--- loncom/interface/loncommon.pm	2016/05/03 22:33:52	1.1242
+++ loncom/interface/loncommon.pm	2016/09/05 01:46:07	1.1253
@@ -1,7 +1,7 @@
 # The LearningOnline Network with CAPA
 # a pile of common routines
 #
-# $Id: loncommon.pm,v 1.1242 2016/05/03 22:33:52 raeburn Exp $
+# $Id: loncommon.pm,v 1.1253 2016/09/05 01:46:07 raeburn Exp $
 #
 # Copyright Michigan State University Board of Trustees
 #
@@ -1094,6 +1094,9 @@ linked_select_forms takes the following
 =item * $onchangesecond, additional javascript call to execute for an onchange
         event for the second <select> tag
 
+=item * $suffix, to differentiate separate uses of select2data javascript
+        objects in a page.
+
 =back 
 
 Below is an example of such a hash.  Only the 'text', 'default', and 
@@ -1148,7 +1151,8 @@ sub linked_select_forms {
         $hashref,
         $menuorder,
         $onchangefirst,
-        $onchangesecond
+        $onchangesecond,
+        $suffix
         ) = @_;
     my $second = "document.$formname.$secondselectname";
     my $first = "document.$formname.$firstselectname";
@@ -1156,20 +1160,20 @@ sub linked_select_forms {
     my $result = '';
     $result.='<script type="text/javascript" language="JavaScript">'."\n";
     $result.="// <![CDATA[\n";
-    $result.="var select2data = new Object();\n";
+    $result.="var select2data${suffix} = new Object();\n";
     $" = '","';
     my $debug = '';
     foreach my $s1 (sort(keys(%$hashref))) {
-        $result.="select2data.d_$s1 = new Object();\n";        
-        $result.="select2data.d_$s1.def = new String('".
+        $result.="select2data${suffix}['d_$s1'] = new Object();\n";        
+        $result.="select2data${suffix}['d_$s1'].def = new String('".
             $hashref->{$s1}->{'default'}."');\n";
-        $result.="select2data.d_$s1.values = new Array(";
+        $result.="select2data${suffix}['d_$s1'].values = new Array(";
         my @s2values = sort(keys( %{ $hashref->{$s1}->{'select2'} } ));
         if (ref($hashref->{$s1}->{'order'}) eq 'ARRAY') {
             @s2values = @{$hashref->{$s1}->{'order'}};
         }
         $result.="\"@s2values\");\n";
-        $result.="select2data.d_$s1.texts = new Array(";        
+        $result.="select2data${suffix}['d_$s1'].texts = new Array(";        
         my @s2texts;
         foreach my $value (@s2values) {
             push @s2texts, $hashref->{$s1}->{'select2'}->{$value};
@@ -1179,19 +1183,17 @@ sub linked_select_forms {
     $"=' ';
     $result.= <<"END";
 
-function select1_changed() {
+function select1${suffix}_changed() {
     // Determine new choice
-    var newvalue = "d_" + $first.value;
+    var newvalue = "d_" + $first.options[$first.selectedIndex].value;
     // update select2
-    var values     = select2data[newvalue].values;
-    var texts      = select2data[newvalue].texts;
-    var select2def = select2data[newvalue].def;
+    var values     = select2data${suffix}[newvalue].values;
+    var texts      = select2data${suffix}[newvalue].texts;
+    var select2def = select2data${suffix}[newvalue].def;
     var i;
     // out with the old
-    for (i = 0; i < $second.options.length; i++) {
-        $second.options[i] = null;
-    }
-    // in with the nuclear
+    $second.options.length = 0;
+    // in with the new
     for (i=0;i<values.length; i++) {
         $second.options[i] = new Option(values[i]);
         $second.options[i].value = values[i];
@@ -1205,7 +1207,7 @@ function select1_changed() {
 </script>
 END
     # output the initial values for the selection lists
-    $result .= "<select size=\"1\" name=\"$firstselectname\" onchange=\"select1_changed();$onchangefirst\">\n";
+    $result .= "<select size=\"1\" name=\"$firstselectname\" onchange=\"select1${suffix}_changed();$onchangefirst\">\n";
     my @order = sort(keys(%{$hashref}));
     if (ref($menuorder) eq 'ARRAY') {
         @order = @{$menuorder};
@@ -1773,6 +1775,162 @@ RESIZE
 }
 
 sub colorfuleditor_js {
+    my $browse_or_search;
+    my $respath;
+    my ($cnum,$cdom) = &crsauthor_url();
+    if ($cnum) {
+        $respath = "/res/$cdom/$cnum/";
+        my %js_lt = &Apache::lonlocal::texthash(
+            sunm => 'Sub-directory name',
+            save => 'Save page to make this permanent',
+        );
+        &js_escape(\%js_lt);
+        $browse_or_search = <<"END";
+
+    function toggleChooser(form,element,titleid,only,search) {
+        var disp = 'none';
+        if (document.getElementById('chooser_'+element)) {
+            var curr = document.getElementById('chooser_'+element).style.display;
+            if (curr == 'none') {
+                disp='inline';
+                if (form.elements['chooser_'+element].length) {
+                    for (var i=0; i<form.elements['chooser_'+element].length; i++) {
+                        form.elements['chooser_'+element][i].checked = false;
+                    }
+                }
+                toggleResImport(form,element);
+            }
+            document.getElementById('chooser_'+element).style.display = disp;
+        }
+    }
+
+    function toggleCrsFile(form,element,numdirs) {
+        if (document.getElementById('chooser_'+element+'_crsres')) {
+            var curr = document.getElementById('chooser_'+element+'_crsres').style.display;
+            if (curr == 'none') {
+                if (numdirs) {
+                    form.elements['coursepath_'+element].selectedIndex = 0;
+                    if (numdirs > 1) {
+                        window['select1'+element+'_changed']();
+                    }
+                }
+            } 
+            document.getElementById('chooser_'+element+'_crsres').style.display = 'block';
+            
+        }
+        if (document.getElementById('chooser_'+element+'_upload')) {
+            document.getElementById('chooser_'+element+'_upload').style.display = 'none';
+            if (document.getElementById('uploadcrsres_'+element)) {
+                document.getElementById('uploadcrsres_'+element).value = '';
+            }
+        }
+        return;
+    }
+
+    function toggleCrsUpload(form,element,numcrsdirs) {
+        if (document.getElementById('chooser_'+element+'_crsres')) {
+            document.getElementById('chooser_'+element+'_crsres').style.display = 'none';
+        }
+        if (document.getElementById('chooser_'+element+'_upload')) {
+            var curr = document.getElementById('chooser_'+element+'_upload').style.display;
+            if (curr == 'none') {
+                if (numcrsdirs) {
+                   form.elements['crsauthorpath_'+element].selectedIndex = 0;
+                   form.elements['newsubdir_'+element][0].checked = true;
+                   toggleNewsubdir(form,element);
+                }
+            }
+            document.getElementById('chooser_'+element+'_upload').style.display = 'block';
+        }
+        return;
+    }
+
+    function toggleResImport(form,element) {
+        var choices = new Array('crsres','upload');
+        for (var i=0; i<choices.length; i++) {
+            if (document.getElementById('chooser_'+element+'_'+choices[i])) {
+                document.getElementById('chooser_'+element+'_'+choices[i]).style.display = 'none';
+            }
+        }
+    }
+
+    function toggleNewsubdir(form,element) {
+        var newsub = form.elements['newsubdir_'+element];
+        if (newsub) {
+            if (newsub.length) {
+                for (var j=0; j<newsub.length; j++) {
+                    if (newsub[j].checked) {
+                        if (document.getElementById('newsubdirname_'+element)) {
+                            if (newsub[j].value == '1') {
+                                document.getElementById('newsubdirname_'+element).type = "text";
+                                if (document.getElementById('newsubdir_'+element)) {
+                                    document.getElementById('newsubdir_'+element).innerHTML = '<br />$js_lt{sunm}';
+                                }
+                            } else {
+                                document.getElementById('newsubdirname_'+element).type = "hidden";
+                                document.getElementById('newsubdirname_'+element).value = "";
+                                document.getElementById('newsubdir_'+element).innerHTML = "";
+                            }
+                        }
+                        break; 
+                    }
+                }
+            }
+        }
+    }
+
+    function updateCrsFile(form,element) {
+        var directory = form.elements['coursepath_'+element];
+        var filename = form.elements['coursefile_'+element];
+        var path = directory.options[directory.selectedIndex].value;
+        var file = filename.options[filename.selectedIndex].value;
+        form.elements[element].value = '$respath';
+        if (path == '/') {
+            form.elements[element].value += file;
+        } else {
+            form.elements[element].value += path+'/'+file;
+        }
+        unClean();
+        if (document.getElementById('previewimg_'+element)) {
+            document.getElementById('previewimg_'+element).src = form.elements[element].value;
+            var newsrc = document.getElementById('previewimg_'+element).src; 
+        }
+        if (document.getElementById('showimg_'+element)) {
+            document.getElementById('showimg_'+element).innerHTML = '($js_lt{save})';
+        }
+        toggleChooser(form,element);
+        return;
+    }
+
+    function uploadDone(suffix,name) {
+        if (name) {
+	    document.forms["lonhomework"].elements[suffix].value = name;
+            unClean();
+            toggleChooser(document.forms["lonhomework"],suffix);
+        }
+    }
+
+\$(document).ready(function(){
+
+    \$(document).delegate('form :submit', 'click', function( event ) {
+        if ( \$( this ).hasClass( "LC_uploadcrsres" ) ) {
+            var buttonId = this.id;
+            var suffix = buttonId.toString();
+            suffix = suffix.replace(/^crsupload_/,'');
+            event.preventDefault();
+            document.lonhomework.target = 'crsupload_target_'+suffix;
+            document.lonhomework.action = '/adm/coursepub?LC_uploadcrsres='+suffix;
+            \$(this.form).submit();
+            document.lonhomework.target = '';
+            if (document.getElementById('crsuploadto_'+suffix)) {
+                document.lonhomework.action = document.getElementById('crsuploadto_'+suffix).value;
+            }
+            return false;
+        }
+    });
+});
+END
+    }
     return <<"COLORFULEDIT"
 <script type="text/javascript">
 // <![CDATA[>
@@ -1955,7 +2113,7 @@ sub colorfuleditor_js {
         }
     }
 
-
+$browse_or_search
 
 // ]]>
 </script>
@@ -2007,6 +2165,130 @@ sub insert_folding_button {
             value=\"".&mt('Hide')."\" onclick=\"fold_box('$curDepth','$lastresource')\">";
 }
 
+sub crsauthor_url {
+    my ($url) = @_;
+    if ($url eq '') {
+        $url = $ENV{'REQUEST_URI'};
+    }
+    my ($cnum,$cdom);
+    if ($env{'request.course.id'}) {
+        my ($audom,$auname) = ($url =~ m{^/priv/($match_domain)/($match_name)/});
+        if ($audom ne '' && $auname ne '') {
+            if (($env{'course.'.$env{'request.course.id'}.'.num'} eq $auname) &&
+                ($env{'course.'.$env{'request.course.id'}.'.domain'} eq $audom)) {
+                $cnum = $auname;
+                $cdom = $audom;
+            }
+        }
+    }
+    return ($cnum,$cdom);
+}
+
+sub import_crsauthor_form {
+    my ($form,$firstselectname,$secondselectname,$onchangefirst,$only,$suffix) = @_;
+    return (0) unless ($env{'request.course.id'});
+    my $cnum = $env{'course.'.$env{'request.course.id'}.'.num'};
+    my $cdom = $env{'course.'.$env{'request.course.id'}.'.domain'};
+    my $crshome = $env{'course.'.$env{'request.course.id'}.'.home'};
+    return (0) unless (($cnum ne '') && ($cdom ne ''));
+    my $londocroot = $Apache::lonnet::perlvar{'lonDocRoot'};
+    my @ids=&Apache::lonnet::current_machine_ids();
+    my ($output,$is_home,$relpath,%subdirs,%files,%selimport_menus);
+    
+    if (grep(/^\Q$crshome\E$/,@ids)) {
+        $is_home = 1;
+    }
+    $relpath = "/priv/$cdom/$cnum";
+    &Apache::lonnet::recursedirs($is_home,'priv',$londocroot,$relpath,'',\%subdirs,\%files);
+    my %lt = &Apache::lonlocal::texthash (
+        fnam => 'Filename',
+        dire => 'Directory',
+    );
+    my $numdirs = scalar(keys(%files));
+    my (%possexts,$singledir,@singledirfiles);
+    if ($only) {
+        map { $possexts{$_} = 1; } split(/\s*,\s*/,$only);
+    }
+    my (%nonemptydirs,$possdirs);
+    if ($numdirs > 1) {
+        my @order;
+        foreach my $key (sort { lc($a) cmp lc($b) } (keys(%files))) {
+            if (ref($files{$key}) eq 'HASH') {
+                my $shown = $key;
+                if ($key eq '') {
+                    $shown = '/';
+                }
+                my @ordered = ();
+                foreach my $file (sort { lc($a) cmp lc($b) } (keys(%{$files{$key}}))) {
+                    if ($only) {
+                        my ($ext) = ($file =~ /\.([^.]+)$/);
+                        unless ($possexts{lc($ext)}) {
+                            next;
+                        }
+                    }
+                    $selimport_menus{$key}->{'select2'}->{$file} = $file;
+                    push(@ordered,$file);
+                }
+                if (@ordered) {
+                    push(@order,$key);
+                    $nonemptydirs{$key} = 1;
+                    $selimport_menus{$key}->{'text'} = $shown;
+                    $selimport_menus{$key}->{'default'} = '';
+                    $selimport_menus{$key}->{'select2'}->{''} = '';
+                    $selimport_menus{$key}->{'order'} = \@ordered;
+                }
+            }
+        }
+        $possdirs = scalar(keys(%nonemptydirs));
+        if ($possdirs > 1) {
+            my @order = sort { lc($a) cmp lc($b) } (keys(%nonemptydirs));
+            $output = $lt{'dire'}.
+                      &linked_select_forms($form,'<br />'.
+                                           $lt{'fnam'},'',
+                                           $firstselectname,$secondselectname,
+                                           \%selimport_menus,\@order,
+                                           $onchangefirst,'',$suffix).'<br />';
+        } elsif ($possdirs == 1) {
+            $singledir = (keys(%nonemptydirs))[0];
+            if (ref($selimport_menus{$singledir}->{'order'}) eq 'ARRAY') {
+                @singledirfiles = @{$selimport_menus{$singledir}->{'order'}};
+            }
+            delete($selimport_menus{$singledir});
+        }
+    } elsif ($numdirs == 1) {
+        $singledir = (keys(%files))[0];
+        foreach my $file (sort { lc($a) cmp lc($b) } (keys(%{$files{$singledir}}))) {
+            if ($only) {
+                my ($ext) = ($file =~ /\.([^.]+)$/);
+                unless ($possexts{lc($ext)}) {
+                    next;
+                }
+            }
+            push(@singledirfiles,$file);
+        }
+        if (@singledirfiles) {
+            $possdirs == 1;
+        }
+    }
+    if (($possdirs == 1) && (@singledirfiles)) {
+        my $showdir = $singledir;
+        if ($singledir eq '') {
+            $showdir = '/';
+        }
+        $output = $lt{'dire'}.
+                  '<select name="'.$firstselectname.'">'.
+                  '<option value="'.$singledir.'">'.$showdir.'</option>'."\n".
+                  '</select><br />'.
+                  $lt{'fnam'}.'<select name="'.$secondselectname.'">'."\n".
+                  '<option value="" selected="selected">'.$lt{'se'}.'</option>'."\n";
+        foreach my $file (@singledirfiles) {
+            $output .= '<option value="'.$file.'">'.$file.'</option>'."\n";
+        }
+        $output .= '</select><br />'."\n";
+    }
+    return ($possdirs,$output);
+}
+
 =pod
 
 =head1 Excel and CSV file utility routines
@@ -3872,7 +4154,11 @@ category
 
 sub filecategorytypes {
     my ($cat) = @_;
-    return @{$category_extensions{lc($cat)}};
+    if (ref($category_extensions{lc($cat)}) eq 'ARRAY') { 
+        return @{$category_extensions{lc($cat)}};
+    } else {
+        return ();
+    }
 }
 
 =pod
@@ -5020,7 +5306,7 @@ sub check_ip_acc {
         return 1;
     }
     my $allowed;
-    my $ip=$env{'request.host'} || $ENV{'REMOTE_ADDR'} || $clientip;
+    my $ip=$ENV{'REMOTE_ADDR'} || $clientip || $env{'request.host'};
 
     my $name;
     my %access = (
@@ -5424,10 +5710,20 @@ sub CSTR_pageheader {
         $lastitem = $thisdisfn;
     }
 
+    my ($crsauthor,$title);
+    if (($env{'request.course.id'}) &&
+        ($env{'course.'.$env{'request.course.id'}.'.num'} eq $uname) &&
+        ($env{'course.'.$env{'request.course.id'}.'.domain'} eq $udom)) {
+        $crsauthor = 1;
+        $title = &mt('Course Authoring Space');
+    } else {
+        $title = &mt('Authoring Space');
+    }
+
     my $output =
          '<div>'
         .&Apache::loncommon::help_open_menu('','',3,'Authoring') #FIXME: Broken? Where is it?
-        .'<b>'.&mt('Authoring Space:').'</b> '
+        .'<b>'.$title.'</b> '
         .'<form name="dirs" method="post" action="'.$formaction
         .'" target="_top">' #FIXME lonpubdir: target="_parent"
         .&Apache::lonhtmlcommon::crumbs($uname.'/'.$parentpath,'_top','/priv/'.$udom,undef,undef);
@@ -5438,13 +5734,18 @@ sub CSTR_pageheader {
             .$lastitem
             .'</span>';
     }
-    $output .=
-         '<br />'
-        #FIXME lonpubdir: &Apache::lonhtmlcommon::crumbs($uname.$thisdisfn.'/','_top','/priv','','+1',1)."</b></tt><br />"
-        .&Apache::lonhtmlcommon::select_recent('construct','recent','this.form.action=this.form.recent.value;this.form.submit()')
-        .'</form>'
-        .&Apache::lonmenu::constspaceform()
-        .'</div>';
+
+    if ($crsauthor) {
+        $output .= '</form>'.&Apache::lonmenu::constspaceform();
+    } else {
+        $output .=
+             '<br />'
+            #FIXME lonpubdir: &Apache::lonhtmlcommon::crumbs($uname.$thisdisfn.'/','_top','/priv','','+1',1)."</b></tt><br />"
+            .&Apache::lonhtmlcommon::select_recent('construct','recent','this.form.action=this.form.recent.value;this.form.submit()')
+            .'</form>'
+            .&Apache::lonmenu::constspaceform();
+    }
+    $output .= '</div>';
 
     return $output;
 }
@@ -5897,6 +6198,12 @@ div.LC_confirm_box .LC_success img {
   height: auto;
 }
 
+.LC_textsize_mobile {
+  \@media only screen and (max-device-width: 480px) {
+      -webkit-text-size-adjust:100%; -moz-text-size-adjust:100%; -ms-text-size-adjust:100%;
+  }
+}
+
 .LC_icon {
   border: none;
   vertical-align: middle;
@@ -6024,6 +6331,10 @@ table#LC_menubuttons img {
   vertical-align: middle;
 }
 
+.LC_breadcrumbs_hoverable {
+  background: $sidebg;
+}
+
 td.LC_table_cell_checkbox {
   text-align: center;
 }
@@ -9648,6 +9959,22 @@ sub get_secgrprole_info {
 sub user_picker {
     my ($dom,$srch,$forcenewuser,$caller,$cancreate,$usertype,$context) = @_;
     my $currdom = $dom;
+    my @alldoms = &Apache::lonnet::all_domains();
+    if (@alldoms == 1) {
+        my %domsrch = &Apache::lonnet::get_dom('configuration',
+                                               ['directorysrch'],$alldoms[0]);
+        my $domdesc = &Apache::lonnet::domain($alldoms[0],'description');
+        my $showdom = $domdesc;
+        if ($showdom eq '') {
+            $showdom = $dom;
+        }
+        if (ref($domsrch{'directorysrch'}) eq 'HASH') {
+            if ((!$domsrch{'directorysrch'}{'available'}) &&
+                ($domsrch{'directorysrch'}{'lcavailable'} eq '0')) {
+                return (&mt('LON-CAPA directory search is not available in domain: [_1]',$showdom),0);
+            }
+        }
+    }
     my %curr_selected = (
                         srchin => 'dom',
                         srchby => 'lastname',
@@ -9888,7 +10215,7 @@ END_BLOCK
                &Apache::lonhtmlcommon::row_closure(1). 
                &Apache::lonhtmlcommon::end_pick_box().
                '<br />';
-    return $output;
+    return ($output,1);
 }
 
 sub user_rule_check {
@@ -10314,7 +10641,9 @@ reservable_now - ref to hash of student_
 
     Keys in inner hash are:
     (a) symb: either blank or symb to which slot use is restricted.
-    (b) endreserve: end date of reservation period. 
+    (b) endreserve: end date of reservation period.
+    (c) uniqueperiod: start,end dates when slot is to be uniquely
+        selected.
 
 sorted_future - ref to array of student_schedulable slots reservable in
                 the future, ordered by start date of reservation period.
@@ -10324,7 +10653,9 @@ future_reservable - ref to hash of stude
 
     Keys in inner hash are:
     (a) symb: either blank or symb to which slot use is restricted.
-    (b) startreserve:  start date of reservation period.
+    (b) startreserve: start date of reservation period.
+    (c) uniqueperiod: start,end dates when slot is to be uniquely
+        selected.
 
 =back
 
@@ -10400,6 +10731,10 @@ sub get_future_slots {
             my $startreserve = $slots{$slot}->{'startreserve'};
             my $endreserve = $slots{$slot}->{'endreserve'};
             my $symb = $slots{$slot}->{'symb'};
+            my $uniqueperiod;
+            if (ref($slots{$slot}->{'uniqueperiod'}) eq 'ARRAY') {
+                $uniqueperiod = join(',',@{$slots{$slot}->{'uniqueperiod'}});
+            }
             if (($startreserve < $now) &&
                 (!$endreserve || $endreserve > $now)) {
                 my $lastres = $endreserve;
@@ -10408,13 +10743,15 @@ sub get_future_slots {
                 }
                 $reservable_now{$slot} = {
                                            symb       => $symb,
-                                           endreserve => $lastres
+                                           endreserve => $lastres,
+                                           uniqueperiod => $uniqueperiod,
                                          };
             } elsif (($startreserve > $now) &&
                      (!$endreserve || $endreserve > $startreserve)) {
                 $future_reservable{$slot} = {
                                               symb         => $symb,
-                                              startreserve => $startreserve
+                                              startreserve => $startreserve,
+                                              uniqueperiod => $uniqueperiod,
                                             };
             }
         }
@@ -10572,7 +10909,23 @@ sub get_env_multiple {
     return(@values);
 }
 
+# Looks at given dependencies, and returns something depending on the context.
+# For coursedocs paste, returns (undef, $counter, $numpathchg, \%existing).
+# For syllabus rewrites, returns (undef, $counter, $numpathchg, \%existing, \%mapping).
+# For all other contexts, returns ($output, $counter, $numpathchg).
+# $output: string with the HTML output. Can contain missing dependencies with an upload form, existing dependencies, and dependencies no longer in use.
+# $counter: integer with the number of existing dependencies when no HTML output is returned, and the number of missing dependencies when an HTML output is returned.
+# $numpathchg: integer with the number of cleaned up dependency paths.
+# \%existing: hash reference clean path -> 1 only for existing dependencies.
+# \%mapping: hash reference clean path -> original path for all dependencies.
+# @param {string} actionurl - The path to the handler, indicative of the context.
+# @param {string} state - Can contain HTML with hidden inputs that will be added to the output form.
+# @param {hash reference} allfiles - List of file info from lonnet::extract_embedded_items
+# @param {hash reference} codebase - undef, not modified by lonnet::extract_embedded_items ?
+# @param {hash reference} args - More parameters ! Possible keys: error_on_invalid_names (boolean), ignore_remote_references (boolean), current_path (string), docs_url (string), docs_title (string), context (string)
+# @return {Array} - array depending on the context (not a reference)
 sub ask_for_embedded_content {
+    # NOTE: documentation was added afterwards, it could be wrong
     my ($actionurl,$state,$allfiles,$codebase,$args)=@_;
     my (%subdependencies,%dependencies,%mapping,%existing,%newfiles,%pathchanges,
         %currsubfile,%unused,$rem);
@@ -10588,6 +10941,9 @@ sub ask_for_embedded_content {
     my $heading = &mt('Upload embedded files');
     my $buttontext = &mt('Upload');
 
+    # fills these variables based on the context:
+    # $navmap, $cdom, $cnum, $udom, $uname, $url, $toplevel, $getpropath,
+    # $path, $fileloc, $title, $rem, $filename
     if ($env{'request.course.id'}) {
         if ($actionurl eq '/adm/dependencies') {
             $navmap = Apache::lonnavmaps::navmap->new();
@@ -10672,6 +11028,16 @@ sub ask_for_embedded_content {
         $fileloc = &Apache::lonnet::filelocation('',$toplevel).'/';
         $fileloc =~ s{^/}{};
     }
+    
+    # parses the dependency paths to get some info
+    # fills $newfiles, $mapping, $subdependencies, $dependencies
+    # $newfiles: hash URL -> 1 for new files or external URLs
+    # (will be completed later)
+    # $mapping:
+    #   for external URLs: external URL -> external URL
+    #   for relative paths: clean path -> original path
+    # $subdependencies: hash clean path -> clean file name -> 1 for relative paths in subdirectories
+    # $dependencies: hash clean or not file name -> 1 for relative paths not in subdirectories
     foreach my $file (keys(%{$allfiles})) {
         my $embed_file;
         if (($path eq "/uploaded/$cdom/$cnum/portfolio/syllabus") && ($file =~ m{^\Q$path/\E(.+)$})) {
@@ -10714,6 +11080,19 @@ sub ask_for_embedded_content {
             }
         }
     }
+    
+    # looks for all existing files in dependency subdirectories (from $subdependencies filled above)
+    # and lists
+    # fills $currsubfile, $pathchanges, $existing, $numexisting, $newfiles, $unused
+    # $currsubfile: hash clean path -> file name -> 1 for all existing files in the path
+    # $pathchanges: hash clean path -> 1 if the file in subdirectory exists and
+    #                                    the path had to be cleaned up
+    # $existing: hash clean path -> 1 if the file exists
+    # $numexisting: number of keys in $existing
+    # $newfiles: updated with clean path -> 1 for files in subdirectories that do not exist
+    # $unused: only for /adm/dependencies, hash clean path -> 1 for existing files in
+    #                                      dependency subdirectories that are
+    #                                      not listed as dependencies, with some exceptions using $rem
     my $dirptr = 16384;
     foreach my $path (keys(%subdependencies)) {
         $currsubfile{$path} = {};
@@ -10789,6 +11168,9 @@ sub ask_for_embedded_content {
             }
         }
     }
+    
+    # fills $currfile, hash file name -> 1 or [$size,$mtime]
+    # for files in $url or $fileloc (target directory) in some contexts
     my %currfile;
     if (($actionurl eq '/adm/portfolio') ||
         ($actionurl eq '/adm/coursegrp_portfolio')) {
@@ -10827,6 +11209,8 @@ sub ask_for_embedded_content {
             }
         }
     }
+    # updates $pathchanges, $existing, $numexisting, $newfiles and $unused for files that
+    # are not in subdirectories, using $currfile
     foreach my $file (keys(%dependencies)) {
         if (exists($currfile{$file})) {
             unless ($mapping{$file} eq $file) {
@@ -10855,6 +11239,8 @@ sub ask_for_embedded_content {
             $unused{$file} = 1;
         }
     }
+    
+    # returns some results for coursedocs paste and syllabus rewrites ($output is undef)
     if (($actionurl eq '/adm/coursedocs') && (ref($args) eq 'HASH') &&
         ($args->{'context'} eq 'paste')) {
         $counter = scalar(keys(%existing));
@@ -10866,6 +11252,12 @@ sub ask_for_embedded_content {
         $numpathchg = scalar(keys(%pathchanges));
         return ($output,$counter,$numpathchg,\%existing,\%mapping);
     }
+    
+    # returns HTML otherwise, with dependency results and to ask for more uploads
+    
+    # $upload_output: missing dependencies (with upload form)
+    # $modify_output: uploaded dependencies (in use)
+    # $delete_output: files no longer in use (unused files are not listed for londocs, bug?)
     foreach my $embed_file (sort {lc($a) cmp lc($b)} keys(%newfiles)) {
         if ($actionurl eq '/adm/dependencies') {
             next if ($embed_file =~ m{^\w+://});
@@ -15125,6 +15517,9 @@ sub construct_course {
        if ($args->{'setcontent'}) {
            $cenv{'question.email'}=$args->{'ccuname'}.':'.$args->{'ccdomain'};
        }
+       if ($args->{'setcomment'}) {
+           $cenv{'comment.email'}=$args->{'ccuname'}.':'.$args->{'ccdomain'};
+       }
     }
     if ($args->{'reshome'}) {
 	$cenv{'reshome'}=$args->{'reshome'}.'/';
@@ -16790,7 +17185,7 @@ sub check_recaptcha {
 }
 
 sub emailusername_info {
-    my @fields = ('firstname','lastname','institution','web','location','officialemail');
+    my @fields = ('firstname','lastname','institution','web','location','officialemail','id');
     my %titles = &Apache::lonlocal::texthash (
                      lastname      => 'Last Name',
                      firstname     => 'First Name',
@@ -16798,6 +17193,7 @@ sub emailusername_info {
                      location      => "School's city, state/province, country",
                      web           => "School's web address",
                      officialemail => 'E-mail address at institution (if different)',
+                     id            => 'Student/Employee ID',
                  );
     return (\@fields,\%titles);
 }