--- loncom/homework/grades.pm	2004/05/10 23:18:27	1.199
+++ loncom/homework/grades.pm	2005/04/04 23:56:44	1.256
@@ -1,7 +1,7 @@
 # The LearningOnline Network with CAPA
 # The LON-CAPA Grading handler
 #
-# $Id: grades.pm,v 1.199 2004/05/10 23:18:27 albertel Exp $
+# $Id: grades.pm,v 1.256 2005/04/04 23:56:44 banghart Exp $
 #
 # Copyright Michigan State University Board of Trustees
 #
@@ -25,16 +25,6 @@
 #
 # http://www.lon-capa.org/
 #
-# 2/9,2/13 Guy Albertelli
-# 6/8 Gerd Kortemeyer
-# 7/26 H.K. Ng
-# 8/20 Gerd Kortemeyer
-# Year 2002
-# June-August H.K. Ng
-# Year 2003
-# February, March H.K. Ng
-# July, H. K. Ng
-#
 
 package Apache::grades;
 use strict;
@@ -101,31 +91,12 @@ sub get_symb_and_url {
     return ($symb,$url);
 }
 
-# --- Retrieve the fullname for a user. Return lastname, first middle ---
-# --- Generation is attached next to the lastname if it exists. ---
-sub get_fullname {
-    my ($uname,$udom) = @_;
-    my %name=&Apache::lonnet::get('environment', ['lastname','generation',
-						  'firstname','middlename'],
-                                  $udom,$uname);
-    my $fullname;
-    my ($tmp) = keys(%name);
-    if ($tmp !~ /^(con_lost|error|no_such_host)/i) {
-        $fullname = &Apache::loncoursedata::ProcessFullName
-            (@name{qw/lastname generation firstname middlename/});
-    } else {
-        &Apache::lonnet::logthis('grades.pm: no name data for '.$uname.
-                                 '@'.$udom.':'.$tmp);
-    }
-    return $fullname;
-}
-
 #--- Format fullname, username:domain if different for display
 #--- Use anywhere where the student names are listed
 sub nameUserString {
     my ($type,$fullname,$uname,$udom) = @_;
     if ($type eq 'header') {
-	return '<b>&nbsp;Fullname&nbsp;</b><font color="#999999">(Username)</font>&nbsp;';
+	return '<b>&nbsp;Fullname&nbsp;</b><font color="#999999">(Username)</font>';
     } else {
 	return '&nbsp;'.$fullname.'<font color="#999999">&nbsp;('.$uname.
 	    ($ENV{'user.domain'} eq $udom ? '' : ' ('.$udom.')').')</font>';
@@ -167,6 +138,20 @@ sub response_type {
     return \@partlist,\%handgrade,\%responseType;
 }
 
+sub get_display_part {
+    my ($partID,$url,$symb)=@_;
+    if (!defined($symb) || $symb eq '') {
+	$symb=$ENV{'form.symb'};
+	if ($symb eq '') { $symb=&Apache::lonnet::symbread($url) }
+    }
+    my $display=&Apache::lonnet::EXT('resource.'.$partID.'.display',$symb);
+    if (defined($display) and $display ne '') {
+	$display.= " (<font color=\"#999900\">id $partID</font>)";
+    } else {
+	$display=$partID;
+    }
+    return $display;
+}
 #--- Show resource title
 #--- and parts and response type
 sub showResourceInfo {
@@ -194,7 +179,8 @@ sub showResourceInfo {
 	    }
 	    $partsseen{$partID}=1;
 	}
-	$result.='<td><b>Part </b>'.$partID.' <font color="#999999">'.
+	my $display_part=&get_display_part($partID,$url);
+	$result.='<td><b>Part: </b>'.$display_part.' <font color="#999999">'.
 	    $resID.'</font></td>'.
 	    '<td><b>Type: </b>'.$responsetype.'</td></tr>';
 #	    '<td><b>Handgrade: </b>'.$handgrade.'</td></tr>';
@@ -349,27 +335,36 @@ sub getclasslist {
     #
     my %sections;
     my %fullnames;
-    foreach (keys(%$classlist)) {
-        # the following undefs are for 'domain', and 'username' respectively.
-	my (undef,undef,$end,$start,$id,$section,$fullname,$status)=
-            @{$classlist->{$_}};
+    foreach my $student (keys(%$classlist)) {
+        my $end      = 
+            $classlist->{$student}->[&Apache::loncoursedata::CL_END()];
+        my $start    = 
+            $classlist->{$student}->[&Apache::loncoursedata::CL_START()];
+        my $id       = 
+            $classlist->{$student}->[&Apache::loncoursedata::CL_ID()];
+        my $section  = 
+            $classlist->{$student}->[&Apache::loncoursedata::CL_SECTION()];
+        my $fullname = 
+            $classlist->{$student}->[&Apache::loncoursedata::CL_FULLNAME()];
+        my $status   = 
+            $classlist->{$student}->[&Apache::loncoursedata::CL_STATUS()];
 	# filter students according to status selected
 	if ($filterlist && $ENV{'form.Status'} ne 'Any') {
 	    if ($ENV{'form.Status'} ne $status) {
-		delete ($classlist->{$_});
+		delete ($classlist->{$student});
 		next;
 	    }
 	}
-	$section = ($section ne '' ? $section : 'no');
+	$section = ($section ne '' ? $section : 'none');
 	if (&canview($section)) {
 	    if ($getsec eq 'all' || $getsec eq $section) {
 		$sections{$section}++;
-		$fullnames{$_}=$fullname;
+		$fullnames{$student}=$fullname;
 	    } else {
-		delete($classlist->{$_});
+		delete($classlist->{$student});
 	    }
 	} else {
-	    delete($classlist->{$_});
+	    delete($classlist->{$student});
 	}
     }
     my %seen = ();
@@ -669,20 +664,26 @@ LISTJAVASCRIPT
     $gradeTable.='To '.lc($viewgrade).' a submission or a group of submissions, click on the check box(es) '.
 	'next to the student\'s name(s). Then click on the Next button.<br />'."\n".
 	'<input type="hidden" name="command" value="processGroup" />'."\n";
+
+# checkall buttons
+    $gradeTable.=&check_script('gradesub', 'stuinfo');
     $gradeTable.='<input type="button" '."\n".
 	'onClick="javascript:checkSelect(this.form.stuinfo);" '."\n".
-	'value="Next->" />'."\n";
+	'value="Next->" /> <br />'."\n";
+    $gradeTable.=&check_buttons();
     $gradeTable.='<input type="checkbox" name="checkPlag" checked="on">Check For Plagiarism</input>';
-    my (undef, undef, $fullname) = &getclasslist($getsec,'1');  
+    my ($classlist, undef, $fullname) = &getclasslist($getsec,'1');
     $gradeTable.='<table border="0"><tr><td bgcolor="#777777">'.
 	'<table border="0"><tr bgcolor="#e6ffff">';
     my $loop = 0;
     while ($loop < 2) {
 	$gradeTable.='<td><b>&nbsp;No.</b>&nbsp;</td><td><b>&nbsp;Select&nbsp;</b></td>'.
-	    '<td>'.&nameUserString('header').'</td>';
+	    '<td>'.&nameUserString('header').'&nbsp;Section/Group</td>';
 	if ($ENV{'form.showgrading'} eq 'yes' && $submitonly ne 'all') {
 	    foreach (sort(@$partlist)) {
-		$gradeTable.='<td><b>&nbsp;Part '.(split(/_/))[0].' Status&nbsp;</b></td>';
+		my $display_part=&get_display_part((split(/_/))[0],$url,$symb);
+		$gradeTable.='<td><b>&nbsp;Part: '.$display_part.
+		    ' Status&nbsp;</b></td>';
 	    }
 	}
 	$loop++;
@@ -698,10 +699,12 @@ LISTJAVASCRIPT
 	    (%status) =&student_gradeStatus($url,$symb,$udom,$uname,$partlist);
 	    my $submitted = 0;
 	    my $graded = 0;
+	    my $incorrect = 0;
 	    foreach (keys(%status)) {
 		$submitted = 1 if ($status{$_} ne 'nothing');
-		$graded = 1 if ($status{$_} !~ /^correct/);
-
+		$graded = 1 if ($status{$_} =~ /^ungraded/);
+		$incorrect = 1 if ($status{$_} =~ /^incorrect/);
+		
 		my ($foo,$partid,$foo1) = split(/\./,$_);
 		if ($status{'resource.'.$partid.'.submitted_by'} ne '') {
 		    $submitted = 0;
@@ -711,20 +714,25 @@ LISTJAVASCRIPT
 			$status{'resource.'.$partid.'.submitted_by'}.'" />';
 		}
 	    }
+	    
 	    next if (!$submitted && ($submitonly eq 'yes' ||
 				     $submitonly eq 'incorrect' ||
 				     $submitonly eq 'graded'));
-	    next if (!$graded && ($submitonly eq 'graded' ||
-				  $submitonly eq 'incorrect'));
+	    next if (!$graded && ($submitonly eq 'graded'));
+	    next if (!$incorrect && $submitonly eq 'incorrect');
 	}
 
 	$ctr++;
+	my $section = $classlist->{$student}->[&Apache::loncoursedata::CL_SECTION()];
+
 	if ( $perm{'vgr'} eq 'F' ) {
 	    $gradeTable.='<tr bgcolor="#ffffe6">' if ($ctr%2 ==1);
 	    $gradeTable.='<td align="right">'.$ctr.'&nbsp;</td>'.
-		'<td align="center"><input type=checkbox name="stuinfo" value="'.
-		$student.':'.$$fullname{$student}.'&nbsp;"></td>'."\n".
-		'<td>'.&nameUserString(undef,$$fullname{$student},$uname,$udom).'</td>'."\n";
+               '<td align="center"><label><input type=checkbox name="stuinfo" value="'.
+               $student.':'.$$fullname{$student}.':::SECTION'.$section.
+	       ')&nbsp;" />&nbsp;&nbsp;</label></td>'."\n".'<td>'.
+	       &nameUserString(undef,$$fullname{$student},$uname,$udom).
+	       '&nbsp;'.$section.'</td>'."\n";
 
 	    if ($ENV{'form.showgrading'} eq 'yes' && $submitonly ne 'all') {
 		foreach (sort keys(%status)) {
@@ -746,7 +754,7 @@ LISTJAVASCRIPT
 	$gradeTable.='</tr>';
     }
 
-    $gradeTable.='</table></td></tr></table>'.
+    $gradeTable.='</table></td></tr></table>'."\n".
 	'<input type="button" '.
 	'onClick="javascript:checkSelect(this.form.stuinfo);" '.
 	'value="Next->" /></form>'."\n";
@@ -771,6 +779,52 @@ LISTJAVASCRIPT
 }
 
 #---- Called from the listStudents routine
+
+sub check_script {
+    my ($form, $type)=@_;
+    my $chkallscript='<script type="text/javascript">
+    function checkall() {
+        for (i=0; i<document.forms.'.$form.'.elements.length; i++) {
+            ele = document.forms.'.$form.'.elements[i];
+            if (ele.name == "'.$type.'") {
+            document.forms.'.$form.'.elements[i].checked=true;
+                                       }
+        }
+    }
+
+    function checksec() {
+        for (i=0; i<document.forms.'.$form.'.elements.length; i++) {
+            ele = document.forms.'.$form.'.elements[i];
+           string = document.forms.'.$form.'.chksec.value;
+           if
+          (ele.value.indexOf(":::SECTION"+string)>0) {
+              document.forms.'.$form.'.elements[i].checked=true;
+            }
+        }
+    }
+
+
+    function uncheckall() {
+        for (i=0; i<document.forms.'.$form.'.elements.length; i++) {
+            ele = document.forms.'.$form.'.elements[i];
+            if (ele.name == "'.$type.'") {
+            document.forms.'.$form.'.elements[i].checked=false;
+                                       }
+        }
+    }
+
+</script>'."\n";
+    return $chkallscript;
+}
+
+sub check_buttons {
+    my $buttons.='<input type="button" onclick="checkall()" value="Check All" />';
+    $buttons.='<input type="button" onclick="uncheckall()" value="Uncheck All" />&nbsp;';
+    $buttons.='<input type="button" onclick="checksec()" value="Check Section/Group" />';
+    $buttons.='<input type="text" size="5" name="chksec" />&nbsp;';
+    return $buttons;
+}
+
 #     Displays the submissions for one student or a group of students
 sub processGroup {
     my ($request)  = shift;
@@ -975,6 +1029,8 @@ sub sub_page_kw_js {
     my $request = shift;
     my $iconpath = $request->dir_config('lonIconsURL');
     &commonJSfunctions($request);
+    my $docopen=&Apache::lonhtmlcommon::javascript_docopen();
+    $docopen=~s/^document\.//;
     $request->print(<<SUBJAVASCRIPT);
 <script type="text/javascript" language="javascript">
 
@@ -1084,10 +1140,10 @@ sub sub_page_kw_js {
     var ypos = (screen.height-height)/2-30;
     ypos = (ypos < 0) ? '0' : ypos;
 
-    pWin = window.open('', 'MessageCenter', 'toolbar=no,location=no,scrollbars='+scrollbar+',screenx='+xpos+',screeny='+ypos+',width=600,height='+height);
+    pWin = window.open('', 'MessageCenter', 'resizable=yes,toolbar=no,location=no,scrollbars='+scrollbar+',screenx='+xpos+',screeny='+ypos+',width=600,height='+height);
     pWin.focus();
     pDoc = pWin.document;
-    pDoc.open('text/html','replace');
+    pDoc.$docopen;
     pDoc.write("<html><head>");
     pDoc.write("<title>Message Central</title>");
 
@@ -1215,10 +1271,10 @@ sub sub_page_kw_js {
     var ypos = (screen.height-330)/2-30;
     ypos = (ypos < 0) ? '0' : ypos;
 
-    hwdWin = window.open('', 'KeywordHighlightCentral', 'toolbar=no,location=no,scrollbars=no,width=400,height=300,screenx='+xpos+',screeny='+ypos);
+    hwdWin = window.open('', 'KeywordHighlightCentral', 'resizeable=yes,toolbar=no,location=no,scrollbars=no,width=400,height=300,screenx='+xpos+',screeny='+ypos);
     hwdWin.focus();
     var hDoc = hwdWin.document;
-    hDoc.open('text/html','replace');
+    hDoc.$docopen;
     hDoc.write("<html><head>");
     hDoc.write("<title>Highlight Central</title>");
 
@@ -1289,8 +1345,9 @@ sub gradeBox {
 		  '' : $$record{'resource.'.$partid.'.awarded'}*$wgt);
     my $result='<input type="hidden" name="WGT'.$counter.'_'.$partid.'" value="'.$wgt.'" />'."\n";
 
+    my $display_part=&get_display_part($partid,undef,$symb);
     $result.='<table border="0"><tr><td>'.
-	'<b>Part </b>'.$partid.' <b>Points: </b></td><td>'."\n";
+	'<b>Part: </b>'.$display_part.' <b>Points: </b></td><td>'."\n";
 
     my $ctr = 0;
     $result.='<table border="0"><tr>'."\n";  # display radio buttons in a nice table 10 across
@@ -1386,14 +1443,15 @@ sub submission {
     my ($uname,$udom)     = ($ENV{'form.student'},$ENV{'form.userdom'});
     $udom = ($udom eq '' ? $ENV{'user.domain'} : $udom); #has form.userdom changed for a student?
     my $usec = &Apache::lonnet::getsection($udom,$uname,$ENV{'request.course.id'});
-    $ENV{'form.fullname'} = &get_fullname ($uname,$udom) if $ENV{'form.fullname'} eq '';
+    $ENV{'form.fullname'} = &Apache::loncommon::plainname($uname,$udom,'lastname') if $ENV{'form.fullname'} eq '';
 
     my $symb=($ENV{'form.symb'} ne '' ? $ENV{'form.symb'} : (&Apache::lonnet::symbread($url)));
     if ($symb eq '') { $request->print("Unable to handle ambiguous references:$url:."); return ''; }
 
     if (!&canview($usec)) {
 	$request->print('<font color="red">Unable to view requested student.('.
-			$uname.$udom.$usec.$ENV{'request.course.id'}.')</font>');
+			$uname.'@'.$udom.' in section '.$usec.' in course id '.
+			$ENV{'request.course.id'}.')</font>');
 	$request->print(&show_grading_menu_form($symb,$url));
 	return;
     }
@@ -1622,11 +1680,12 @@ KEYWORDS
 	    my %seenparts;
 	    for my $part (sort keys(%$handgrade)) {
 		my ($partid,$respid) = split(/_/,$part);
+		my $display_part=&get_display_part($partid,$url,$symb);
 		if ($ENV{"form.$uname:$udom:$partid:submitted_by"}) {
 		    if (exists($seenparts{$partid})) { next; }
 		    $seenparts{$partid}=1;
-		    my $submitby='<b>Part '.$partid.
-			' Collaborative submission by: </b>'.
+		    my $submitby='<b>Part:</b> '.$display_part.
+			' <b>Collaborative submission by:</b> '.
 			'<a href="javascript:viewSubmitter(\''.
 			$ENV{"form.$uname:$udom:$partid:submitted_by"}.
 			'\')"; TARGET=_self>'.
@@ -1636,8 +1695,8 @@ KEYWORDS
 		}
 		my $responsetype = $responseType->{$partid}->{$respid};
 		if (!exists($record{"resource.$partid.$respid.submission"})) {
-		    $lastsubonly.='<tr><td bgcolor="#ffffe6"><b>Part '.
-			$partid.'</b> <font color="#999999">( ID '.$respid.
+		    $lastsubonly.='<tr><td bgcolor="#ffffe6"><b>Part:</b> '.
+			$display_part.' <font color="#999999">( ID '.$respid.
 			' )</font>&nbsp; &nbsp;'.
 			'<font color="red">Nothing submitted - no attempts</font><br /><br />';
 		    next;
@@ -1665,13 +1724,30 @@ KEYWORDS
 		    if ($ENV{'form.lastSub'} eq 'lastonly' || 
 			($ENV{'form.lastSub'} eq 'hdgrade' && 
 			 $$handgrade{$part} eq 'yes')) {
-			$lastsubonly.='<tr><td bgcolor="#ffffe6"><b>Part '.
-			    $partid.'</b> <font color="#999999">( ID '.$respid.
+			my $display_part=&get_display_part($partid,$url,$symb);
+			$lastsubonly.='<tr><td bgcolor="#ffffe6"><b>Part:</b> '.
+			    $display_part.' <font color="#999999">( ID '.$respid.
 			    ' )</font>&nbsp; &nbsp;';
+			my @files;
+			if ($record{"resource.$partid.$respid.portfiles"}) {
+			    my $file_url = '/uploaded/'.$udom.'/'.$uname.'/portfolio';
+			    foreach my $file (split(',',$record{"resource.$partid.$respid.portfiles"})) {
+				push(@files,$file_url.$file);
+			    
+				&Apache::lonnet::logthis("found a portfolio file".$record{"resource.$partid.$respid.portfiles"});
+				&Apache::lonnet::logthis("uploaded URL file".$record{"resource.$partid.$respid.uploadedurl"});
+			    }
+			}
 			if ($record{"resource.$partid.$respid.uploadedurl"}) {
-			    &Apache::lonnet::allowuploaded('/adm/grades',
-			      $record{"resource.$partid.$respid.uploadedurl"});
-			    $lastsubonly.='<a href="'.$record{"resource.$partid.$respid.uploadedurl"}.'" target="lonGRDs"><img src="/adm/lonIcons/unknown.gif" border=0"> File uploaded by student</a> <font color="red" size="1">Like all files provided by users, this file may contain virusses</font><br />';
+			    push(@files,$record{"resource.$partid.$respid.uploadedurl"});
+			}
+			if (@files) {
+			    $lastsubonly.='<br /><font color="red" size="1">Like all files provided by users, this file may contain virusses</font><br />';
+			    foreach my $file (@files) {
+				&Apache::lonnet::allowuploaded('/adm/grades',$file);
+				$lastsubonly.='<br /><a href="'.$file.'" target="lonGRDs"><img src="'.&Apache::loncommon::icon($file).'" border=0"> '.$file.'</a>';
+			    }
+			    $lastsubonly.='<br />';
 			}
 			$lastsubonly.='<b>Submitted Answer: </b>'.
 			    &cleanRecord($subval,$responsetype,$symb,$partid,
@@ -1987,10 +2063,12 @@ sub processHandGrade {
 #	    my %record = &Apache::lonnet::restore($symb,$ENV{'request.course.id'},$udom,$uname);
 	    my %status=&student_gradeStatus($url,$symb,$udom,$uname,$partlist);
 	    my $submitted = 0;
-	    my $graded = 1;
+	    my $ungraded = 0;
+	    my $incorrect = 0;
 	    foreach (keys(%status)) {
 		$submitted = 1 if ($status{$_} ne 'nothing');
-		$graded = 0 if ($status{$_} =~ /^correct/);
+		$ungraded = 1 if ($status{$_} =~ /^ungraded/);
+		$incorrect = 1 if ($status{$_} =~ /^incorrect/);
 		my ($foo,$partid,$foo1) = split(/\./,$_);
 		if ($status{'resource.'.$partid.'.submitted_by'} ne '') {
 		    $submitted = 0;
@@ -1999,8 +2077,8 @@ sub processHandGrade {
 	    next if (!$submitted && ($submitonly eq 'yes' ||
 				     $submitonly eq 'incorrect' ||
 				     $submitonly eq 'graded'));
-	    next if (!$graded && ($submitonly eq 'graded' ||
-				  $submitonly eq 'incorrect'));
+	    next if (!$ungraded && ($submitonly eq 'graded'));
+	    next if (!$incorrect && $submitonly eq 'incorrect');
 	}
 	push @nextlist,$student if ($ctr < $ntstu);
 	last if ($ctr == $ntstu);
@@ -2035,6 +2113,7 @@ sub saveHandGrade {
 					   $ENV{'request.course.id'});
     if (!&canmodify($usec)) { return('not_allowed'); }
     my %record     = &Apache::lonnet::restore($symb,$ENV{'request.course.id'},$domain,$stuname);
+    my @parts_graded;
     my %newrecord  = ();
     my ($pts,$wgt) = ('','');
     foreach (split(/:/,$ENV{'form.partlist'.$newflg})) {
@@ -2069,6 +2148,8 @@ sub saveHandGrade {
 	    if ($partial eq $record{'resource.'.$_.'.awarded'}) {
 		#do not update score for part if not changed.
 		next;
+	    } else {
+	        push @parts_graded, $_;
 	    }
 	    if ($record{'resource.'.$_.'.awarded'} ne $partial) {
 		$newrecord{'resource.'.$_.'.awarded'}  = $partial;
@@ -2092,12 +2173,62 @@ sub saveHandGrade {
 	}
     }
     if (scalar(keys(%newrecord)) > 0) {
+        &version_portfiles(\%record, \@parts_graded, $ENV{'request.course.id'}, $symb, $domain, $stuname);
 	&Apache::lonnet::cstore(\%newrecord,$symb,
 				$ENV{'request.course.id'},$domain,$stuname);
     }
     return '',$pts,$wgt;
 }
 
+# ----------- Handles creating versions for portfolio files as answers
+sub version_portfiles {
+    my ($record, $parts_graded, $courseid, $symb, $domain, $stuname) = @_;
+    my $parts = join('|', @$parts_graded);
+    my $portfolio_root = &Apache::loncommon::propath($domain,
+						 $stuname).
+						'/userfiles/portfolio';
+    foreach my $key(keys %$record) {
+        if ($key =~ /^resource\.($parts)\./ && $key =~ /\.portfiles$/) {
+            my @portfiles = split(/,/,$$record{$key});
+            foreach my $file (@portfiles) {
+                my ($directory,$answer_file) =($file =~ /^(.*?)([^\/]*$)/);
+                my $version = 0;
+                my @answer_file_parts = split(/\./, $answer_file);
+                my @dir_list = &Apache::lonnet::dirlist($directory,$domain,$stuname,$portfolio_root);
+                my @file_names;
+                my @file_name_parts;
+                foreach my $row (@dir_list) {
+                    @file_names = split(/\&/,$row,2);
+                    @file_name_parts = split(/\./, $file_names[0]);
+                    # ($file_name_parts[scalar @file_name_parts] eq $answer_file_parts[scalar @answer_file_parts])
+                    if (($file_name_parts[0] eq $answer_file_parts[0]) && 
+                        ($file_name_parts[-1] eq $answer_file_parts[-1])) {
+                        # gets here if filename and extension match, regardless of version
+                        if (scalar @file_name_parts == 3) { # a versioned file is found
+                            # so save it for later
+                            if ($file_name_parts[1] > $version) {$version = $file_name_parts[1]};
+                        }
+                    }
+                }
+                $version++;
+                my $home_server = &Apache::lonnet::homeserver($stuname,$domain,undef);
+                $ENV{'form.copy'} = &Apache::lonnet::getfile("/uploaded/$domain/$stuname/$directory$answer_file");
+                # $ENV{'form.copy.filename'}='';
+                my $copy_result = &Apache::lonnet::finishuserfileupload($stuname,$domain,$home_server,'copy',
+                                    '/portfolio'.$directory.$answer_file_parts[0].'.'.$version.'.'.$answer_file_parts[-1]);
+                &Apache::lonnet::logthis('copy result is '.$copy_result);
+                &Apache::lonnet::logthis('answer file is '.$answer_file.
+                        ' becomes '.$answer_file_parts[0].'.'.$version.'.'.$answer_file_parts[-1]);
+                &Apache::lonnet::logthis('from dir list is '.$file_names[0].' has '.@file_name_parts.' parts');
+            }
+            &Apache::lonnet::logthis('found key portfiles '.$key);
+            &Apache::lonnet::logthis('found value portfiles '.$$record{$key});
+        }
+    } 
+    
+    
+}
+
 #--------------------------------------------------------------------------------------
 #
 #-------------------------- Next few routines handles grading by section or whole class
@@ -2299,7 +2430,7 @@ sub viewgrades {
     my $sectionClass;
     if ($ENV{'form.section'} eq 'all') {
 	$sectionClass='Class </h3>';
-    } elsif ($ENV{'form.section'} eq 'no') {
+    } elsif ($ENV{'form.section'} eq 'none') {
 	$sectionClass='Students in no Section </h3>';
     } else {
 	$sectionClass='Students in Section '.$ENV{'form.section'}.'</h3>';
@@ -2326,7 +2457,8 @@ sub viewgrades {
 	    $ctsparts.'" value="'.$partid.'" />'."\n";
 	$result.='<input type="hidden" name="weight_'.
 	    $partid.'" value="'.$weight{$partid}.'" />'."\n";
-	$result.='<tr><td><b>Part  '.$partid.'&nbsp; &nbsp;Point:</b> </td><td>';
+	my $display_part=&get_display_part($partid,$url,$symb);
+	$result.='<tr><td><b>Part:</b> '.$display_part.'&nbsp; &nbsp;<b>Point:</b> </td><td>';
 	$result.='<table border="0"><tr>';  
 	my $ctr = 0;
 	while ($ctr<=$weight{$partid}) { # display radio buttons in a nice table 10 across
@@ -2365,14 +2497,17 @@ sub viewgrades {
 	my $display=&Apache::lonnet::metadata($url,$part.'.display');
 	$display =~ s|^Number of Attempts|Tries<br />|; # makes the column narrower
 	if  (!$display) { $display = &Apache::lonnet::metadata($url,$part.'.name'); }
+	my ($partid) = &split_part_type($part);
+	my $display_part=&get_display_part($partid,$url,$symb);
 	if ($display =~ /^Partial Credit Factor/) {
-	    my ($partid) = &split_part_type($part);
-	    $result.='<td><b>Score Part '.$partid.'<br />(weight = '.
-		$weight{$partid}.')</b></td>'."\n";
+	    $result.='<td><b>Score Part:</b> '.$display_part.
+		' <br /><b>(weight = '.$weight{$partid}.')</b></td>'."\n";
 	    next;
+	} else {
+	    $display =~s/\[Part: \Q$partid\E\]/Part:<\/b> $display_part/;
 	}
 	$display =~ s|Problem Status|Grade Status<br />|;
-	$result.='<td><b>'.$display.'</b></td>'."\n";
+	$result.='<td><b>'.$display.'</td>'."\n";
     }
     $result.='</tr>';
 
@@ -2381,9 +2516,6 @@ sub viewgrades {
     my (undef,undef,$fullname) = &getclasslist($ENV{'form.section'},'1');
     my $ctr = 0;
     foreach (sort {lc($$fullname{$a}) cmp lc($$fullname{$b}) } keys %$fullname) {
-	my $uname = $_;
-	$uname=~s/:/_/;
-	$result.='<input type="hidden" name="ctr'.$ctr.'" value="'.$uname.'" />'."\n";
 	$ctr++;
 	$result.=&viewstudentgrade($url,$symb,$ENV{'request.course.id'},
 				   $_,$$fullname{$_},\@parts,\%weight,$ctr);
@@ -2407,18 +2539,21 @@ sub viewstudentgrade {
     my ($uname,$udom) = split(/:/,$student);
     $student=~s/:/_/;
     my %record=&Apache::lonnet::restore($symb,$courseid,$udom,$uname);
-    my $result='<tr bgcolor="#ffffdd"><td align="right">'.$ctr.'&nbsp;</td><td>&nbsp;'.
+    my $result='<tr bgcolor="#ffffdd"><td align="right">'.
+	'<input type="hidden" name="ctr'.($ctr-1).'" value="'.$student.'" />'.
+	"\n".$ctr.'&nbsp;</td><td>&nbsp;'.
 	'<a href="javascript:viewOneStudent(\''.$uname.'\',\''.$udom.
 	'\')"; TARGET=_self>'.$fullname.'</a> '.
 	'<font color="#999999">('.$uname.($ENV{'user.domain'} eq $udom ? '' : ':'.$udom).')</font></td>'."\n";
     foreach my $apart (@$parts) {
 	my ($part,$type) = &split_part_type($apart);
 	my $score=$record{"resource.$part.$type"};
+	$result.='<td align="middle">';
 	if ($type eq 'awarded') {
 	    my $pts = $score eq '' ? '' : $score*$$weight{$part};
 	    $result.='<input type="hidden" name="'.
 		'GD_'.$student.'_'.$part.'_awarded_s" value="'.$pts.'" />'."\n";
-	    $result.='<td align="middle"><input type="text" name="'.
+	    $result.='<input type="text" name="'.
 		'GD_'.$student.'_'.$part.'_awarded" '.
 		'onChange="javascript:changeSelect(\''.$part.'\',\''.$student.
 		'\')" value="'.$pts.'" size="4" /></td>'."\n";
@@ -2427,7 +2562,7 @@ sub viewstudentgrade {
 	    $status = 'nothing' if ($status eq '');
 	    $result.='<input type="hidden" name="'.'GD_'.$student.'_'.
 		$part.'_solved_s" value="'.$status.'" />'."\n";
-	    $result.='<td align="middle">&nbsp;<select name="'.
+	    $result.='&nbsp;<select name="'.
 		'GD_'.$student.'_'.$part.'_solved" '.
 		'onChange="javascript:changeOneScore(\''.$part.'\',\''.$student.'\')" >'."\n";
 	    $result.= (($status eq 'excused') ? '<option> </option><option selected="on">excused</option>' 
@@ -2438,7 +2573,7 @@ sub viewstudentgrade {
 	    $result.='<input type="hidden" name="'.
 		'GD_'.$student.'_'.$part.'_'.$type.'_s" value="'.$score.'" />'.
 		    "\n";
-	    $result.='<td align="middle"><input type="text" name="'.
+	    $result.='<input type="text" name="'.
 		'GD_'.$student.'_'.$part.'_'.$type.'" '.
 		'value="'.$score.'" size="4" /></td>'."\n";
 	}
@@ -2502,9 +2637,10 @@ sub editgrades {
 	}
     }
     foreach my $partid (@partid) {
+	my $display_part=&get_display_part($partid,$url,$symb);
 	$result .= '<td colspan="'.$columns{$partid}.
-	    '" align="center"><b>Part '.$partid.
-	    '</b> (Weight = '.$weight{$partid}.')</td>';
+	    '" align="center"><b>Part:</b> '.$display_part.
+	    ' (Weight = '.$weight{$partid}.')</td>';
 
     }
     $result .= '</tr><tr bgcolor="#deffff">';
@@ -2598,7 +2734,7 @@ sub editgrades {
     if ($noupdate) {
 #	my $numcols=(scalar(@partid)*(scalar(@parts)-1)*2)+3;
 	my $numcols=scalar(@partid)*4+2;
-	$result .= '<tr bgcolor="#ffffff"><td align="center" colspan="'.$numcols.'">No Changes Occurred For the Students Below</td></tr>'.$noupdate;
+	$result .= '<tr bgcolor="#ffffff"><td align="center" colspan="'.$numcols.'">No Changes Occurred For the Students Below</td></tr><tr bgcolor="#ffffde">'.$noupdate;
     }
     $result .= '</table></td></tr></table>'."\n".
 	&show_grading_menu_form ($symb,$url);
@@ -2627,24 +2763,26 @@ sub split_part_type {
 #
 #--- Javascript to handle csv upload
 sub csvupload_javascript_reverse_associate {
+    my $error1=&mt('You need to specify the username or ID');
+    my $error2=&mt('You need to specify at least one grading field');
   return(<<ENDPICK);
   function verify(vf) {
     var foundsomething=0;
     var founduname=0;
-    var founddomain=0;
+    var foundID=0;
     for (i=0;i<=vf.nfields.value;i++) {
       tw=eval('vf.f'+i+'.selectedIndex');
-      if (i==0 && tw!=0) { founduname=1; }
-      if (i==1 && tw!=0) { founddomain=1; }
-      if (i!=0 && i!=1 && tw!=0) { foundsomething=1; }
-    }
-    if (founduname==0 || founddomain==0) {
-      alert('You need to specify at both the username and domain');
-      return;
+      if (i==0 && tw!=0) { foundID=1; }
+      if (i==1 && tw!=0) { founduname=1; }
+      if (i!=0 && i!=1 && i!=2 && tw!=0) { foundsomething=1; }
+    }
+    if (founduname==0 && foundID==0) {
+	alert('$error1');
+	return;
     }
     if (foundsomething==0) {
-      alert('You need to specify at least one grading field');
-      return;
+	alert('$error2');
+	return;
     }
     vf.submit();
   }
@@ -2665,24 +2803,26 @@ ENDPICK
 }
 
 sub csvupload_javascript_forward_associate {
+    my $error1=&mt('You need to specify the username or ID');
+    my $error2=&mt('You need to specify at least one grading field');
   return(<<ENDPICK);
   function verify(vf) {
     var foundsomething=0;
     var founduname=0;
-    var founddomain=0;
+    var foundID=0;
     for (i=0;i<=vf.nfields.value;i++) {
       tw=eval('vf.f'+i+'.selectedIndex');
-      if (tw==1) { founduname=1; }
-      if (tw==2) { founddomain=1; }
-      if (tw>2) { foundsomething=1; }
-    }
-    if (founduname==0 || founddomain==0) {
-      alert('You need to specify at both the username and domain');
-      return;
+      if (tw==1) { foundID=1; }
+      if (tw==2) { founduname=1; }
+      if (tw>3) { foundsomething=1; }
+    }
+    if (founduname==0 && foundID==0) {
+	alert('$error1');
+	return;
     }
     if (foundsomething==0) {
-      alert('You need to specify at least one grading field');
-      return;
+	alert('$error2');
+	return;
     }
     vf.submit();
   }
@@ -2709,7 +2849,8 @@ sub csvuploadmap_header {
     }
 
     my ($result) = &showResourceInfo($url,$ENV{'form.probTitle'});
-
+    my $checked=(($ENV{'form.noFirstLine'})?' checked="checked"':'');
+    my $ignore=&mt('Ignore First Line');
     $request->print(<<ENDPICK);
 <form method="post" enctype="multipart/form-data" action="/adm/grades" name="gradesupload">
 <h3><font color="#339933">Uploading Class Grades</font></h3>
@@ -2720,6 +2861,7 @@ Total number of records found in file: $
 Enter as many fields as you can. The system will inform you and bring you back
 to this page if the data selected is insufficient to run your class.<hr />
 <input type="button" value="Reverse Association" onClick="javascript:this.form.associate.value='Reverse Association';submit(this.form);" />
+<label><input type="checkbox" name="noFirstLine" $checked />$ignore</label>
 <input type="hidden" name="associate"  value="" />
 <input type="hidden" name="phase"      value="three" />
 <input type="hidden" name="datatoken"  value="$datatoken" />
@@ -2731,7 +2873,7 @@ to this page if the data selected is ins
 <input type="hidden" name="url"        value="$url" />
 <input type="hidden" name="saveState"  value="$ENV{'form.saveState'}" />
 <input type="hidden" name="probTitle"  value="$ENV{'form.probTitle'}" />
-<input type="hidden" name="command"    value="csvuploadassign" />
+<input type="hidden" name="command"    value="csvuploadoptions" />
 <hr />
 <script type="text/javascript" language="Javascript">
 $javascript
@@ -2744,13 +2886,18 @@ ENDPICK
 sub csvupload_fields {
     my ($url,$symb) = @_;
     my (@parts) = &getpartlist($url,$symb);
-    my @fields=(['username','Student Username'],['domain','Student Domain']);
+    my @fields=(['ID','Student ID'],
+		['username','Student Username'],
+		['domain','Student Domain']);
     foreach my $part (sort(@parts)) {
 	my @datum;
 	my $display=&Apache::lonnet::metadata($url,$part.'.display');
 	my $name=$part;
 	if  (!$display) { $display = $name; }
 	@datum=($name,$display);
+	if ($name=~/^stores_(.*)_awarded/) {
+	    push(@fields,['stores_'.$1.'_points',"Points [Part: $1]"]);
+	}
 	push(@fields,\@datum);
     }
     return (@fields);
@@ -2791,6 +2938,7 @@ CSVFORMJS
 	'.</b></td></tr>'."\n";
     $result.='<tr bgcolor=#ffffe6><td>'."\n";
     my $upfile_select=&Apache::loncommon::upfile_select_html();
+    my $ignore=&mt('Ignore First Line');
     $result.=<<ENDUPFORM;
 <form method="post" enctype="multipart/form-data" action="/adm/grades" name="gradesupload">
 <input type="hidden" name="symb" value="$symb" />
@@ -2800,7 +2948,7 @@ CSVFORMJS
 <input type="hidden" name="saveState"  value="$ENV{'form.saveState'}" />
 $upfile_select
 <br /><input type="button" onClick="javascript:checkUpload(this.form);" value="Upload Scores" />
-
+<label><input type="checkbox" name="noFirstLine" />$ignore</lable>
 </form>
 ENDUPFORM
     $result.='</td></tr></table>'."\n";
@@ -2823,6 +2971,7 @@ sub csvuploadmap {
 	&Apache::loncommon::load_tmp_file($request);
     }
     my @records=&Apache::loncommon::upfile_record_sep();
+    if ($ENV{'form.noFirstLine'}) { shift(@records); }
     &csvuploadmap_header($request,$symb,$url,$datatoken,$#records+1);
     my ($i,$keyfields);
     if (@records) {
@@ -2848,14 +2997,51 @@ sub csvuploadmap {
     return '';
 }
 
-sub csvuploadassign {
+sub csvuploadoptions {
     my ($request)= @_;
     my ($symb,$url)=&get_symb_and_url($request);
-    if (!$symb) {return '';}
-    &Apache::loncommon::load_tmp_file($request);
-    my @gradedata = &Apache::loncommon::upfile_record_sep();
+    my $checked=(($ENV{'form.noFirstLine'})?'1':'0');
+    my $ignore=&mt('Ignore First Line');
+    $request->print(<<ENDPICK);
+<form method="post" enctype="multipart/form-data" action="/adm/grades" name="gradesupload">
+<h3><font color="#339933">Uploading Class Grade Options</font></h3>
+<input type="hidden" name="command"    value="csvuploadassign" />
+<input type="submit" value="Assign Grades" /><br />
+<p>
+<label>
+   <input type="checkbox" name="show_full_results" />
+   Show a table of all changes
+</label>
+</p>
+<p>
+<label>
+   <input type="checkbox" name="overwite_scores" checked="checked" />
+   Overwrite any existing score
+</label>
+</p>
+ENDPICK
+    my %fields=&get_fields();
+    if (!defined($fields{'domain'})) {
+	my $domform = &Apache::loncommon::select_dom_form($ENV{'request.role.domain'},'default_domain');
+	$request->print("\n<p> Users are in domain: ".$domform."</p>\n");
+    }
+    foreach my $key (sort(keys(%ENV))) {
+	if ($key !~ /^form\.(.*)$/) { next; }
+	my $cleankey=$1;
+	if ($cleankey eq 'command') { next; }
+	$request->print('<input type="hidden" name="'.$cleankey.
+			'"  value="'.$ENV{$key}.'" />'."\n");
+    }
+    # FIXME do a check for any duplicated user ids...
+    # FIXME do a check for any invalid user ids?...
+    $request->print("<hr /></form>\n");
+    $request->print(&show_grading_menu_form($symb,$url));
+    return '';
+}
+
+sub get_fields {
+    my %fields;
     my @keyfields = split(/\,/,$ENV{'form.keyfields'});
-    my %fields=();
     for (my $i=0; $i<=$ENV{'form.nfields'}; $i++) {
 	if ($ENV{'form.upfile_associate'} eq 'reverse') {
 	    if ($ENV{'form.f'.$i} ne 'none') {
@@ -2867,6 +3053,17 @@ sub csvuploadassign {
 	    }
 	}
     }
+    return %fields;
+}
+
+sub csvuploadassign {
+    my ($request)= @_;
+    my ($symb,$url)=&get_symb_and_url($request);
+    if (!$symb) {return '';}
+    &Apache::loncommon::load_tmp_file($request);
+    my @gradedata = &Apache::loncommon::upfile_record_sep();
+    if ($ENV{'form.noFirstLine'}) { shift(@gradedata); }
+    my %fields=&get_fields();
     $request->print('<h3>Assigning Grades</h3>');
     my $courseid=$ENV{'request.course.id'};
     my ($classlist) = &getclasslist('all',0);
@@ -2875,12 +3072,29 @@ sub csvuploadassign {
     my $countdone=0;
     foreach my $grade (@gradedata) {
 	my %entries=&Apache::loncommon::record_sep($grade);
+	my $domain;
+	if ($entries{$fields{'domain'}}) {
+	    $domain=$entries{$fields{'domain'}};
+	} else {
+	    $domain=$ENV{'form.default_domain'};
+	}
+	$domain=~s/\s//g;
 	my $username=$entries{$fields{'username'}};
 	$username=~s/\s//g;
-	my $domain=$entries{$fields{'domain'}};
-	$domain=~s/\s//g;
+	if (!$username) {
+	    my $id=$entries{$fields{'ID'}};
+	    $id=~s/\s//g;
+	    my %ids=&Apache::lonnet::idget($domain,$id);
+	    $username=$ids{$id};
+	}
 	if (!exists($$classlist{"$username:$domain"})) {
-	    push(@skipped,"$username:$domain");
+	    my $id=$entries{$fields{'ID'}};
+	    $id=~s/\s//g;
+	    if ($id) {
+		push(@skipped,"$id:$domain");
+	    } else {
+		push(@skipped,"$username:$domain");
+	    }
 	    next;
 	}
 	my $usec=$classlist->{"$username:$domain"}[5];
@@ -2888,16 +3102,34 @@ sub csvuploadassign {
 	    push(@notallowed,"$username:$domain");
 	    next;
 	}
+	my %points;
 	my %grades;
 	foreach my $dest (keys(%fields)) {
-	    if ($dest eq 'username' || $dest eq 'domain') { next; }
-	    if ($entries{$fields{$dest}} eq '') { next; }
-	    my $store_key=$dest;
-	    $store_key=~s/^stores/resource/;
-	    $store_key=~s/_/\./g;
-	    $grades{$store_key}=$entries{$fields{$dest}};
+	    if ($dest eq 'ID' || $dest eq 'username' ||
+		$dest eq 'domain') { next; }
+	    if ($entries{$fields{$dest}} =~ /^\s*$/) { next; }
+	    if ($dest=~/stores_(.*)_points/) {
+		my $part=$1;
+		my $wgt =&Apache::lonnet::EXT('resource.'.$part.'.weight',
+					      $symb,$domain,$username);
+		$entries{$fields{$dest}}=~s/\s//g;
+		my $pcr=$entries{$fields{$dest}} / $wgt;
+		my $award='correct_by_override';
+		$grades{"resource.$part.awarded"}=$pcr;
+		$grades{"resource.$part.solved"}=$award;
+		$points{$part}=1;
+	    } else {
+		if ($dest=~/stores_(.*)_awarded/) { if ($points{$1}) {next;} }
+		if ($dest=~/stores_(.*)_solved/)  { if ($points{$1}) {next;} }
+		my $store_key=$dest;
+		$store_key=~s/^stores/resource/;
+		$store_key=~s/_/\./g;
+		$grades{$store_key}=$entries{$fields{$dest}};
+	    }
 	}
+	if (! %grades) { push(@skipped,"$username:$domain no data to store"); }
 	$grades{"resource.regrader"}="$ENV{'user.name'}:$ENV{'user.domain'}";
+#	&Apache::lonnet::logthis(" storing ".(join('-',%grades)));
 	&Apache::lonnet::cstore(\%grades,$symb,$ENV{'request.course.id'},
 				$domain,$username);
 	$request->print('.');
@@ -3036,7 +3268,8 @@ sub getSymbMap {
     my $minder = 0;
 
     # Gather every sequence that has problems.
-    my @sequences = $navmap->retrieveResources(undef, sub { shift->is_map(); }, 1);
+    my @sequences = $navmap->retrieveResources(undef, sub { shift->is_map(); },
+					       1,0,1);
     for my $sequence ($navmap->getById('0.0'), @sequences) {
 	if ($navmap->hasResource($sequence, sub { shift->is_problem(); }, 0) ) {
 	    my $title = $minder.'.'.$sequence->compTitle();
@@ -3045,8 +3278,6 @@ sub getSymbMap {
 	    $minder++;
 	}
     }
-
-    $navmap->untieHashes();
     return \@titles,\%symbx;
 }
 
@@ -3117,7 +3348,7 @@ sub displayPage {
         if($curRes == $iterator->BEGIN_MAP) { $depth++; }
         if($curRes == $iterator->END_MAP) { $depth--; }
 
-        if (ref($curRes) && $curRes->is_problem()) {
+        if (ref($curRes) && $curRes->is_problem() && !$curRes->randomout) {
 	    my $parts = $curRes->parts();
             my $title = $curRes->compTitle();
 	    my $symbx = $curRes->symb();
@@ -3179,8 +3410,6 @@ sub displayPage {
         $curRes = $iterator->next();
     }
 
-    $navmap->untieHashes();
-
     $studentTable.='</td></tr></table></td></tr></table>'."\n".
 	'<input type="button" value="Save" '.
 	'onClick="javascript:checkSubmitPage(this.form,'.$question.');" TARGET=_self />'.
@@ -3193,9 +3422,12 @@ sub displayPage {
 
 sub displaySubByDates {
     my ($symb,$record,$parts,$responseType,$checkIcon,$uname,$udom) = @_;
+    my $isCODE=0;
+    if (exists($record->{'resource.CODE'})) { $isCODE=1; }
     my $studentTable='<table border="0" width="100%"><tr><td bgcolor="#777777">'.
 	'<table border="0" width="100%"><tr bgcolor="#e6ffff">'.
 	'<td><b>Date/Time</b></td>'.
+	($isCODE?'<td><b>CODE</b></td>':'').
 	'<td><b>Submission</b></td>'.
 	'<td><b>Status&nbsp;</b></td></tr>';
     my ($version);
@@ -3208,18 +3440,22 @@ sub displaySubByDates {
     for ($version=1;$version<=$$record{'version'};$version++) {
 	my $timestamp = scalar(localtime($$record{$version.':timestamp'}));
 	$studentTable.='<tr bgcolor="#ffffff" valign="top"><td>'.$timestamp.'</td>';
+	if ($isCODE) {
+	    $studentTable.='<td>'.$record->{$version.':resource.CODE'}.'</td>';
+	}
 	my @versionKeys = split(/\:/,$$record{$version.':keys'});
 	my @displaySub = ();
 	foreach my $partid (@{$parts}) {
 	    my @matchKey = sort(grep /^resource\.\Q$partid\E\..*?\.submission$/,@versionKeys);
 #	    next if ($$record{"$version:resource.$partid.solved"} eq '');
+	    my $display_part=&get_display_part($partid,undef,$symb);
 	    foreach my $matchKey (@matchKey) {
 		if (exists($$record{$version.':'.$matchKey}) &&
 		    $$record{$version.':'.$matchKey} ne '') {
 		    my ($responseId)=($matchKey=~ /^resource\.\Q$partid\E\.(.*?)\.submission$/);
-		    $displaySub[0].='<b>Part&nbsp;'.$partid.'&nbsp;';
+		    $displaySub[0].='<b>Part:</b>&nbsp;'.$display_part.'&nbsp;';
 		    $displaySub[0].='<font color="#999999">(ID&nbsp;'.
-			$responseId.')</font>&nbsp;';
+			$responseId.')</font>&nbsp;<b>';
 		    if ($$record{"$version:resource.$partid.tries"} eq '') {
 			$displaySub[0].='Trial&nbsp;not&nbsp;counted';
 		    } else {
@@ -3237,14 +3473,14 @@ sub displaySubByDates {
 		}
 	    }
 	    if (exists $$record{"$version:resource.$partid.award"}) {
-		$displaySub[1].='<b>Part&nbsp;'.$partid.'</b> &nbsp;'.
+		$displaySub[1].='<b>Part:</b>&nbsp;'.$display_part.' &nbsp;'.
 		    lc($$record{"$version:resource.$partid.award"}).' '.
 		    $mark{$$record{"$version:resource.$partid.solved"}}.
 		    '<br />';
 	    }
 	    if (exists $$record{"$version:resource.$partid.regrader"}) {
 		$displaySub[2].=$$record{"$version:resource.$partid.regrader"}.
-		    ' (<b>'.&mt('Part').':</b> '.$partid.')';
+		    ' (<b>'.&mt('Part').':</b> '.$display_part.')';
 	    }
 	}
 	# needed because old essay regrader has not parts info
@@ -3341,12 +3577,13 @@ sub updateGradeByPage {
 		    $changeflag++;
 		    $newpts = '';
 		}
-
+		my $display_part=&get_display_part($partid,undef,
+						   $curRes->symb());
 		my $oldstatus = $ENV{'form.solved'.$question.'_'.$partid};
-		$displayPts[0].='&nbsp;<b>Part</b> '.$partid.' = '.
+		$displayPts[0].='&nbsp;<b>Part:</b> '.$display_part.' = '.
 		    (($oldstatus eq 'excused') ? 'excused' : $oldpts).
 		    '&nbsp;<br>';
-		$displayPts[1].='&nbsp;<b>Part</b> '.$partid.' = '.
+		$displayPts[1].='&nbsp;<b>Part:</b> '.$display_part.' = '.
 		     (($score eq 'excused') ? 'excused' : $newpts).
 		    '&nbsp;<br>';
 
@@ -3374,8 +3611,6 @@ sub updateGradeByPage {
         $curRes = $iterator->next();
     }
 
-    $navmap->untieHashes();
-
     $studentTable.='</td></tr></table></td></tr></table>';
     $studentTable.=&show_grading_menu_form($ENV{'form.symb'},$ENV{'form.url'});
     my $grademsg=($changeflag == 0 ? 'No score was changed or updated.' :
@@ -3420,19 +3655,27 @@ sub getSequenceDropDown {
     return $result;
 }
 
-sub scantron_uploads {
-    if (!-e $Apache::lonnet::perlvar{'lonScansDir'}) { return ''};
-    my $result=	'<select name="scantron_selectfile">';
+sub scantron_filenames {
     my $cdom=$ENV{'course.'.$ENV{'request.course.id'}.'.domain'};
     my $cname=$ENV{'course.'.$ENV{'request.course.id'}.'.num'};
     my @files=&Apache::lonnet::dirlist('userfiles',$cdom,$cname,
 				    &Apache::loncommon::propath($cdom,$cname));
-    $result.="<option></option>";
-    foreach my $filename (@files) {
+    my @possiblenames;
+    foreach my $filename (sort(@files)) {
 	($filename)=split(/&/,$filename);
 	if ($filename!~/^scantron_orig_/) { next ; }
 	$filename=~s/^scantron_orig_//;
-	$result.="<option>$filename</option>\n";
+	push(@possiblenames,$filename);
+    }
+    return @possiblenames;
+}
+
+sub scantron_uploads {
+    my ($file2grade) = @_;
+    my $result=	'<select name="scantron_selectfile">';
+    $result.="<option></option>";
+    foreach my $filename (sort(&scantron_filenames())) {
+	$result.="<option".($filename eq $file2grade ? ' selected="on"':'').">$filename</option>\n";
     }
     $result.="</select>";
     return $result;
@@ -3457,7 +3700,7 @@ sub scantron_CODElist {
     my $cnum = $ENV{'course.'.$ENV{'request.course.id'}.'.num'};
     my @names=&Apache::lonnet::getkeys('CODEs',$cdom,$cnum);
     my $namechoice='<option></option>';
-    foreach my $name (@names) {
+    foreach my $name (sort {uc($a) cmp uc($b)} @names) {
 	if ($name =~ /^error: 2 /) { next; }
 	$namechoice.='<option value="'.$name.'">'.$name.'</option>';
     }
@@ -3478,13 +3721,13 @@ sub scantron_CODEunique {
 }
 
 sub scantron_selectphase {
-    my ($r) = @_;
+    my ($r,$file2grade) = @_;
     my ($symb,$url)=&get_symb_and_url($r);
     if (!$symb) {return '';}
     my $sequence_selector=&getSequenceDropDown($r,$symb);
     my $default_form_data=&defaultFormData($symb,$url);
     my $grading_menu_button=&show_grading_menu_form($symb,$url);
-    my $file_selector=&scantron_uploads();
+    my $file_selector=&scantron_uploads($file2grade);
     my $format_selector=&scantron_scantab();
     my $CODE_selector=&scantron_CODElist();
     my $CODE_unique=&scantron_CODEunique();
@@ -3494,9 +3737,9 @@ sub scantron_selectphase {
     $result.= <<SCANTRONFORM;
     <table width="100%" border="0">
     <tr>
+     <form method="post" enctype="multipart/form-data" action="/adm/grades" name="scantron_process">
       <td bgcolor="#777777">
-       <form method="post" enctype="multipart/form-data" action="/adm/grades" name="scantron_process">
-       <input type="hidden" name="command" value="scantron_validate" />
+       <input type="hidden" name="command" value="scantron_warning" />
         $default_form_data
         <table width="100%" border="0">
           <tr bgcolor="#e6ffff">
@@ -3522,8 +3765,8 @@ sub scantron_selectphase {
           <tr bgcolor="#ffffe6">
 	    <td> Options: </td>
             <td>
-                <input type="checkbox" name="scantron_options_redo" value="redo_skipped"/> Do only skipped records <br />
-                <input type="checkbox" name="scantron_options_ignore" value="ignore_corrections"/> Remove any exisiting corrections
+                <input type="checkbox" name="scantron_options_redo" value="redo_skipped"/> Do only previously skipped records <br />
+                <input type="checkbox" name="scantron_options_ignore" value="ignore_corrections"/> Remove all exisiting corrections
 	    </td>
           </tr>
           <tr bgcolor="#ffffe6">
@@ -3532,8 +3775,8 @@ sub scantron_selectphase {
             </td>
           </tr>
         </table>
-       </form>
-      </td>
+       </td>
+     </form>
     </tr>
 SCANTRONFORM
    
@@ -3589,8 +3832,8 @@ SCANTRONFORM
     }
     $r->print(<<SCANTRONFORM);
     <tr>
-      <td bgcolor="#777777">
-        <form action='/adm/grades' name='scantron_download'>
+      <form action='/adm/grades' name='scantron_download'>
+        <td bgcolor="#777777">
           <input type="hidden" name="command" value="scantron_download" />
           <table width="100%" border="0">
             <tr bgcolor="#e6ffff">
@@ -3602,29 +3845,18 @@ SCANTRONFORM
               <td> Filename of scoring office file: </td><td> $file_selector </td>
             </tr>
             <tr bgcolor="#ffffe6">
-	      <td>
-                Records to download
-              </td>
-              <td>
-                  <input type="radio" name="scantron_options" value="download_skipped"/> Skipped Records <br />
-                  <input type="radio" name="scantron_options" value="download_corrected"/> Corrected Records <br />
-                  <input checked="on" type="radio" name="scantron_options" value="dowload_orig"/> Original Records
-              </td>
-            </tr>
-            <tr bgcolor="#ffffe6">
               <td colspan="2">
-                <input type="submit" value="Validate Scantron Records" />
+                <input type="submit" value="Show List of Files" />
               </td>
             </tr>
           </table>
-        </form>
-      </td>
+        </td>
+      </form>
     </tr>
 SCANTRONFORM
 
     $r->print(<<SCANTRONFORM);
   </table>
-</form>
 $grading_menu_button
 SCANTRONFORM
 
@@ -3773,25 +4005,49 @@ sub scantron_parse_scanline {
 	my $currentquest=substr($questions,0,$$scantron_config{'Qlength'});
 	substr($questions,0,$$scantron_config{'Qlength'})='';
 	if (length($currentquest) < $$scantron_config{'Qlength'}) { next; }
-	my @array=split($$scantron_config{'Qon'},$currentquest,-1);
-	if (length($array[0]) eq $$scantron_config{'Qlength'}) {
-	    $record{"scantron.$questnum.answer"}='';
-	    if (!&scan_data($scan_data,"$whichline.no_bubble.$questnum")) {
-		push(@{$record{"scantron.missingerror"}},$questnum);
- 	    }
+	if ($$scantron_config{'Qon'} eq 'letter') {
+	    if (!$currentquest || $currentquest eq $$scantron_config{'Qoff'} ||
+		$currentquest !~ /^[A-Z]$/) {
+		$record{"scantron.$questnum.answer"}='';
+		if (!&scan_data($scan_data,"$whichline.no_bubble.$questnum")) {
+		    push(@{$record{"scantron.missingerror"}},$questnum);
+		}
+	    } else {
+		$record{"scantron.$questnum.answer"}=$currentquest;
+	    }
+	} elsif ($$scantron_config{'Qon'} eq 'number') {
+	    if (!$currentquest || $currentquest eq $$scantron_config{'Qoff'} ||
+		$currentquest !~ /^\d$/) {
+		$record{"scantron.$questnum.answer"}='';
+		if (!&scan_data($scan_data,"$whichline.no_bubble.$questnum")) {
+		    push(@{$record{"scantron.missingerror"}},$questnum);
+		}
+	    } else {
+		$record{"scantron.$questnum.answer"}=
+		    $alphabet[$currentquest-1];
+	    }
 	} else {
-	    $record{"scantron.$questnum.answer"}=$alphabet[length($array[0])];
+	    my @array=split($$scantron_config{'Qon'},$currentquest,-1);
+	    if (length($array[0]) eq $$scantron_config{'Qlength'}) {
+		$record{"scantron.$questnum.answer"}='';
+		if (!&scan_data($scan_data,"$whichline.no_bubble.$questnum")) {
+		    push(@{$record{"scantron.missingerror"}},$questnum);
+		}
+	    } else {
+		$record{"scantron.$questnum.answer"}=
+		    $alphabet[length($array[0])];
+	    }
+	    if (scalar(@array) gt 2) {
+		push(@{$record{'scantron.doubleerror'}},$questnum);
+		my @ans=@array;
+		my $i=length($ans[0]);shift(@ans);
+		while ($#ans) {
+		    $i+=length($ans[0])+1;
+		    $record{"scantron.$questnum.answer"}.=$alphabet[$i];
+		    shift(@ans);
+		}
+	    }
 	}
- 	if (scalar(@array) gt 2) {
- 	    push(@{$record{'scantron.doubleerror'}},$questnum);
- 	    my @ans=@array;
- 	    my $i=length($ans[0]);shift(@ans);
-	    while ($#ans) {
- 		$i+=length($ans[0])+1;
- 		$record{"scantron.$questnum.answer"}.=$alphabet[$i];
- 		shift(@ans);
- 	    }
- 	}
     }
     $record{'scantron.maxquest'}=$questnum;
     return \%record;
@@ -3821,7 +4077,8 @@ sub scantron_find_student {
 
 sub scantron_filter {
     my ($curres)=@_;
-    if (ref($curres) && $curres->is_problem() && !$curres->randomout) {
+                        # randomout is dysfunctional at best for this purpose
+    if (ref($curres) && $curres->is_problem()) { #&& !$curres->randomout) {
 	return 1;
     }
     return 0;
@@ -3833,7 +4090,7 @@ sub scantron_process_corrections {
     my ($scanlines,$scan_data)=&scantron_getfile();
     my $classlist=&Apache::loncoursedata::get_classlist();
     my $which=$ENV{'form.scantron_line'};
-    my $line=&scantron_get_line($scanlines,$which);
+    my $line=&scantron_get_line($scanlines,$scan_data,$which);
     my ($skip,$err,$errmsg);
     if ($ENV{'form.scantron_skip_record'}) {
 	$skip=1;
@@ -3879,43 +4136,155 @@ sub scantron_process_corrections {
     if ($err) {
 	$r->print("Unable to accept last correction, an error occurred :$errmsg:");
     } else {
-	&scantron_put_line($scanlines,$which,$line,$skip);
+	&scantron_put_line($scanlines,$scan_data,$which,$line,$skip);
 	&scantron_putfile($scanlines,$scan_data);
     }
 }
 
+sub reset_skipping_status {
+    my ($scanlines,$scan_data)=&scantron_getfile();
+    &scan_data($scan_data,'remember_skipping',undef,1);
+    &scantron_putfile(undef,$scan_data);
+}
 
-sub scantron_validate_file {
-    my ($r) = @_;
+sub allow_skipping {
+    my ($scan_data,$i)=@_;
+    my %remembered=split(':',&scan_data($scan_data,'remember_skipping'));
+    delete($remembered{$i});
+    &scan_data($scan_data,'remember_skipping',join(':',%remembered));
+}
+
+sub should_be_skipped {
+    my ($scan_data,$i)=@_;
+    if ($ENV{'form.scantron_options_redo'} !~ /^redo_/) {
+	# not redoing old skips
+	return 0;
+    }
+    my %remembered=split(':',&scan_data($scan_data,'remember_skipping'));
+    if (exists($remembered{$i})) { return 0; }
+    return 1;
+}
+
+sub remember_current_skipped {
+    my ($scanlines,$scan_data)=&scantron_getfile();
+    my %to_remember;
+    for (my $i=0;$i<=$scanlines->{'count'};$i++) {
+	if ($scanlines->{'skipped'}[$i]) {
+	    $to_remember{$i}=1;
+	}
+    }
+    &Apache::lonnet::logthis('remembering '.join(':',%to_remember));
+    &scan_data($scan_data,'remember_skipping',join(':',%to_remember));
+    &scantron_putfile(undef,$scan_data);
+}
+
+sub check_for_error {
+    my ($r,$result)=@_;
+    if ($result ne 'ok' && $result ne 'not_found' ) {
+	$r->print("An error occured ($result) when trying to Remove the existing corrections.");
+    }
+}
+
+sub scantron_warning_screen {
+    my ($button_text)=@_;
+    my $title=&Apache::lonnet::gettitle($ENV{'form.selectpage'});
+    return (<<STUFF);
+<p>
+<font color="red">Please double check the information
+                 below before clicking on '$button_text'</font>
+</p>
+<table>
+<tr><td><b>Sequence To be Graded:</b></td><td>$title</td></tr>
+<tr><td><b>Data File that will be used:</b></td><td><tt>$ENV{'form.scantron_selectfile'}</tt></td></tr>
+</table>
+</font>
+<br />
+<p> If this information is correct, please click on '$button_text'.</p>
+<p> If something is incorrect, please click the 'Grading Menu' button to start over.</p>
+
+<br />
+STUFF
+}
+
+sub scantron_do_warning {
+    my ($r)=@_;
     my ($symb,$url)=&get_symb_and_url($r);
     if (!$symb) {return '';}
     my $default_form_data=&defaultFormData($symb,$url);
-    if ($ENV{'form.scantron_options_ignore'} eq 'ignore_corrections') {
-	my $result=&scantron_remove('corrected');
-	if ($result ne 'ok' && $result ne 'not_found' ) {
-	    $r->print("An error occured ($result) when trying to Remove the existing corrections.");
-	}
-	$ENV{'form.scantron_options_ignore'}='done';
-    }
-    if ($ENV{'form.scantron_corrections'}) {
-	&scantron_process_corrections($r);
+    $r->print(&scantron_form_start().$default_form_data);
+    if ( $ENV{'form.selectpage'} eq '' ||
+	 $ENV{'form.scantron_selectfile'} eq '' ||
+	 $ENV{'form.scantron_format'} eq '' ) {
+	$r->print("<p>You have forgetten to specify some information. Please go Back and try again.</p>");
+	if ( $ENV{'form.selectpage'} eq '') {
+	    $r->print('<p><font color="red">You have not selected a Sequence to grade</font></p>');
+	} 
+	if ( $ENV{'form.scantron_selectfile'} eq '') {
+	    $r->print('<p><font color="red">You have not selected a file that contains the student\'s response data.</font></p>');
+	} 
+	if ( $ENV{'form.scantron_format'} eq '') {
+	    $r->print('<p><font color="red">You have not selected a the format of the student\'s response data.</font></p>');
+	} 
+    } else {
+	my $warning=&scantron_warning_screen('Validate Records');
+	$r->print(<<STUFF);
+$warning
+<input type="submit" name="submit" value="Validate Records" />
+<input type="hidden" name="command" value="scantron_validate" />
+STUFF
     }
-    $r->print("<p>Gathering neccessary info.</p>");$r->rflush();
-    my $max_bubble=&scantron_get_maxbubble($r);
-    #get the student pick code ready
-    $r->print(&Apache::loncommon::studentbrowser_javascript());
+    $r->print("</form><br />".&show_grading_menu_form($symb,$url)."</body></html>");
+    return '';
+}
+
+sub scantron_form_start {
+    my ($max_bubble)=@_;
     my $result= <<SCANTRONFORM;
 <form method="post" enctype="multipart/form-data" action="/adm/grades" name="scantronupload">
   <input type="hidden" name="selectpage" value="$ENV{'form.selectpage'}" />
   <input type="hidden" name="scantron_format" value="$ENV{'form.scantron_format'}" />
   <input type="hidden" name="scantron_selectfile" value="$ENV{'form.scantron_selectfile'}" />
-  <input type="hidden" name="scantron_maxbubble" value="$max_bubble'" />
+  <input type="hidden" name="scantron_maxbubble" value="$max_bubble" />
   <input type="hidden" name="scantron_CODElist" value="$ENV{'form.scantron_CODElist'}" />
   <input type="hidden" name="scantron_CODEunique" value="$ENV{'form.scantron_CODEunique'}" />
   <input type="hidden" name="scantron_options_redo" value="$ENV{'form.scantron_options_redo'}" />
   <input type="hidden" name="scantron_options_ignore" value="$ENV{'form.scantron_options_ignore'}" />
-  $default_form_data
 SCANTRONFORM
+    return $result;
+}
+
+sub scantron_validate_file {
+    my ($r) = @_;
+    my ($symb,$url)=&get_symb_and_url($r);
+    if (!$symb) {return '';}
+    my $default_form_data=&defaultFormData($symb,$url);
+    
+    # do the detection of only doing skipped records first befroe we delete
+    # them  when doing the corrections reset
+    if ($ENV{'form.scantron_options_redo'} ne 'redo_skipped_ready') {
+	&reset_skipping_status();
+    }
+    if ($ENV{'form.scantron_options_redo'} eq 'redo_skipped') {
+	&remember_current_skipped();
+	&scantron_remove_file('skipped');
+	$ENV{'form.scantron_options_redo'}='redo_skipped_ready';
+    }
+
+    if ($ENV{'form.scantron_options_ignore'} eq 'ignore_corrections') {
+	&check_for_error($r,&scantron_remove_file('corrected'));
+	&check_for_error($r,&scantron_remove_file('skipped'));
+	&check_for_error($r,&scantron_remove_scan_data());
+	$ENV{'form.scantron_options_ignore'}='done';
+    }
+
+    if ($ENV{'form.scantron_corrections'}) {
+	&scantron_process_corrections($r);
+    }
+    $r->print("<p>Gathering neccessary info.</p>");$r->rflush();
+    #get the student pick code ready
+    $r->print(&Apache::loncommon::studentbrowser_javascript());
+    my $max_bubble=&scantron_get_maxbubble($r);
+    my $result=&scantron_form_start($max_bubble).$default_form_data;
     $r->print($result);
     
     my @validate_phases=( 'ID',
@@ -3938,9 +4307,14 @@ SCANTRONFORM
 	}
     }
     if (!$stop) {
-	$r->print("Validation process complete.<br />");
-	$r->print('<input type="submit" name="submit" value="Start Grading" />');
-	$r->print('<input type="hidden" name="command" value="scantron_process" />');
+	my $warning=&scantron_warning_screen('Start Grading');
+	$r->print(<<STUFF);
+Validation process complete.<br />
+$warning
+<input type="submit" name="submit" value="Start Grading" />
+<input type="hidden" name="command" value="scantron_process" />
+STUFF
+
     } else {
 	$r->print('<input type="hidden" name="command" value="scantron_validate" />');
 	$r->print("<input type='hidden' name='validatepass' value='".$currentphase."' />");
@@ -3956,35 +4330,44 @@ SCANTRONFORM
     return '';
 }
 
-sub scantron_remove {
+sub scantron_remove_file {
     my ($which)=@_;
     my $cname=$ENV{'course.'.$ENV{'request.course.id'}.'.num'};
     my $cdom=$ENV{'course.'.$ENV{'request.course.id'}.'.domain'};
     my $file='scantron_';
-    if ($which eq 'corrected') {
-	$file.='corrected_';
+    if ($which eq 'corrected' || $which eq 'skipped') {
+	$file.=$which.'_';
     } else {
 	return 'refused';
     }
     $file.=$ENV{'form.scantron_selectfile'};
-    my $result=&Apache::lonnet::removeuserfile($cname,$cdom,$file);
+    return &Apache::lonnet::removeuserfile($cname,$cdom,$file);
+}
+
+sub scantron_remove_scan_data {
+    my $cname=$ENV{'course.'.$ENV{'request.course.id'}.'.num'};
+    my $cdom=$ENV{'course.'.$ENV{'request.course.id'}.'.domain'};
     my @keys=&Apache::lonnet::getkeys('nohist_scantrondata',$cdom,$cname);
     my @todelete;
     my $filename=$ENV{'form.scantron_selectfile'};
     foreach my $key (@keys) {
 	if ($key=~/^\Q$filename\E_/) {
+	    if ($ENV{'form.scantron_options_redo'} eq 'redo_skipped_ready' &&
+		$key=~/remember_skipping/) {
+		next;
+	    }
 	    push(@todelete,$key);
 	}
     }
+    my $result;
     if (@todelete) {
-	&Apache::lonnet::del('nohist_scantrondata',\@todelete,$cdom,$cname);
+	$result=&Apache::lonnet::del('nohist_scantrondata',\@todelete,$cdom,$cname);
     }
     return $result;
 }
 
 sub scantron_getfile {
-    #FIXME really would prefer a scantron directory but tokenwrapper
-    # doesn't allow access to subdirs of userfiles
+    #FIXME really would prefer a scantron directory
     my $cname=$ENV{'course.'.$ENV{'request.course.id'}.'.num'};
     my $cdom=$ENV{'course.'.$ENV{'request.course.id'}.'.domain'};
     my $lines;
@@ -4027,34 +4410,48 @@ sub lonnet_putfile {
 
 sub scantron_putfile {
     my ($scanlines,$scan_data) = @_;
-    #FIXME really would prefer a scantron directory but tokenwrapper
-    # doesn't allow access to subdirs of userfiles
+    #FIXME really would prefer a scantron directory
     my $cname=$ENV{'course.'.$ENV{'request.course.id'}.'.num'};
     my $cdom=$ENV{'course.'.$ENV{'request.course.id'}.'.domain'};
-    my $prefix='scantron_';
+    if ($scanlines) {
+	my $prefix='scantron_';
 # no need to update orig, shouldn't change
 #   &lonnet_putfile(join("\n",@{$scanlines->{'orig'}}),$prefix.'orig_'.
 #		    $ENV{'form.scantron_selectfile'});
-    &lonnet_putfile(join("\n",@{$scanlines->{'corrected'}}),
-		    $prefix.'corrected_'.
-		    $ENV{'form.scantron_selectfile'});
-    &lonnet_putfile(join("\n",@{$scanlines->{'skipped'}}),
-		    $prefix.'skipped_'.
-		    $ENV{'form.scantron_selectfile'});
+	&lonnet_putfile(join("\n",@{$scanlines->{'corrected'}}),
+			$prefix.'corrected_'.
+			$ENV{'form.scantron_selectfile'});
+	&lonnet_putfile(join("\n",@{$scanlines->{'skipped'}}),
+			$prefix.'skipped_'.
+			$ENV{'form.scantron_selectfile'});
+    }
     &Apache::lonnet::put('nohist_scantrondata',$scan_data,$cdom,$cname);
 }
 
 sub scantron_get_line {
-    my ($scanlines,$i)=@_;
-    if ($scanlines->{'skipped'}[$i]) {return undef;}
+    my ($scanlines,$scan_data,$i)=@_;
+    if (&should_be_skipped($scan_data,$i)) { return undef; }
+    if ($scanlines->{'skipped'}[$i]) { return undef; }
     if ($scanlines->{'corrected'}[$i]) {return $scanlines->{'corrected'}[$i];}
     return $scanlines->{'orig'}[$i]; 
 }
 
+sub get_todo_count {
+    my ($scanlines,$scan_data)=@_;
+    my $count=0;
+    for (my $i=0;$i<=$scanlines->{'count'};$i++) {
+	my $line=&scantron_get_line($scanlines,$scan_data,$i);
+	if ($line=~/^[\s\cz]*$/) { next; }
+	$count++;
+    }
+    return $count;
+}
+
 sub scantron_put_line {
-    my ($scanlines,$i,$newline,$skip)=@_;
+    my ($scanlines,$scan_data,$i,$newline,$skip)=@_;
     if ($skip) {
 	$scanlines->{'skipped'}[$i]=$newline;
+	&allow_skipping($scan_data,$i);
 	return;
     }
     $scanlines->{'corrected'}[$i]=$newline;
@@ -4073,7 +4470,7 @@ sub scantron_validate_ID {
 
     my %found=('ids'=>{},'usernames'=>{});
     for (my $i=0;$i<=$scanlines->{'count'};$i++) {
-	my $line=&scantron_get_line($scanlines,$i);
+	my $line=&scantron_get_line($scanlines,$scan_data,$i);
 	if ($line=~/^[\s\cz]*$/) { next; }
 	my $scan_record=&scantron_parse_scanline($line,$i,\%scantron_config,
 						 $scan_data);
@@ -4137,6 +4534,12 @@ sub scantron_get_correction {
 	$r->print(" in scanline $i <pre>".
 		  $line."</pre> \n");
     }
+    my $message="<p>The ID on the form is  <tt>".
+	$$scan_record{'scantron.ID'}."</tt><br />\n".
+	"The name on the paper is ".
+	$$scan_record{'scantron.LastName'}.",".
+	$$scan_record{'scantron.FirstName'}."</p>";
+
     $r->print('<input type="hidden" name="scantron_corrections" value="'.$error.'" />'."\n");
     $r->print('<input type="hidden" name="scantron_line" value="'.$i.'" />'."\n");
     if ($error =~ /ID$/) {
@@ -4145,11 +4548,7 @@ sub scantron_get_correction {
 	} elsif ($error eq 'duplicateID') {
 	    $r->print("The encoded ID has also been used by a previous paper $arg</p>\n");
 	}
-	$r->print("<p>The ID on the form is  <tt>".
-		  $$scan_record{'scantron.ID'}."</tt><br />\n");
-	$r->print("The name on the paper is ".
-		  $$scan_record{'scantron.LastName'}.",".
-		  $$scan_record{'scantron.FirstName'}."</p>");
+	$r->print($message);
 	$r->print("<p>How should I handle this? <br /> \n");
 	$r->print("\n<ul><li> ");
 	#FIXME it would be nice if this sent back the user ID and
@@ -4167,13 +4566,9 @@ sub scantron_get_correction {
 	} elsif ($error eq 'duplicateCODE') {
 	    $r->print("</p><p>The encoded CODE has also been used by a previous paper ".join(', ',@{$arg}).", and CODEs are supposed to be unique</p>\n");
 	}
-	$r->print("<p>The CODE on the form is  <tt>".
-		  $$scan_record{'scantron.CODE'}."</tt><br />\n");
-	$r->print("<p>The ID on the form is  <tt>".
-		  $$scan_record{'scantron.ID'}."</tt><br />\n");
-	$r->print("The name on the paper is ".
-		  $$scan_record{'scantron.LastName'}.",".
-		  $$scan_record{'scantron.FirstName'}."</p>");
+	$r->print("<p>The CODE on the form is  <tt>'".
+		  $$scan_record{'scantron.CODE'}."'</tt><br />\n");
+	$r->print($message);
 	$r->print("<p>How should I handle this? <br /> \n");
 	$r->print("\n<br /> ");
 	my $i=0;
@@ -4216,6 +4611,7 @@ ENDSCRIPT
 	$r->print("<p>There have been multiple bubbles scanned for a some question(s)</p>\n");
 	$r->print('<input type="hidden" name="scantron_questions" value="'.
 		  join(',',@{$arg}).'" />');
+	$r->print($message);
 	$r->print("<p>Please indicate which bubble should be used for grading</p>");
 	foreach my $question (@{$arg}) {
 	    my $selected=$$scan_record{"scantron.$question.answer"};
@@ -4223,6 +4619,7 @@ ENDSCRIPT
 	}
     } elsif ($error eq 'missingbubble') {
 	$r->print("<p>There have been <b>no</b> bubbles scanned for some question(s)</p>\n");
+	$r->print($message);
 	$r->print("<p>Please indicate which bubble should be used for grading</p>");
 	$r->print("Some questions have no scanned bubbles\n");
 	$r->print('<input type="hidden" name="scantron_questions" value="'.
@@ -4308,19 +4705,27 @@ sub scantron_validate_CODE {
 
     my ($scanlines,$scan_data)=&scantron_getfile();
     for (my $i=0;$i<=$scanlines->{'count'};$i++) {
-	my $line=&scantron_get_line($scanlines,$i);
+	my $line=&scantron_get_line($scanlines,$scan_data,$i);
 	if ($line=~/^[\s\cz]*$/) { next; }
 	my $scan_record=&scantron_parse_scanline($line,$i,\%scantron_config,
 						 $scan_data);
 	my $CODE=$$scan_record{'scantron.CODE'};
 	my $error=0;
-	if (!exists($allcodes{$CODE}) && !$$scan_record{'scantron.useCODE'}) {
+	if (!&Apache::lonnet::validCODE($CODE)) {
+	    &scantron_get_correction($r,$i,$scan_record,
+				     \%scantron_config,
+				     $line,'incorrectCODE',\%allcodes);
+	    return(1,$currentphase);
+	}
+	if (%allcodes && !exists($allcodes{$CODE}) 
+	    && !$$scan_record{'scantron.useCODE'}) {
 	    &scantron_get_correction($r,$i,$scan_record,
 				     \%scantron_config,
 				     $line,'incorrectCODE',\%allcodes);
 	    return(1,$currentphase);
 	}
-	if (exists($usedCODEs{$CODE}) && $ENV{'form.scantron_CODEunique'}
+	if (exists($usedCODEs{$CODE}) 
+	    && $ENV{'form.scantron_CODEunique'} eq 'yes'
 	    && !$$scan_record{'scantron.CODE_ignore_dup'}) {
 	    &scantron_get_correction($r,$i,$scan_record,
 				     \%scantron_config,
@@ -4342,7 +4747,7 @@ sub scantron_validate_doublebubble {
     my %scantron_config=&get_scantron_config($ENV{'form.scantron_format'});
     my ($scanlines,$scan_data)=&scantron_getfile();
     for (my $i=0;$i<=$scanlines->{'count'};$i++) {
-	my $line=&scantron_get_line($scanlines,$i);
+	my $line=&scantron_get_line($scanlines,$scan_data,$i);
 	if ($line=~/^[\s\cz]*$/) { next; }
 	my $scan_record=&scantron_parse_scanline($line,$i,\%scantron_config,
 						 $scan_data);
@@ -4368,7 +4773,7 @@ sub scantron_get_maxbubble {
     my @resources=$navmap->retrieveResources($map,\&scantron_filter,1,0);
     &Apache::lonnet::delenv('form.counter');
     foreach my $resource (@resources) {
-	my $result=&Apache::lonnet::ssi($resource->src());
+	my $result=&Apache::lonnet::ssi($resource->src().'?symb='.&Apache::lonnet::escape($resource->symb()));
     }
     &Apache::lonnet::delenv('scantron\.');
     my $envfile=$ENV{'user.environment'};
@@ -4392,7 +4797,7 @@ sub scantron_validate_missingbubbles {
     my $max_bubble=&scantron_get_maxbubble();
     if (!$max_bubble) { $max_bubble=2**31; }
     for (my $i=0;$i<=$scanlines->{'count'};$i++) {
-	my $line=&scantron_get_line($scanlines,$i);
+	my $line=&scantron_get_line($scanlines,$scan_data,$i);
 	if ($line=~/^[\s\cz]*$/) { next; }
 	my $scan_record=&scantron_parse_scanline($line,$i,\%scantron_config,
 						 $scan_data);
@@ -4437,19 +4842,25 @@ SCANTRONFORM
     my @delayqueue;
     my %completedstudents;
     
+    my $count=&get_todo_count($scanlines,$scan_data);
     my %prog_state=&Apache::lonhtmlcommon::Create_PrgWin($r,'Scantron Status',
- 				    'Scantron Progress',$scanlines->{'count'},
+ 				    'Scantron Progress',$count,
 				    'inline',undef,'scantronupload');
     &Apache::lonhtmlcommon::Update_PrgWin($r,\%prog_state,
 					  'Processing first student');
     my $start=&Time::HiRes::time();
     my $i=-1;
-    my ($uname,$udom);
+    my ($uname,$udom,$started);
     while ($i<$scanlines->{'count'}) {
  	($uname,$udom)=('','');
  	$i++;
- 	my $line=&scantron_get_line($scanlines,$i);
+ 	my $line=&scantron_get_line($scanlines,$scan_data,$i);
  	if ($line=~/^[\s\cz]*$/) { next; }
+	if ($started) {
+	    &Apache::lonhtmlcommon::Increment_PrgWin($r,\%prog_state,
+						     'last student');
+	}
+	$started=1;
  	my $scan_record=&scantron_parse_scanline($line,$i,\%scantron_config,
  						 $scan_data);
  	unless ($uname=&scantron_find_student($scan_record,$scan_data,
@@ -4479,23 +4890,27 @@ SCANTRONFORM
 	    if (exists($scan_record->{'scantron.CODE'}) &&
 		$scan_record->{'scantron.CODE'}) {
 		$form{'CODE'}=$scan_record->{'scantron.CODE'};
+	    } else {
+		$form{'CODE'}='';
 	    }
 	    my $result=&Apache::lonnet::ssi($resource->src(),%form);
-
+	    if ($result ne '') {
+		&Apache::lonnet::logthis("scantron grading error -> $result");
+		&Apache::lonnet::logthis("scantron grading error info name $uname domain $udom course $ENV{'request.course.id'} url ".$resource->src());
+	    }
+	    if (&Apache::loncommon::connection_aborted($r)) { last; }
 	}
 	$completedstudents{$uname}={'line'=>$line};
+	if (&Apache::loncommon::connection_aborted($r)) { last; }
     } continue {
 	&Apache::lonnet::delenv('form.counter');
 	&Apache::lonnet::delenv('scantron\.');
-	&Apache::lonhtmlcommon::Increment_PrgWin($r,\%prog_state,
-						 'last student');
     }
     &Apache::lonhtmlcommon::Close_PrgWin($r,\%prog_state);
 #    my $lasttime = &Time::HiRes::time()-$start;
 #    $r->print("<p>took $lasttime</p>");
 
-    $navmap->untieHashes();
-    $r->print("</form><p>Done</p>");
+    $r->print("</form>");
     $r->print(&show_grading_menu_form($symb,$url));
     return '';
 }
@@ -4555,7 +4970,8 @@ sub scantron_upload_scantron_data_save {
 	}
 	return '';
     }
-    $r->print("Doing upload to ".$ENV{'form.courseid'}." <br />");
+    my %coursedata=&Apache::lonnet::coursedescription($ENV{'form.domainid'}.'_'.$ENV{'form.courseid'});
+    $r->print("Doing upload to ".$coursedata{'description'}." <br />");
     my $home=&Apache::lonnet::homeserver($ENV{'form.courseid'},
 					 $ENV{'form.domainid'});
     my $fname=$ENV{'form.upfile.filename'};
@@ -4572,6 +4988,7 @@ sub scantron_upload_scantron_data_save {
     $fname=~s/[^\w\.\-]//g;
     # See if there is anything left
     unless ($fname) { return 'error: no uploaded file'; }
+    my $uploadedfile=$fname;
     $fname='scantron_orig_'.$fname;
     if (length($ENV{'form.upfile'}) < 2) {
 	$r->print("<font color='red'>Error:</font> The file you attempted to upload, <tt>".&HTML::Entities::encode($ENV{'form.upfile.filename'},'<>&"')."</tt>, contained no information. Please check that you entered the correct filename.");
@@ -4580,23 +4997,66 @@ sub scantron_upload_scantron_data_save {
 	if ($result =~ m|^/uploaded/|) {
 	    $r->print("<font color='green'>Success:</font> Successfully uploaded ".(length($ENV{'form.upfile'})-1)." bytes of data into location <tt>".$result."</tt>");
 	} else {
-	    $r->print("<font color='red'>Error:</font> An error (".$result.") occured when attempting to upload the file, <tt>".&HTML::Entities::encode($ENV{'form.upfile.filename'},'<>&"')."</tt>");
+	    $r->print("<font color='red'>Error:</font> An error (".$result.") occurred when attempting to upload the file, <tt>".&HTML::Entities::encode($ENV{'form.upfile.filename'},'<>&"')."</tt>");
 	}
     }
     if ($symb) {
-	$r->print(&show_grading_menu_form($symb,$url));
+	$r->print(&scantron_selectphase($r,$uploadedfile));
     } else {
 	$r->print($doanotherupload);
     }
     return '';
 }
 
+sub valid_file {
+    my ($requested_file)=@_;
+    foreach my $filename (sort(&scantron_filenames())) {
+	&Apache::lonnet::logthis("$requested_file  $filename");
+	if ($requested_file eq $filename) { return 1; }
+    }
+    return 0;
+}
+
+sub scantron_download_scantron_data {
+    my ($r)=@_;
+    my $default_form_data=&defaultFormData(&get_symb_and_url($r,1));
+    my $cname=$ENV{'course.'.$ENV{'request.course.id'}.'.num'};
+    my $cdom=$ENV{'course.'.$ENV{'request.course.id'}.'.domain'};
+    my $file=$ENV{'form.scantron_selectfile'};
+    if (! &valid_file($file)) {
+	$r->print(<<ERROR);
+	<p>
+	    The requested file name was invalid.
+        </p>
+ERROR
+	$r->print(&show_grading_menu_form(&get_symb_and_url($r,1)));
+	return;
+    }
+    my $orig='/uploaded/'.$cdom.'/'.$cname.'/scantron_orig_'.$file;
+    my $corrected='/uploaded/'.$cdom.'/'.$cname.'/scantron_corrected_'.$file;
+    my $skipped='/uploaded/'.$cdom.'/'.$cname.'/scantron_skipped_'.$file;
+    &Apache::lonnet::allowuploaded('/adm/grades',$orig);
+    &Apache::lonnet::allowuploaded('/adm/grades',$corrected);
+    &Apache::lonnet::allowuploaded('/adm/grades',$skipped);
+    $r->print(<<DOWNLOAD);
+    <p>
+	<a href="$orig">Original</a> file as uploaded by the scantron office.
+    </p>
+    <p>
+	<a href="$corrected">Corrections</a>, a file of corrected records that were used in grading.
+    </p>
+    <p>
+	<a href="$skipped">Skipped</a>, a file of records that were skipped.
+    </p>
+DOWNLOAD
+    $r->print(&show_grading_menu_form(&get_symb_and_url($r,1)));
+    return '';
+}
 
 #-------- end of section for handling grading scantron forms -------
 #
 #-------------------------------------------------------------------
 
-
 #-------------------------- Menu interface -------------------------
 #
 #--- Show a Grading Menu button - Calls the next routine ---
@@ -4649,6 +5109,7 @@ sub gradingmenu {
 	    if (!checkReceiptNo(formname,'notOK')) { return false;}
 	    formname.submit();
 	}
+	if (val < 7) formname.submit();
     }
 
     function checkReceiptNo(formname,nospace) {
@@ -4701,13 +5162,10 @@ GRADINGMENUJS
 		($saveSec eq $_ ? 'selected="on"':'').'>'.$_.'</option>'."\n";
 	}
     }
-    $result.= '<option value="all" '.($saveSec eq 'all' ? 'selected="on"' : ''). '>all</select> &nbsp; ';
+    $result.= '<option value="all" '.($saveSec eq 'all' ? 'selected="on"' : ''). '>all</option></select> &nbsp; ';
 
     $result.=&mt('Student Status').':</b>'.&Apache::lonhtmlcommon::StatusOptions($saveStatus,undef,1,undef);
 
-    if (ref($sections) && (grep /no/,@$sections)) {
-	$result.='&nbsp;(Section "no" implies the students were not assigned a section.)<br />';
-    }
     $result.='</td></tr>';
 
     $result.='<tr bgcolor="#ffffe6"valign="top"><td>'.
@@ -4756,6 +5214,9 @@ GRADINGMENUJS
 	    '-<input type="text" name="receipt" size="4" onChange="javascript:checkReceiptNo(this.form,\'OK\')">'.
 	    '</td></tr>'."\n";
     } 
+    $result.='<tr bgcolor="#ffffe6"valign="top"><td colspan="2">'.
+	'<input type="button" onClick="javascript:this.form.action=\'/adm/helper/resettimes.helper\';this.form.submit();'.
+	'" value="'.&mt('Manage').'" /> access times.</td></tr>'."\n";
 
     $result.='</form></td></tr></table>'."\n".
 	'</td></tr></table>'."\n".
@@ -4855,9 +5316,9 @@ sub handler {
 	    $request->print(&csvupload($request));
 	} elsif ($command eq 'csvuploadmap' && $perm{'mgr'} ) {
 	    $request->print(&csvuploadmap($request));
-	} elsif ($command eq 'csvuploadassign' && $perm{'mgr'}) {
+	} elsif ($command eq 'csvuploadoptions' && $perm{'mgr'}) {
 	    if ($ENV{'form.associate'} ne 'Reverse Association') {
-		$request->print(&csvuploadassign($request));
+		$request->print(&csvuploadoptions($request));
 	    } else {
 		if ( $ENV{'form.upfile_associate'} ne 'reverse' ) {
 		    $ENV{'form.upfile_associate'} = 'reverse';
@@ -4866,10 +5327,12 @@ sub handler {
 		}
 		$request->print(&csvuploadmap($request));
 	    }
+	} elsif ($command eq 'csvuploadassign' && $perm{'mgr'} ) {
+	    $request->print(&csvuploadassign($request));
 	} elsif ($command eq 'scantron_selectphase' && $perm{'mgr'}) {
 	    $request->print(&scantron_selectphase($request));
- 	} elsif ($command eq 'scantron_validate' && $perm{'mgr'}) {
- 	    $request->print(&scantron_validate_file($request));
+ 	} elsif ($command eq 'scantron_warning' && $perm{'mgr'}) {
+ 	    $request->print(&scantron_do_warning($request));
 	} elsif ($command eq 'scantron_validate' && $perm{'mgr'}) {
 	    $request->print(&scantron_validate_file($request));
 	} elsif ($command eq 'scantron_process' && $perm{'mgr'}) {
@@ -4882,7 +5345,7 @@ sub handler {
  		 (&Apache::lonnet::allowed('usc',$ENV{'request.role.domain'})||
 		  &Apache::lonnet::allowed('usc',$ENV{'request.course.id'}))) {
  	    $request->print(&scantron_upload_scantron_data_save($request));
- 	} elsif ($command eq 'scantrondownload' &&
+ 	} elsif ($command eq 'scantron_download' &&
 		 &Apache::lonnet::allowed('usc',$ENV{'request.course.id'})) {
  	    $request->print(&scantron_download_scantron_data($request));
 	} elsif ($command) {
@@ -4907,8 +5370,7 @@ sub send_header {
 
 sub send_footer {
     my ($request)= @_;
-    $request->print('</body>');
-    $request->print(&Apache::lontexconvert::footer());
+    $request->print('</body></html>');
 }
 
 1;