--- loncom/interface/loncommon.pm	2008/03/06 21:42:51	1.645
+++ loncom/interface/loncommon.pm	2008/06/09 22:34:55	1.660
@@ -1,7 +1,7 @@
 # The LearningOnline Network with CAPA
 # a pile of common routines
 #
-# $Id: loncommon.pm,v 1.645 2008/03/06 21:42:51 raeburn Exp $
+# $Id: loncommon.pm,v 1.660 2008/06/09 22:34:55 raeburn Exp $
 #
 # Copyright Michigan State University Board of Trustees
 #
@@ -67,6 +67,7 @@ use Apache::loncoursedata();
 use Apache::lontexconvert();
 use Apache::lonclonecourse();
 use LONCAPA qw(:DEFAULT :match);
+use DateTime::TimeZone;
 
 # ---------------------------------------------- Designs
 use vars qw(%defaultdesign);
@@ -84,25 +85,40 @@ my $readit;
 
 =pod
 
-=head1 Server Side incliude with retries:
+=head1 Server Side include with retries:
 
 =over 4
 
-=item * ssi_with_retries(resource, retries form)
+=item * &ssi_with_retries(resource,retries form)
 
 Performs an ssi with some number of retries.  Retries continue either
 until the result is ok or until the retry count supplied by the
 caller is exhausted.  
 
 Inputs:
+
+=over 4
+
 resource   - Identifies the resource to insert.
+
 retries    - Count of the number of retries allowed.
+
 form       - Hash that identifies the rendering options.
 
-Returns: 
+=back
+
+Returns:
+
+=over 4
+
 content    - The content of the response.  If retries were exhausted this is empty.
+
 response   - The response from the last attempt (which may or may not have been successful.
 
+=back
+
+=back
+
 =cut
 
 sub ssi_with_retries {
@@ -118,6 +134,9 @@ sub ssi_with_retries {
     do {
 	($content, $response) = &Apache::lonnet::ssi($resource, %form);
 	$ok      = $response->is_success;
+        if (!$ok) {
+            &Apache::lonnet::logthis("Failed ssi_with_retries on $resource: ".$response->is_success.', '.$response->code.', '.$response->message);
+        }
 	$retries--;
     } while (!$ok && ($retries > 0));
 
@@ -266,14 +285,14 @@ BEGIN {
 
 =over 4
 
-=item * browser_and_searcher_javascript ()
+=item * &browser_and_searcher_javascript()
 
 X<browsing, javascript>X<searching, javascript>Returns a string
 containing javascript with two functions, C<openbrowser> and
 C<opensearcher>. Returned string does not contain E<lt>scriptE<gt>
 tags.
 
-=item * openbrowser(formname,elementname,only,omit) [javascript]
+=item * &openbrowser(formname,elementname,only,omit) [javascript]
 
 inputs: formname, elementname, only, omit
 
@@ -286,7 +305,7 @@ with the given extension.  Can be a comm
 Specifying 'omit' will restrict the browser to NOT displaying files
 with the given extension.  Can be a comma separated list.
 
-=item * opensearcher(formname, elementname) [javascript]
+=item * &opensearcher(formname,elementname) [javascript]
 
 Inputs: formname, elementname
 
@@ -371,7 +390,7 @@ sub storeresurl {
     unless ($resurl=~/^\/res/) { return 0; }
     $resurl=~s/\/$//;
     &Apache::lonnet::put('environment',{'lastresurl' => $resurl});
-    &Apache::lonnet::appenv('environment.lastresurl' => $resurl);
+    &Apache::lonnet::appenv({'environment.lastresurl' => $resurl});
     return 1;
 }
 
@@ -429,6 +448,25 @@ sub selectstudent_link {
    return '';
 }
 
+sub authorbrowser_javascript {
+    return <<"ENDAUTHORBRW";
+<script type="text/javascript">
+var stdeditbrowser;
+
+function openauthorbrowser(formname,udom) {
+    var url = '/adm/pickauthor?';
+    url += 'form='+formname+'&roledom='+udom;
+    var title = 'Author_Browser';
+    var options = 'scrollbars=1,resizable=1,menubar=0';
+    options += ',width=700,height=600';
+    stdeditbrowser = open(url,title,options,'1');
+    stdeditbrowser.focus();
+}
+
+</script>
+ENDAUTHORBRW
+}
+
 sub coursebrowser_javascript {
     my ($domainfilter,$sec_element,$formname)=@_;
     my $crs_or_grp_alert = &mt('Please select the type of LON-CAPA entity - Course or Group - for which you wish to add/modify a user role');
@@ -566,6 +604,12 @@ sub selectcourse_link {
         '","'.$udomele.'","'.$desc.'","'.$extra_element.'","'.$multflag.'","'.$selecttype.'");'."'>".&mt('Select Course')."</a>";
 }
 
+sub selectauthor_link {
+   my ($form,$udom)=@_;
+   return '<a href="javascript:openauthorbrowser('."'$form','$udom'".');">'.
+          &mt('Select Author').'</a>';
+}
+
 sub check_uncheck_jscript {
     my $jscript = <<"ENDSCRT";
 function checkAll(field) {
@@ -591,10 +635,31 @@ ENDSCRT
     return $jscript;
 }
 
+sub select_timezone {
+   my ($name,$selected,$onchange,$includeempty)=@_;
+   my $output='<select name="'.$name.'" '.$onchange.'>'."\n";
+   if ($includeempty) {
+       $output .= '<option value=""';
+       if (($selected eq '') || ($selected eq 'local')) {
+           $output .= ' selected="selected" ';
+       }
+       $output .= '> </option>';
+   }
+   my @timezones = DateTime::TimeZone->all_names;
+   foreach my $tzone (@timezones) {
+       $output.= '<option value="'.$tzone.'"';
+       if ($tzone eq $selected) {
+           $output.=' selected="selected"';
+       }
+       $output.=">$tzone</option>\n";
+   }
+   $output.="</select>";
+   return $output;
+}
 
 =pod
 
-=item * linked_select_forms(...)
+=item * &linked_select_forms(...)
 
 linked_select_forms returns a string containing a <script></script> block
 and html for two <select> menus.  The select menus will be linked in that
@@ -759,7 +824,7 @@ END
 
 =pod
 
-=item * help_open_topic($topic, $text, $stayOnPage, $width, $height)
+=item * &help_open_topic($topic,$text,$stayOnPage,$width,$height)
 
 Returns a string corresponding to an HTML link to the given help
 $topic, where $topic corresponds to the name of a .tex file in
@@ -813,7 +878,7 @@ sub help_open_topic {
 
     # Add the graphic
     my $title = &mt('Online Help');
-    my $helpicon=&lonhttpdurl("/adm/help/gif/smallHelp.gif");
+    my $helpicon=&lonhttpdurl("/res/adm/pages/help.png");
     $template .= <<"ENDTEMPLATE";
  <a target="_top" href="$link" title="$title"><img src="$helpicon" border="0" alt="(Help: $topic)" /></a>
 ENDTEMPLATE
@@ -1069,7 +1134,7 @@ ENDTEMPLATE
 
 =pod
 
-=item * change_content_javascript():
+=item * &change_content_javascript():
 
 This and the next function allow you to create small sections of an
 otherwise static HTML page that you can update on the fly with
@@ -1124,7 +1189,7 @@ DOMBASED
 
 =pod
 
-=item * changable_area($name, $origContent):
+=item * &changable_area($name,$origContent):
 
 This provides a "changable area" that can be modified on the fly via
 the Javascript code provided in C<change_content_javascript>. $name is
@@ -1148,7 +1213,7 @@ sub changable_area {
 
 =pod
 
-=item * viewport_geometry_js {
+=item * &viewport_geometry_js 
 
 Provides javascript object (Geometry) which can provide information about the viewport geometry for the client browser.
 
@@ -1195,7 +1260,7 @@ GEOMETRY
 
 =pod
 
-=item * viewport_size_js {
+=item * &viewport_size_js()
 
 Provides a javascript function to set values of two form elements - width and height (elements are passed in as arguments to the javascript function) to the dimensions of the user's browser window. 
 
@@ -1219,7 +1284,7 @@ DIMS
 
 =pod
 
-=item * resize_textarea_js
+=item * &resize_textarea_js()
 
 emits the needed javascript to resize a textarea to be as big as possible
 
@@ -1228,6 +1293,7 @@ the id of the element to resize, second
 surrounds everything that comes after the textarea, this routine needs
 to be attached to the <body> for the onload and onresize events.
 
+=back
 
 =cut
 
@@ -1280,8 +1346,6 @@ RESIZE
 
 =pod
 
-=back
- 
 =head1 Excel and CSV file utility routines
 
 =over 4
@@ -1293,7 +1357,7 @@ RESIZE
 
 =pod
 
-=item * csv_translate($text) 
+=item * &csv_translate($text) 
 
 Translate $text to allow it to be output as a 'comma separated values' 
 format.
@@ -1314,7 +1378,7 @@ sub csv_translate {
 
 =pod
 
-=item * define_excel_formats
+=item * &define_excel_formats()
 
 Define some commonly used Excel cell formats.
 
@@ -1370,7 +1434,7 @@ sub define_excel_formats {
 
 =pod
 
-=item * create_workbook
+=item * &create_workbook()
 
 Create an Excel worksheet.  If it fails, output message on the
 request object and return undefs.
@@ -1413,7 +1477,7 @@ sub create_workbook {
 
 =pod
 
-=item * create_text_file
+=item * &create_text_file()
 
 Create a file to write to and eventually make available to the user.
 If file creation fails, outputs an error message on the request object and 
@@ -1481,7 +1545,7 @@ sub domain_select {
 
 =over 4
 
-=item * multiple_select_form($name,$value,$size,$hash,$order)
+=item * &multiple_select_form($name,$value,$size,$hash,$order)
 
 Returns a string containing a <select> element int multiple mode
 
@@ -1531,7 +1595,7 @@ sub multiple_select_form {
 
 =pod
 
-=item * select_form($defdom,$name,%hash)
+=item * &select_form($defdom,$name,%hash)
 
 Returns a string containing a <select name='$name' size='1'> form to 
 allow a user to select options from a hash option_name => displayed text.  
@@ -1618,7 +1682,7 @@ sub select_level_form {
 
 =pod
 
-=item * select_dom_form($defdom,$name,$includeempty,$showdomdesc)
+=item * &select_dom_form($defdom,$name,$includeempty,$showdomdesc)
 
 Returns a string containing a <select name='$name' size='1'> form to 
 allow a user to select the domain to preform an operation in.  
@@ -1658,7 +1722,7 @@ sub select_dom_form {
 
 =pod
 
-=item * home_server_form_item($domain,$name,$defaultflag)
+=item * &home_server_form_item($domain,$name,$defaultflag)
 
 input: 4 arguments (two required, two optional) - 
     $domain - domain of new user
@@ -1818,14 +1882,12 @@ sub decode_user_agent {
 
 =over 4
 
-=item * authform_xxxxxx
+=item * &authform_xxxxxx()
 
 The authform_xxxxxx subroutines provide javascript and html forms which 
 handle some of the conveniences required for authentication forms.  
 This is not an optimal method, but it works.  
 
-See loncreateuser.pm for invocation and use examples.
-
 =over 4
 
 =item * authform_header
@@ -1842,7 +1904,7 @@ See loncreateuser.pm for invocation and
 
 =back
 
-=back 
+See loncreateuser.pm for invocation and use examples.
 
 =cut
 
@@ -2305,14 +2367,20 @@ sub get_assignable_auth {
 
 =pod
 
-=item * get_kerberos_defaults
+=item * &get_kerberos_defaults()
 
 get_kerberos_defaults($target_domain) returns the default kerberos
 version and domain. If not found, it defaults to version 4 and the 
 domain of the server.
 
+=over 4
+
 ($def_version, $def_krb_domain) = &get_kerberos_defaults($target_domain);
 
+=back
+
+=back
+
 =cut
 
 #-------------------------------------------
@@ -2332,11 +2400,6 @@ sub get_kerberos_defaults {
     return ($krbdef,$krbdefdom);
 }
 
-=pod
-
-=back
-
-=cut
 
 ###############################################################
 ##                Thesaurus Functions                        ##
@@ -2348,7 +2411,7 @@ sub get_kerberos_defaults {
 
 =over 4
 
-=item * initialize_keywords
+=item * &initialize_keywords()
 
 Initializes the package variable %Keywords if it is empty.  Uses the
 package variable $thesaurus_db_file.
@@ -2393,7 +2456,7 @@ sub initialize_keywords {
 
 =pod
 
-=item * keyword($word)
+=item * &keyword($word)
 
 Returns true if $word is a keyword.  A keyword is a word that appears more 
 than the average number of times in the thesaurus database.  Calls 
@@ -2414,7 +2477,7 @@ sub keyword {
 
 =pod 
 
-=item * get_related_words
+=item * &get_related_words()
 
 Look up a word in the thesaurus.  Takes a scalar argument and returns
 an array of words.  If the keyword is not in the thesaurus, an empty array
@@ -2472,7 +2535,7 @@ sub get_related_words {
 
 =over 4
 
-=item * plainname($uname,$udom,$first)
+=item * &plainname($uname,$udom,$first)
 
 Takes a users logon name and returns it as a string in
 "first middle last generation" form 
@@ -2501,7 +2564,7 @@ sub plainname {
 # -------------------------------------------------------------------- Nickname
 =pod
 
-=item * nickname($uname,$udom)
+=item * &nickname($uname,$udom)
 
 Gets a users name and returns it as a string as
 
@@ -2551,18 +2614,21 @@ sub getnames {
 }
 
 # -------------------------------------------------------------------- getemails
+
 =pod
 
-=item * getemails($uname,$udom)
+=item * &getemails($uname,$udom)
 
 Gets a user's email information and returns it as a hash with keys:
 notification, critnotification, permanentemail
 
 For notification and critnotification, values are comma-separated lists 
-of e-mail address(es); for permanentemail, value is a single e-mail address.
+of e-mail addresses; for permanentemail, value is a single e-mail address.
  
+
 =cut
 
+
 sub getemails {
     my ($uname,$udom)=@_;
     if ($udom eq 'public' && $uname eq 'public') {
@@ -2597,7 +2663,7 @@ sub flush_email_cache {
 
 =pod
 
-=item * screenname($uname,$udom)
+=item * &screenname($uname,$udom)
 
 Gets a users screenname and returns it as a string
 
@@ -2693,7 +2759,7 @@ sub student_image_tag {
 
 =over 4
 
-=item * languageids() 
+=item * &languageids() 
 
 returns list of all language ids
 
@@ -2705,7 +2771,7 @@ sub languageids {
 
 =pod
 
-=item * languagedescription() 
+=item * &languagedescription() 
 
 returns description of a specified language id
 
@@ -2730,7 +2796,7 @@ sub supportedlanguagecode {
 
 =pod
 
-=item * copyrightids() 
+=item * &copyrightids() 
 
 returns list of all copyrights
 
@@ -2742,7 +2808,7 @@ sub copyrightids {
 
 =pod
 
-=item * copyrightdescription() 
+=item * &copyrightdescription() 
 
 returns description of a specified copyright id
 
@@ -2754,7 +2820,7 @@ sub copyrightdescription {
 
 =pod
 
-=item * source_copyrightids() 
+=item * &source_copyrightids() 
 
 returns list of all source copyrights
 
@@ -2766,7 +2832,7 @@ sub source_copyrightids {
 
 =pod
 
-=item * source_copyrightdescription() 
+=item * &source_copyrightdescription() 
 
 returns description of a specified source copyright id
 
@@ -2778,7 +2844,7 @@ sub source_copyrightdescription {
 
 =pod
 
-=item * filecategories() 
+=item * &filecategories() 
 
 returns list of all file categories
 
@@ -2790,7 +2856,7 @@ sub filecategories {
 
 =pod
 
-=item * filecategorytypes() 
+=item * &filecategorytypes() 
 
 returns list of file types belonging to a given file
 category
@@ -2804,7 +2870,7 @@ sub filecategorytypes {
 
 =pod
 
-=item * fileembstyle() 
+=item * &fileembstyle() 
 
 returns embedding style for a specified file type
 
@@ -2828,7 +2894,7 @@ sub filecategoryselect {
 
 =pod
 
-=item * filedescription() 
+=item * &filedescription() 
 
 returns description for a specified file type
 
@@ -2842,7 +2908,7 @@ sub filedescription {
 
 =pod
 
-=item * filedescriptionex() 
+=item * &filedescriptionex() 
 
 returns description for a specified file type with
 extra formatting
@@ -2888,10 +2954,14 @@ sub display_languages {
 
 sub preferred_languages {
     my @languages=();
+    if (($env{'request.role.adv'}) && ($env{'form.languages'})) {
+        @languages=(@languages,split(/\s*(\,|\;|\:)\s*/,$env{'form.languages'}));
+    }
     if ($env{'course.'.$env{'request.course.id'}.'.languages'}) {
 	@languages=(@languages,split(/\s*(\,|\;|\:)\s*/,
 	         $env{'course.'.$env{'request.course.id'}.'.languages'}));
     }
+
     if ($env{'environment.languages'}) {
 	@languages=(@languages,
 		    split(/\s*(\,|\;|\:)\s*/,$env{'environment.languages'}));
@@ -2960,7 +3030,7 @@ sub languages {
 
 =over 4
 
-=item * get_previous_attempt($symb, $username, $domain, $course,
+=item * &get_previous_attempt($symb, $username, $domain, $course,
     $getattempt, $regexp, $gradesub)
 
 Return string with previous attempt on problem. Arguments:
@@ -3104,7 +3174,7 @@ sub relative_to_absolute {
 
 =pod
 
-=item * get_student_view
+=item * &get_student_view()
 
 show a snapshot of what student was looking at
 
@@ -3123,7 +3193,7 @@ sub get_student_view {
   }
   if (defined($target)) { $form{'grade_target'} = $target; }
   $feedurl=&Apache::lonnet::clutter($feedurl);
-  my $userview=&Apache::lonnet::ssi_body($feedurl,%form);
+  my ($userview,$response)=&Apache::lonnet::ssi_body($feedurl,%form);
   $userview=~s/\<body[^\>]*\>//gi;
   $userview=~s/\<\/body\>//gi;
   $userview=~s/\<html\>//gi;
@@ -3132,12 +3202,44 @@ sub get_student_view {
   $userview=~s/\<\/head\>//gi;
   $userview=~s/action\s*\=/would_be_action\=/gi;
   $userview=&relative_to_absolute($feedurl,$userview);
-  return $userview;
+  if (wantarray) {
+     return ($userview,$response);
+  } else {
+     return $userview;
+  }
+}
+
+sub get_student_view_with_retries {
+  my ($symb,$retries,$username,$domain,$courseid,$target,$moreenv) = @_;
+
+    my $ok = 0;                 # True if we got a good response.
+    my $content;
+    my $response;
+
+    # Try to get the student_view done. within the retries count:
+    
+    do {
+         ($content, $response) = &get_student_view($symb,$username,$domain,$courseid,$target,$moreenv);
+         $ok      = $response->is_success;
+         if (!$ok) {
+            &Apache::lonnet::logthis("Failed get_student_view_with_retries on $symb: ".$response->is_success.', '.$response->code.', '.$response->message);
+         }
+         $retries--;
+    } while (!$ok && ($retries > 0));
+    
+    if (!$ok) {
+       $content = '';          # On error return an empty content.
+    }
+    if (wantarray) {
+       return ($content, $response);
+    } else {
+       return $content;
+    }
 }
 
 =pod
 
-=item * get_student_answers() 
+=item * &get_student_answers() 
 
 show a snapshot of how student was answering problem
 
@@ -5342,10 +5444,7 @@ Inputs: none
 
 sub font_settings {
     my $headerstring='';
-    if (($env{'browser.os'} eq 'mac') && (!$env{'browser.mathml'})) { 
-	$headerstring.=
-	    '<meta Content-Type="text/html; charset=x-mac-roman" />';
-    } elsif (!$env{'browser.mathml'} && $env{'browser.unicode'}) {
+    if (!$env{'browser.mathml'} && $env{'browser.unicode'}) {
 	$headerstring.=
 	    '<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />';
     }
@@ -5404,8 +5503,15 @@ sub endheadtag {
 
 Returns a uniform complete <head>..</head> section for LON-CAPA web pages.
 
-Inputs: $title - optional title for the page
-        $head_extra - optional extra HTML to put inside the <head>
+Inputs:
+
+=over 4
+
+$title - optional title for the page
+
+$head_extra - optional extra HTML to put inside the <head>
+
+=back
 
 =cut
 
@@ -5420,44 +5526,54 @@ sub head {
 
 Returns a complete <html> .. <body> section for LON-CAPA web pages.
 
-Inputs: $title - optional title for the page
-        $head_extra - optional extra HTML to incude inside the <head>
-        $args - additional optional args supported are:
-                  only_body      -> is true will set &bodytag() onlybodytag
+Inputs:
+
+=over 4
+
+$title - optional title for the page
+
+$head_extra - optional extra HTML to incude inside the <head>
+
+$args - additional optional args supported are:
+
+=over 8
+
+             only_body      -> is true will set &bodytag() onlybodytag
                                     arg on
-                  no_nav_bar     -> is true will set &bodytag() notopbar arg on
-                  add_entries    -> additional attributes to add to the  <body>
-                  domain         -> force to color decorate a page for a 
+             no_nav_bar     -> is true will set &bodytag() notopbar arg on
+             add_entries    -> additional attributes to add to the  <body>
+             domain         -> force to color decorate a page for a 
                                     specific domain
-                  function       -> force usage of a specific rolish color
+             function       -> force usage of a specific rolish color
                                     scheme
-                  redirect       -> see &headtag()
-                  bgcolor        -> override the default page bg color
-                  js_ready       -> return a string ready for being used in 
+             redirect       -> see &headtag()
+             bgcolor        -> override the default page bg color
+             js_ready       -> return a string ready for being used in 
                                     a javascript writeln
-                  html_encode    -> return a string ready for being used in 
+             html_encode    -> return a string ready for being used in 
                                     a html attribute
-                  force_register -> if is true will turn on the &bodytag()
+             force_register -> if is true will turn on the &bodytag()
                                     $forcereg arg
-                  body_title     -> alternate text to use instead of $title
+             body_title     -> alternate text to use instead of $title
                                     in the title box that appears, this text
                                     is not auto translated like the $title is
-                  frameset       -> if true will start with a <frameset>
+             frameset       -> if true will start with a <frameset>
                                     rather than <body>
-                  no_title       -> if true the title bar won't be shown
-                  skip_phases    -> hash ref of 
+             no_title       -> if true the title bar won't be shown
+             skip_phases    -> hash ref of 
                                     head -> skip the <html><head> generation
                                     body -> skip all <body> generation
-
-                  no_inline_link -> if true and in remote mode, don't show the 
+             no_inline_link -> if true and in remote mode, don't show the 
                                     'Switch To Inline Menu' link
-
-                  no_auto_mt_title -> prevent &mt()ing the title arg
-
-                  inherit_jsmath -> when creating popup window in a page,
+             no_auto_mt_title -> prevent &mt()ing the title arg
+             inherit_jsmath -> when creating popup window in a page,
                                     should it have jsmath forced on by the
                                     current page
 
+=back
+
+=back
+
 =cut
 
 sub start_page {
@@ -6787,7 +6903,7 @@ sub get_institutional_codes {
 
 =over 4
 
-=item * get_unprocessed_cgi($query,$possible_names)
+=item * &get_unprocessed_cgi($query,$possible_names)
 
 Modify the %env hash to contain unprocessed CGI form parameters held in
 $query.  The parameters listed in $possible_names (an array reference),
@@ -6816,7 +6932,7 @@ sub get_unprocessed_cgi {
 
 =pod
 
-=item * cacheheader() 
+=item * &cacheheader() 
 
 returns cache-controlling header code
 
@@ -6833,7 +6949,7 @@ sub cacheheader {
 
 =pod
 
-=item * no_cache($r) 
+=item * &no_cache($r) 
 
 specifies header code to not have cache
 
@@ -6869,7 +6985,7 @@ sub content_type {
 
 =pod
 
-=item * add_to_env($name,$value) 
+=item * &add_to_env($name,$value) 
 
 adds $name to the %env hash with value
 $value, if $name already exists, the entry is converted to an array
@@ -6896,7 +7012,7 @@ sub add_to_env {
 
 =pod
 
-=item * get_env_multiple($name) 
+=item * &get_env_multiple($name) 
 
 gets $name from the %env hash, it seemlessly handles the cases where multiple
 values may be defined and end up as an array ref.
@@ -6919,6 +7035,54 @@ sub get_env_multiple {
     return(@values);
 }
 
+sub ask_for_embedded_content {
+    my ($actionurl,$state,$allfiles,$codebase,$args)=@_;
+    my $upload_output = '
+   <form name="upload_embedded" action="'.$actionurl.'"
+                  method="post" enctype="multipart/form-data">';
+    $upload_output .= $state;
+    $upload_output .= '<b>Upload embedded files</b>:<br />'.start_data_table();
+
+    my $num = 0;
+    foreach my $embed_file (sort {lc($a) cmp lc($b)} keys(%{$allfiles})) {
+        $upload_output .= &start_data_table_row().
+            '<td>'.$embed_file.'</td><td>';
+        if ($args->{'ignore_remote_references'}
+            && $embed_file =~ m{^\w+://}) {
+            $upload_output.='<span class="LC_warning">'.&mt("URL points to other server.").'</span>';
+        } elsif ($args->{'error_on_invalid_names'}
+            && $embed_file ne &Apache::lonnet::clean_filename($embed_file,{'keep_path' => 1,})) {
+
+            $upload_output.='<span class="LC_warning">'.&mt("Invalid characters").'</span>';
+
+        } else {
+
+            $upload_output .='
+           <input name="embedded_item_'.$num.'" type="file" value="bob" />
+           <input name="embedded_orig_'.$num.'" type="hidden" value="'.&escape($embed_file).'" />';
+            my $attrib = join(':',@{$$allfiles{$embed_file}});
+            $upload_output .=
+                "\n\t\t".
+                '<input name="embedded_attrib_'.$num.'" type="hidden" value="'.
+                $attrib.'" />';
+            if (exists($$codebase{$embed_file})) {
+                $upload_output .=
+                    "\n\t\t".
+                    '<input name="codebase_'.$num.'" type="hidden" value="'.
+                    &escape($$codebase{$embed_file}).'" />';
+            }
+        }
+        $upload_output .= '</td>'.&Apache::loncommon::end_data_table_row();
+        $num++;
+    }
+    $upload_output .= &Apache::loncommon::end_data_table().'<br />
+   <input type ="hidden" name="number_embedded_items" value="'.$num.'" />
+   <input type ="submit" value="'.&mt('Upload Listed Files').'" />
+   '.&mt('(only files for which a location has been provided will be uploaded)').'
+   </form>';
+    return $upload_output;
+}
+
 
 =pod
 
@@ -6928,7 +7092,7 @@ sub get_env_multiple {
 
 =over 4
 
-=item * upfile_store($r)
+=item * &upfile_store($r)
 
 Store uploaded file, $r should be the HTTP Request object,
 needs $env{'form.upfile'}
@@ -6958,7 +7122,7 @@ sub upfile_store {
 
 =pod
 
-=item * load_tmp_file($r)
+=item * &load_tmp_file($r)
 
 Load uploaded file from tmp, $r should be the HTTP Request object,
 needs $env{'form.datatoken'},
@@ -6982,7 +7146,7 @@ sub load_tmp_file {
 
 =pod
 
-=item * upfile_record_sep()
+=item * &upfile_record_sep()
 
 Separate uploaded file into records
 returns array of records,
@@ -7004,7 +7168,7 @@ sub upfile_record_sep {
 
 =pod
 
-=item * record_sep($record)
+=item * &record_sep($record)
 
 Separate a record into fields $record should be an item from the upfile_record_sep(), needs $env{'form.upfiletype'}
 
@@ -7089,7 +7253,7 @@ sub record_sep {
 
 =pod
 
-=item * upfile_select_html()
+=item * &upfile_select_html()
 
 Return HTML code to select a file from the users machine and specify 
 the file type.
@@ -7136,7 +7300,7 @@ sub get_samples {
 
 =pod
 
-=item * csv_print_samples($r,$records)
+=item * &csv_print_samples($r,$records)
 
 Prints a table of sample values from each column uploaded $r is an
 Apache Request ref, $records is an arrayref from
@@ -7172,7 +7336,7 @@ sub csv_print_samples {
 
 =pod
 
-=item * csv_print_select_table($r,$records,$d)
+=item * &csv_print_select_table($r,$records,$d)
 
 Prints a table to create associations between values and table columns.
 
@@ -7218,7 +7382,7 @@ sub csv_print_select_table {
 
 =pod
 
-=item * csv_samples_select_table($r,$records,$d)
+=item * &csv_samples_select_table($r,$records,$d)
 
 Prints a table of sample values from the upload and can make associate samples to internal names.
 
@@ -7268,7 +7432,7 @@ sub csv_samples_select_table {
 
 =pod
 
-=item clean_excel_name($name)
+=item * &clean_excel_name($name)
 
 Returns a replacement for $name which does not contain any illegal characters.
 
@@ -7287,7 +7451,7 @@ sub clean_excel_name {
 
 =pod
 
-=item * check_if_partid_hidden($id,$symb,$udom,$uname)
+=item * &check_if_partid_hidden($id,$symb,$udom,$uname)
 
 Returns either 1 or undef
 
@@ -7328,7 +7492,7 @@ sub check_if_partid_hidden {
 
 =over 4
 
-=item get_cgi_id
+=item * &get_cgi_id()
 
 Inputs: none
 
@@ -7352,7 +7516,7 @@ sub get_cgi_id {
 
 =pod
 
-=item DrawBarGraph
+=item * &DrawBarGraph()
 
 Facilitates the plotting of data in a (stacked) bar graph.
 Puts plot definition data into the users environment in order for 
@@ -7487,7 +7651,7 @@ sub DrawBarGraph {
         $ValuesHash{$id.'.'.$key} = $value;
     }
     #
-    &Apache::lonnet::appenv(%ValuesHash);
+    &Apache::lonnet::appenv(\%ValuesHash);
     return '<img src="/cgi-bin/graph.png?'.$identifier.'" border="1" />';
 }
 
@@ -7496,7 +7660,7 @@ sub DrawBarGraph {
 
 =pod
 
-=item DrawXYGraph
+=item * &DrawXYGraph()
 
 Facilitates the plotting of data in an XY graph.
 Puts plot definition data into the users environment in order for 
@@ -7577,7 +7741,7 @@ sub DrawXYGraph {
         $ValuesHash{$id.'.'.$key} = $value;
     }
     #
-    &Apache::lonnet::appenv(%ValuesHash);
+    &Apache::lonnet::appenv(\%ValuesHash);
     return '<img src="/cgi-bin/graph.png?'.$identifier.'" border="1" />';
 }
 
@@ -7586,7 +7750,7 @@ sub DrawXYGraph {
 
 =pod
 
-=item DrawXYYGraph
+=item * &DrawXYYGraph()
 
 Facilitates the plotting of data in an XY graph with two Y axes.
 Puts plot definition data into the users environment in order for 
@@ -7679,7 +7843,7 @@ sub DrawXYYGraph {
         $ValuesHash{$id.'.'.$key} = $value;
     }
     #
-    &Apache::lonnet::appenv(%ValuesHash);
+    &Apache::lonnet::appenv(\%ValuesHash);
     return '<img src="/cgi-bin/graph.png?'.$identifier.'" border="1" />';
 }
 
@@ -7696,7 +7860,7 @@ Bad place for them but what the hell.
 
 =over 4
 
-=item &chartlink
+=item * &chartlink()
 
 Returns a link to the chart for a specific student.  
 
@@ -7735,9 +7899,9 @@ sub chartlink {
 
 =over 4
 
-=item &restore_course_settings 
+=item * &restore_course_settings()
 
-=item &store_course_settings
+=item * &store_course_settings()
 
 Restores/Store indicated form parameters from the course environment.
 Will not overwrite existing values of the form parameters.
@@ -7811,7 +7975,7 @@ sub store_settings {
                                  'got error:'.$put_result);
     }
     # Make sure these settings stick around in this session, too
-    &Apache::lonnet::appenv(%AppHash);
+    &Apache::lonnet::appenv(\%AppHash);
     return;
 }
 
@@ -7848,7 +8012,7 @@ sub restore_settings {
 
 =over 4
 
-=item &build_recipient_list
+=item * &build_recipient_list()
 
 Build recipient lists for three types of e-mail:
 (a) Error Reports, (b) Package Updates, (c) Help requests, generated by
@@ -7861,7 +8025,9 @@ defdom (domain for which to retrieve con
 origmail (scalar - email address of recipient from loncapa.conf, 
 i.e., predates configuration by DC via domainprefs.pm 
 
-Returns: comma separated list of addresses to which to send e-mail.   
+Returns: comma separated list of addresses to which to send e-mail.
+
+=back
 
 =cut
 
@@ -7912,6 +8078,172 @@ sub build_recipient_list {
 ############################################################
 ############################################################
 
+=pod
+
+=head1 Course Catalog Routines
+
+=over 4
+
+=item * &gather_categories()
+
+Converts category definitions - keys of categories hash stored in  
+coursecategories in configuration.db on the primary library server in a 
+domain - to an array.  Also generates javascript and idx hash used to 
+generate Domain Coordinator interface for editing Course Categories.
+
+Inputs:
+categories (reference to hash of category definitions).
+cats (reference to array of arrays/hashes which encapsulates hierarchy of
+      categories and subcategories).
+idx (reference to hash of counters used in Domain Coordinator interface for 
+      editing Course Categories).
+jsarray (reference to array of categories used to create Javascript arrays for
+         Domain Coordinator interface for editing Course Categories).
+
+Returns: nothing
+
+Side effects: populates cats, idx and jsarray. 
+
+=cut
+
+sub gather_categories {
+    my ($categories,$cats,$idx,$jsarray) = @_;
+    my %counters;
+    my $num = 0;
+    foreach my $item (keys(%{$categories})) {
+        my ($cat,$container,$depth) = map { &unescape($_); } split(/:/,$item);
+        if ($container eq '' && $depth == 0) {
+            $cats->[$depth][$categories->{$item}] = $cat;
+        } else {
+            $cats->[$depth]{$container}[$categories->{$item}] = $cat;
+        }
+        my ($escitem,$tail) = split(/:/,$item,2);
+        if ($counters{$tail} eq '') {
+            $counters{$tail} = $num;
+            $num ++;
+        }
+        if (ref($idx) eq 'HASH') {
+            $idx->{$item} = $counters{$tail};
+        }
+        if (ref($jsarray) eq 'ARRAY') {
+            push(@{$jsarray->[$counters{$tail}]},$item);
+        }
+    }
+    return;
+}
+
+=pod
+
+=item * &extract_categories()
+
+Used to generate breadcrumb trails for course categories.
+
+Inputs:
+categories (reference to hash of category definitions).
+cats (reference to array of arrays/hashes which encapsulates hierarchy of
+      categories and subcategories).
+trails (reference to array of breacrumb trails for each category).
+allitems (reference to hash - key is category key 
+         (format: escaped(name):escaped(parent category):depth in hierarchy).
+idx (reference to hash of counters used in Domain Coordinator interface for
+      editing Course Categories).
+jsarray (reference to array of categories used to create Javascript arrays for
+         Domain Coordinator interface for editing Course Categories).
+
+Returns: nothing
+
+Side effects: populates trails and allitems hash references.
+
+=cut
+
+sub extract_categories {
+    my ($categories,$cats,$trails,$allitems,$idx,$jsarray) = @_;
+    if (ref($categories) eq 'HASH') {
+        &gather_categories($categories,$cats,$idx,$jsarray);
+        if (ref($cats->[0]) eq 'ARRAY') {
+            for (my $i=0; $i<@{$cats->[0]}; $i++) {
+                my $name = $cats->[0][$i];
+                my $item = &escape($name).'::0';
+                my $trailstr;
+                if ($name eq 'instcode') {
+                    $trailstr = &mt('Official courses (with institutional codes)');
+                } else {
+                    $trailstr = $name;
+                }
+                if ($allitems->{$item} eq '') {
+                    push(@{$trails},$trailstr);
+                    $allitems->{$item} = scalar(@{$trails})-1;
+                }
+                my @parents = ($name);
+                if (ref($cats->[1]{$name}) eq 'ARRAY') {
+                    for (my $j=0; $j<@{$cats->[1]{$name}}; $j++) {
+                        my $category = $cats->[1]{$name}[$j];
+                        &recurse_categories($cats,2,$category,$trails,$allitems,\@parents);
+                    }
+                }
+            }
+        }
+    }
+    return;
+}
+
+=pod
+
+=item *&recurse_categories()
+
+Recursively used to generate breadcrumb trails for course categories.
+
+Inputs:
+cats (reference to array of arrays/hashes which encapsulates hierarchy of
+      categories and subcategories).
+depth (current depth in hierarchy of categories and sub-categories - 0 indexed).
+category (current course category, for which breadcrumb trail is being generated).   
+trails (reference to array of breacrumb trails for each category).
+allitems (reference to hash - key is category key
+         (format: escaped(name):escaped(parent category):depth in hierarchy).
+parents (array containing containers directories for current category, 
+         back to top level). 
+
+Returns: nothing
+
+Side effects: populates trails and allitems hash references
+
+=back
+
+=cut
+
+sub recurse_categories {
+    my ($cats,$depth,$category,$trails,$allitems,$parents) = @_;
+    my $shallower = $depth - 1;
+    if (ref($cats->[$depth]{$category}) eq 'ARRAY') {
+        for (my $k=0; $k<@{$cats->[$depth]{$category}}; $k++) {
+            my $name = $cats->[$depth]{$category}[$k];
+            my $item = &escape($category).':'.&escape($parents->[-1]).':'.$shallower;
+            my $trailstr = join(' -&gt; ',(@{$parents},$category));
+            if ($allitems->{$item} eq '') {
+                push(@{$trails},$trailstr);
+                $allitems->{$item} = scalar(@{$trails})-1;
+            }
+            my $deeper = $depth+1;
+            push(@{$parents},$category);
+            &recurse_categories($cats,$deeper,$name,$trails,$allitems,$parents);
+            pop(@{$parents});
+        }
+    } else {
+        my $item = &escape($category).':'.&escape($parents->[-1]).':'.$shallower;
+        my $trailstr = join(' -&gt; ',(@{$parents},$category));
+        if ($allitems->{$item} eq '') {
+            push(@{$trails},$trailstr);
+            $allitems->{$item} = scalar(@{$trails})-1;
+        }
+    }
+    return;
+}
+
+############################################################
+############################################################
+
+
 sub commit_customrole {
     my ($udom,$uname,$url,$three,$four,$five,$start,$end) = @_;
     my $output = &mt('Assigning custom role').' "'.$five.'" by '.$four.':'.$three.' in '.$url.
@@ -7953,7 +8285,7 @@ sub commit_standardrole {
         $output = &mt('Assigning').' '.$three.' in '.$url.
                ($start?', '.&mt('starting').' '.localtime($start):'').
                ($end?', '.&mt('ending').' '.localtime($end):'').': ';
-        my $result = &Apache::lonnet::assignrole($udom,$uname,$url,$three,$end,$start);
+        my $result = &Apache::lonnet::assignrole($udom,$uname,$url,$three,$end,$start,'','',$context);
         if ($context eq 'auto') {
             $output .= $result.$linefeed;
         } else {
@@ -7988,7 +8320,7 @@ sub commit_studentrole {
                 }
                 $oldsecurl = $uurl;
                 $expire_role_result = 
-                    &Apache::lonnet::assignrole($udom,$uname,$uurl,'st',$now);
+                    &Apache::lonnet::assignrole($udom,$uname,$uurl,'st',$now,'','',$context);
                 if ($env{'request.course.sec'} ne '') { 
                     if ($expire_role_result eq 'refused') {
                         my @roles = ('st');
@@ -8011,7 +8343,7 @@ sub commit_studentrole {
             }
         }
         if (($expire_role_result eq 'ok') || ($secchange == 0)) {
-            $modify_section_result = &Apache::lonnet::modify_student_enrollment($udom,$uname,undef,undef,undef,undef,undef,$sec,$end,$start,'','',$cid);
+            $modify_section_result = &Apache::lonnet::modify_student_enrollment($udom,$uname,undef,undef,undef,undef,undef,$sec,$end,$start,'','',$cid,'',$context);
             if ($modify_section_result =~ /^ok/) {
                 if ($secchange == 1) {
                     if ($sec eq '') {