>
112: <form>
113: <input type="button" name="submit" value="Insert Answer" onclick = "submitSmiles();" />
114: <br />
115: <input type="button" value=" Close " onclick = "window.close()" />
116:
117: <input type="button" value=" Help " onclick = "openHelpWindow()" />
118: </form>
119: </center>
120: </body>
121: </html>
122: CHEMPAGE
123: $body=&HTML::Entities::encode($body,'<>&"');
124: $body=~s/\n/ /g;
125: my $nothing=&Apache::lonhtmlcommon::javascript_nothing();
126: my $docopen=&Apache::lonhtmlcommon::javascript_docopen();
127: my $display=&mt('Draw Molecule');
128: if (defined($shown_text)) { $display=&mt($shown_text); }
129: my $result=<<CHEMINPUT;
130: <input type="button" value="$display" onclick="javascript:editor=window.open($nothing,'jmeedit','width=500,height=500,menubar=yes,scrollbars=no,resizable=yes');editor.$docopen;editor.document.write('$body');editor.document.close();editor.focus()" />
131: CHEMINPUT
132: return $result;
133: }
134:
135: sub start_organicresponse {
136: my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_;
137: my $result;
138: my $partid = $Apache::inputtags::part;
139: my $id = &Apache::response::start_response($parstack,$safeeval);
140: if ($target eq 'meta') {
141: $result=&Apache::response::meta_package_write('organicresponse');
142: } elsif ($target eq 'web') {
143: my $jmeanswer=&Apache::lonxml::get_param('jmeanswer',$parstack,
144: $safeeval);
145: if ( &Apache::response::show_answer() && $jmeanswer ne '') {
146: my $options=&Apache::lonxml::get_param('options',$parstack,
147: $safeeval);
148: my $width=&Apache::lonxml::get_param('width',$parstack,
149: $safeeval);
150: my $id=&Apache::loncommon::get_cgi_id();
151: $result="<img src='/cgi-bin/convertjme.pl?$id'";
152: if ($options =~ /border/) { $result.= ' border="1"'; }
153: $result.=' />';
154: &Apache::lonnet::appenv('cgi.'.$id.'.JME' =>
155: &Apache::lonnet::escape($jmeanswer),
156: 'cgi.'.$id.'.PNG' => 1,
157: 'cgi.'.$id.'.WIDTH' => $width);
158: } else {
159: my $molecule;
160: if (defined($Apache::lonhomework::history{"resource.$partid.$id.molecule"})) {
161: $molecule=$Apache::lonhomework::history{"resource.$partid.$id.molecule"};
162: } else {
163: $molecule=&Apache::lonxml::get_param('molecule',$parstack,
164: $safeeval);
165: }
166: my $options=&Apache::lonxml::get_param('options',$parstack,
167: $safeeval);
168: my $shown_text;
169: if (&Apache::response::show_answer()) {
170: $shown_text="Show Your Last Answer";
171: }
172: $result=&separate_jme_window("HWVAL_$id","MOLECULE_$id",$molecule,
173: $options,$shown_text);
174: $result.= '<input type="hidden" name="MOLECULE_'.$id.'" value="" />';
175: }
176: } elsif ($target eq 'edit') {
177: $result .=&Apache::edit::tag_start($target,$token);
178: my $options=&Apache::lonxml::get_param('options',$parstack,
179: $safeeval);
180: if ($options !~ /multipart/) { $options.=',multipart'; }
181: $result .='<nobr>'.
182: &Apache::edit::text_arg('Starting Molecule:','molecule',
183: $token,40);
184: my $molecule=&Apache::lonxml::get_param('molecule',$parstack,
185: $safeeval);
186: $result .=&separate_jme_window(undef,
187: &Apache::edit::html_element_name('molecule'),
188: $molecule,$options);
189: $result .='</nobr><br /><nobr>';
190: $result .=&Apache::edit::text_arg('Correct Answer:','answer',
191: $token,40);
192: $result .=&Apache::edit::hidden_arg('jmeanswer',$token);
193: my $jmeanswer=&Apache::lonxml::get_param('jmeanswer',$parstack,
194: $safeeval);
195: $result .=&separate_jme_window(
196: &Apache::edit::html_element_name('answer'),
197: &Apache::edit::html_element_name('jmeanswer'),
198: $jmeanswer,$options);
199: $result .='</nobr><br />';
200: $result .=&Apache::edit::checked_arg('Options:','options',
201: [ ['autoez','Auto E,Z stereochemistry'],
202: ['multipart','Multipart Structures'],
203: ['nostereo','No stereochemistry'],
204: ['reaction','Is a reaction'],
205: ['number','Able to number atoms'] ],
206: ,$token);
207: $result .=&Apache::edit::text_arg('Width of correct answer image:',
208: 'width',$token,10);
209: $result .=&Apache::edit::end_row().&Apache::edit::start_spanning_row();
210: } elsif ($target eq 'modified') {
211: my $constructtag=&Apache::edit::get_new_args($token,$parstack,
212: $safeeval,'molecule',
213: 'answer','jmeanswer',
214: 'options','width');
215: if ($constructtag) { $result = &Apache::edit::rebuild_tag($token); }
216: }
217: return $result;
218: }
219:
220: sub end_organicresponse {
221: my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_;
222: my $result;
223: if ($target eq 'grade' && &Apache::response::submitted()) {
224: &Apache::response::setup_params($$tagstack[-1],$safeeval);
225: my $response = &Apache::response::getresponse();
226: if ( $response =~ /[^\s]/) {
227: my $partid = $Apache::inputtags::part;
228: my $id = $Apache::inputtags::response['-1'];
229: my (@answers)=&Apache::lonxml::get_param_var('answer',$parstack,$safeeval);
230: my %previous = &Apache::response::check_for_previous($response,$partid,$id);
231: $Apache::lonhomework::results{"resource.$partid.$id.submission"}=$response;
232: my $ad;
233: foreach my $answer (@answers) {
234: &Apache::lonxml::debug("submitted a $response for $answer<br \>\n");
235: if ($response eq $answer) {
236: $ad='EXACT_ANS';
237: last;
238: } else {
239: $ad='INCORRECT';
240: }
241: }
242: if ($ad && $Apache::lonhomework::type eq 'survey') {
243: $ad='SUBMITTED';
244: }
245: &Apache::response::handle_previous(\%previous,$ad);
246: $Apache::lonhomework::results{"resource.$partid.$id.awarddetail"}=$ad;
247: $Apache::lonhomework::results{"resource.$partid.$id.molecule"}=$env{"form.MOLECULE_$id"};
248: }
249: } elsif ($target eq "edit") {
250: $result.= &Apache::edit::tag_end($target,$token,'');
251: } elsif ($target eq 'answer') {
252: my (@answers)=&Apache::lonxml::get_param_var('answer',$parstack,
253: $safeeval);
254: $result.=&Apache::response::answer_header('organicresponse');
255: foreach my $answer (@answers) {
256: $result.=&Apache::response::answer_part('organicresponse',$answer);
257: }
258: $result.=&Apache::response::answer_footer('organicresponse');
259: }
260: &Apache::response::end_response;
261: return $result;
262: }
263:
264: sub start_organicstructure {
265: my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_;
266: my $result;
267: if ($target eq 'web') {
268: my $width=&Apache::lonxml::get_param('width',$parstack,$safeeval);
269: my $molecule=&Apache::lonxml::get_param('molecule',$parstack,$safeeval);
270: my $options=&Apache::lonxml::get_param('options',$parstack,$safeeval);
271: my $id=&Apache::loncommon::get_cgi_id();
272: $result="<img src='/cgi-bin/convertjme.pl?$id'";
273: if ($options =~ /border/) { $result.= ' border="1"'; }
274: $result.=' />';
275: &Apache::lonnet::appenv(
276: 'cgi.'.$id.'.JME' => &Apache::lonnet::escape($molecule),
277: 'cgi.'.$id.'.PNG' => 1,
278: 'cgi.'.$id.'.WIDTH' => $width );
279: } elsif ($target eq 'tex') {
280: my $texwidth=&Apache::lonxml::get_param('texwidth',$parstack,$safeeval,undef,1);
281: if (!$texwidth) { $texwidth='90'; }
282: my $molecule=&Apache::lonxml::get_param('molecule',$parstack,$safeeval);
283: my $options=&Apache::lonxml::get_param('options',$parstack,$safeeval);
284: my $filename = $env{'user.name'}.'_'.$env{'user.domain'}.
285: '_'.time.'_'.$$.int(rand(1000)).'_organicstructure';
286: my $id=$filename;
287: &Apache::lonnet::appenv(
288: 'cgi.'.$id.'.JME' => &Apache::lonnet::escape($molecule),
289: 'cgi.'.$id.'.PS' => 1,
290: 'cgi.'.$id.'.WIDTH' => $texwidth );
291: $id=&Apache::lonnet::escape($id);
292: &Apache::lonxml::register_ssi("/cgi-bin/convertjme.pl?$id");
293: if ($options =~ /border/) { $result.= '\fbox{'; }
294: $result .= '\graphicspath{{/home/httpd/perl/tmp/}}\includegraphics[width='.$texwidth.' mm]{'.$filename.'.eps}';
295: if ($options =~ /border/) { $result.= '} '; }
296: } elsif ($target eq 'edit') {
297: $result .=&Apache::edit::tag_start($target,$token);
298: $result .=&Apache::edit::text_arg('Width (pixels):','width',$token,5);
299: $result .=&Apache::edit::text_arg('TeXwidth (mm):','texwidth',$token,5);
300: $result .='<nobr>';
301: $result .=&Apache::edit::text_arg('Molecule:','molecule',$token,40);
302: my $molecule=&Apache::lonxml::get_param('molecule',$parstack,
303: $safeeval);
304: my $options=&Apache::lonxml::get_param('options',$parstack,
305: $safeeval);
306: if ($options !~ /reaction/) {
307: $options.= ',multipart,number';
308: }
309:
310: $result .=&separate_jme_window(undef,
311: &Apache::edit::html_element_name('molecule'),
312: $molecule,$options);
313: $result.="</nobr><br />";
314: $result .=&Apache::edit::checked_arg('Options:','options',
315: [ ['reaction','Is a reaction'],
316: ['border','Draw a border'] ],
317: $token);
318: $result .=&Apache::edit::end_row();
319: } elsif ($target eq 'modified') {
320: my $constructtag=&Apache::edit::get_new_args($token,$parstack,
321: $safeeval,'molecule',
322: 'width','texwidth',
323: 'options');
324: if ($constructtag) { $result = &Apache::edit::rebuild_tag($token); }
325: }
326: return $result;
327: }
328:
329: sub end_organicstructure {
330: my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_;
331: my $result;
332: if ($target eq "edit") {
333: $result.= &Apache::edit::tag_end($target,$token,'');
334: }
335: return $result;
336: }
337:
338: sub edit_reaction_button {
339: my ($id,$field,$reaction)=@_;
340: my $id_es=&Apache::lonnet::escape($id);
341: my $field_es=&Apache::lonnet::escape($field);
342: my $reaction_es=&Apache::lonnet::escape($reaction);
343: my $docopen=&Apache::lonhtmlcommon::javascript_docopen();
344: my $result=<<EDITREACTION;
345: <script type="text/javascript">
346: // <!--
347: function create_reaction_window_${id}_${field} () {
348: editor=window.open('','','width=500,height=270,scrollbars=no,resizable=yes');
349: editor.$docopen;
350: editor.document.writeln('<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML//EN"><html> <head><title>LON-CAPA Reaction Editor</title></head><frameset rows="30%,*" border="0"> <frame src="/res/adm/pages/reactionresponse/reaction_viewer.html?inhibitmenu=yes" name="viewer" scrolling="no" /> <frame src="/res/adm/pages/reactionresponse/reaction_editor.html?inhibitmenu=yes&reaction=$reaction_es&id=$id_es&field=$field_es" name="editor" scrolling="no" /> </frameset> </html>');
351: }
352: // -->
353: </script>
354: <input type='button' value='Edit Answer' onclick="javascript:create_reaction_window_${id}_${field}();void(0);" />
355: EDITREACTION
356: return $result;
357: }
358:
359: sub start_reactionresponse {
360: my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_;
361: my $result;
362: my $id = &Apache::response::start_response($parstack,$safeeval);
363: if ($target eq 'meta') {
364: $result=&Apache::response::meta_package_write('reactionresponse');
365: } elsif ($target eq 'web') {
366: my $partid = $Apache::inputtags::part;
367: my $id = $Apache::inputtags::response['-1'];
368: my $reaction=$Apache::lonhomework::history{"resource.$partid.$id.submission"};
369: if ($reaction eq '') { $reaction=&Apache::lonxml::get_param('initial',$parstack,$safeeval); }
370: my $status=$Apache::inputtags::status['-1'];
371: if ($status eq 'CAN_ANSWER') {
372: $result.=&edit_reaction_button($id,"HWVAL_$id",$reaction);
373: }
374: if ( &Apache::response::show_answer() ) {
375: my $ans=&Apache::lonxml::get_param('answer',$parstack,$safeeval);
376: if (!$Apache::lonxml::default_homework_loaded) {
377: &Apache::lonxml::default_homework_load($safeeval);
378: }
379: @Apache::scripttag::parser_env = @_;
380: $Apache::inputtags::answertxt{$id}=&Apache::run::run("return &chemparse(q\0$ans\0);",$safeeval);
381: }
382: } elsif ($target eq "edit") {
383: $result .=&Apache::edit::tag_start($target,$token);
384: my $answer=&Apache::lonxml::get_param('answer',$parstack,
385: $safeeval);
386: $result .='<nobr>'.
387: &Apache::edit::text_arg('Answer:','answer',$token,40);
388: $result .=&edit_reaction_button($id,&Apache::edit::html_element_name('answer'),$answer).'</nobr>';
389: my $initial=&Apache::lonxml::get_param('initial',$parstack,$safeeval);
390: $result.='<nobr>'.
391: &Apache::edit::text_arg('Initial Reaction:','initial',$token,40);
392: $result .=&edit_reaction_button($id,&Apache::edit::html_element_name('initial'),$initial).'</nobr>';
393:
394: $result .=&Apache::edit::end_row().&Apache::edit::start_spanning_row();
395: } elsif ($target eq 'modified') {
396: my $constructtag=&Apache::edit::get_new_args($token,$parstack,
397: $safeeval,'answer',
398: 'initial');
399: if ($constructtag) { $result = &Apache::edit::rebuild_tag($token); }
400: }
401: return $result;
402: }
403:
404: sub end_reactionresponse {
405: my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_;
406: my $result;
407: if ($target eq 'grade' && &Apache::response::submitted()) {
408: &Apache::response::setup_params($$tagstack[-1],$safeeval);
409: my $response = &Apache::response::getresponse();
410: if ( $response =~ /[^\s]/) {
411: my $partid = $Apache::inputtags::part;
412: my $id = $Apache::inputtags::response['-1'];
413: my (@answers)=&Apache::lonxml::get_param_var('answer',$parstack,$safeeval);
414: my %previous = &Apache::response::check_for_previous($response,$partid,$id);
415: $Apache::lonhomework::results{"resource.$partid.$id.submission"}=$response;
416: my $ad;
417: foreach my $answer (@answers) {
418: &Apache::lonxml::debug("submitted a $response for $answer<br \>\n");
419: if (&chem_standard_order($response) eq
420: &chem_standard_order($answer)) {
421: $ad='EXACT_ANS';
422: } else {
423: $ad='INCORRECT';
424: }
425: }
426: if ($ad && $Apache::lonhomework::type eq 'survey') {
427: $ad='SUBMITTED';
428: }
429: &Apache::response::handle_previous(\%previous,$ad);
430: $Apache::lonhomework::results{"resource.$partid.$id.awarddetail"}=$ad;
431: }
432: } elsif ($target eq "edit") {
433: $result.= &Apache::edit::tag_end($target,$token,'');
434: } elsif ($target eq 'answer') {
435: my (@answers)=&Apache::lonxml::get_param_var('answer',$parstack,
436: $safeeval);
437: $result.=&Apache::response::answer_header('reactionresponse');
438: foreach my $answer (@answers) {
439: $result.=&Apache::response::answer_part('reactionresponse',
440: $answer);
441: }
442: $result.=&Apache::response::answer_footer('reactionresponse');
443: }
444: &Apache::response::end_response;
445: return $result;
446: }
447:
448: sub start_chem {
449: my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style) = @_;
450: my $result = '';
451: my $inside = &Apache::lonxml::get_all_text_unbalanced("/chem",$parser);
452: if ($target eq 'tex' || $target eq 'web') {
453: $inside=&Apache::run::evaluate($inside,$safeeval,$$parstack[-1]);
454: if (!$Apache::lonxml::default_homework_loaded) {
455: &Apache::lonxml::default_homework_load($safeeval);
456: }
457: @Apache::scripttag::parser_env = @_;
458: $result=&Apache::run::run("return &chemparse(q\0$inside\0);",$safeeval);
459: }
460: return $result;
461: }
462:
463: sub end_chem {
464: my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style) = @_;
465: my $result = '';
466: return $result;
467: }
468:
469: 1;
470: __END__
FreeBSD-CVSweb <freebsd-cvsweb@FreeBSD.org>
![[BACK]](/icons/back.gif){kind=icon}
Return to chemresponse.pm CVS log ![[TXT]](/icons/text.gif){kind=icon}
![[DIR]](/icons/dir.gif){kind=icon}
Up to [LON-CAPA] / loncom / homework