--- loncom/lonnet/perl/lonnet.pm	2006/05/30 12:47:18	1.740
+++ loncom/lonnet/perl/lonnet.pm	2007/05/02 22:01:32	1.824.2.5
@@ -1,7 +1,7 @@
 # The LearningOnline Network
 # TCP networking package
 #
-# $Id: lonnet.pm,v 1.740 2006/05/30 12:47:18 www Exp $
+# $Id: lonnet.pm,v 1.824.2.5 2007/05/02 22:01:32 albertel Exp $
 #
 # Copyright Michigan State University Board of Trustees
 #
@@ -38,7 +38,7 @@ use vars
 qw(%perlvar %hostname %badServerCache %iphost %spareid %hostdom 
    %libserv %pr %prp $memcache %packagetab 
    %courselogs %accesshash %userrolehash %domainrolehash $processmarker $dumpcount 
-   %coursedombuf %coursenumbuf %coursehombuf %coursedescrbuf %courseinstcodebuf %courseownerbuf
+   %coursedombuf %coursenumbuf %coursehombuf %coursedescrbuf %courseinstcodebuf %courseownerbuf %coursetypebuf
    %domaindescription %domain_auth_def %domain_auth_arg_def 
    %domain_lang_def %domain_city %domain_longi %domain_lati %domain_primary
    $tmpdir $_64bit %env);
@@ -52,8 +52,8 @@ use Storable qw(lock_store lock_nstore l
 use Time::HiRes qw( gettimeofday tv_interval );
 use Cache::Memcached;
 use Digest::MD5;
-use lib '/home/httpd/lib/perl';
-use LONCAPA;
+use Math::Random;
+use LONCAPA qw(:DEFAULT :match);
 use LONCAPA::Configuration;
 
 my $readit;
@@ -281,10 +281,51 @@ sub critical {
     return $answer;
 }
 
-# ------------------------------------------- Transfer profile into environment
+# ------------------------------------------- check if return value is an error
 
-sub transfer_profile_to_env {
+sub error {
+    my ($result) = @_;
+    if ($result =~ /^(con_lost|no_such_host|error: (\d+) (.*))/) {
+	if ($2 == 2) { return undef; }
+	return $1;
+    }
+    return undef;
+}
+
+sub convert_and_load_session_env {
     my ($lonidsdir,$handle)=@_;
+    my @profile;
+    {
+	open(my $idf,"$lonidsdir/$handle.id");
+	flock($idf,LOCK_SH);
+	@profile=<$idf>;
+	close($idf);
+    }
+    my %temp_env;
+    foreach my $line (@profile) {
+	if ($line !~ m/=/) {
+	    return 0;
+	}
+	chomp($line);
+	my ($envname,$envvalue)=split(/=/,$line,2);
+	$temp_env{&unescape($envname)} = &unescape($envvalue);
+    }
+    unlink("$lonidsdir/$handle.id");
+    if (tie(my %disk_env,'GDBM_File',"$lonidsdir/$handle.id",&GDBM_WRCREAT(),
+	    0640)) {
+	%disk_env = %temp_env;
+	@env{keys(%temp_env)} = @disk_env{keys(%temp_env)};
+	untie(%disk_env);
+    }
+    return 1;
+}
+
+# ------------------------------------------- Transfer profile into environment
+my $env_loaded;
+sub transfer_profile_to_env {
+    my ($lonidsdir,$handle,$force_transfer) = @_;
+    if (!$force_transfer && $env_loaded) { return; } 
+
     if (!defined($lonidsdir)) {
 	$lonidsdir = $perlvar{'lonIDsDir'};
     }
@@ -292,33 +333,60 @@ sub transfer_profile_to_env {
         ($handle) = ($env{'user.environment'} =~m|/([^/]+)\.id$| );
     }
 
-    my @profile;
+    my $convert;
     {
-	open(my $idf,"$lonidsdir/$handle.id");
+    	open(my $idf,"$lonidsdir/$handle.id");
 	flock($idf,LOCK_SH);
-	@profile=<$idf>;
-	close($idf);
+	if (tie(my %disk_env,'GDBM_File',"$lonidsdir/$handle.id",
+		&GDBM_READER(),0640)) {
+	    @env{keys(%disk_env)} = @disk_env{keys(%disk_env)};
+	    untie(%disk_env);
+	} else {
+	    $convert = 1;
+	}
     }
-    my $envi;
-    my %Remove;
-    for ($envi=0;$envi<=$#profile;$envi++) {
-	chomp($profile[$envi]);
-	my ($envname,$envvalue)=split(/=/,$profile[$envi],2);
-	$envname=&unescape($envname);
-	$envvalue=&unescape($envvalue);
-	$env{$envname} = $envvalue;
+    if ($convert) {
+	if (!&convert_and_load_session_env($lonidsdir,$handle)) {
+	    &logthis("Failed to load session, or convert session.");
+	}
+    }
+
+    my %remove;
+    while ( my $envname = each(%env) ) {
         if (my ($key,$time) = ($envname =~ /^(cgi\.(\d+)_\d+\.)/)) {
             if ($time < time-300) {
-                $Remove{$key}++;
+                $remove{$key}++;
             }
         }
     }
+
     $env{'user.environment'} = "$lonidsdir/$handle.id";
-    foreach my $expired_key (keys(%Remove)) {
+    $env_loaded=1;
+    foreach my $expired_key (keys(%remove)) {
         &delenv($expired_key);
     }
 }
 
+sub timed_flock {
+    my ($file,$lock_type) = @_;
+    my $failed=0;
+    eval {
+	local $SIG{__DIE__}='DEFAULT';
+	local $SIG{ALRM}=sub {
+	    $failed=1;
+	    die("failed lock");
+	};
+	alarm(13);
+	flock($file,$lock_type);
+	alarm(0);
+    };
+    if ($failed) {
+	return undef;
+    } else {
+	return 1;
+    }
+}
+
 # ---------------------------------------------------------- Append Environment
 
 sub appenv {
@@ -333,51 +401,16 @@ sub appenv {
             $env{$key}=$newenv{$key};
         }
     }
-
-    my $lockfh;
-    unless (open($lockfh,"$env{'user.environment'}")) {
-	return 'error: '.$!;
-    }
-    unless (flock($lockfh,LOCK_EX)) {
-         &logthis("<font color=\"blue\">WARNING: ".
-                  'Could not obtain exclusive lock in appenv: '.$!);
-         close($lockfh);
-         return 'error: '.$!;
-    }
-
-    my @oldenv;
-    {
-	my $fh;
-	unless (open($fh,"$env{'user.environment'}")) {
-	    return 'error: '.$!;
+    open(my $env_file,$env{'user.environment'});
+    if (&timed_flock($env_file,LOCK_EX)
+	&&
+	tie(my %disk_env,'GDBM_File',$env{'user.environment'},
+	    (&GDBM_WRITER()|&GDBM_NOLOCK()),0640)) {
+	while (my ($key,$value) = each(%newenv)) {
+	    $disk_env{$key} = $value;
 	}
-	@oldenv=<$fh>;
-	close($fh);
+	untie(%disk_env);
     }
-    for (my $i=0; $i<=$#oldenv; $i++) {
-        chomp($oldenv[$i]);
-        if ($oldenv[$i] ne '') {
-	    my ($name,$value)=split(/=/,$oldenv[$i],2);
-	    $name=&unescape($name);
-	    $value=&unescape($value);
-	    unless (defined($newenv{$name})) {
-		$newenv{$name}=$value;
-	    }
-        }
-    }
-    {
-	my $fh;
-	unless (open($fh,">$env{'user.environment'}")) {
-	    return 'error';
-	}
-	my $newname;
-	foreach $newname (keys %newenv) {
-	    print $fh &escape($newname).'='.&escape($newenv{$newname})."\n";
-	}
-	close($fh);
-    }
-	
-    close($lockfh);
     return 'ok';
 }
 # ----------------------------------------------------- Delete from Environment
@@ -389,47 +422,36 @@ sub delenv {
                 "Attempt to delete from environment ".$delthis);
         return 'error';
     }
-    my @oldenv;
-    {
-	my $fh;
-	unless (open($fh,"$env{'user.environment'}")) {
-	    return 'error';
-	}
-	unless (flock($fh,LOCK_SH)) {
-	    &logthis("<font color=\"blue\">WARNING: ".
-		     'Could not obtain shared lock in delenv: '.$!);
-	    close($fh);
-	    return 'error: '.$!;
-	}
-	@oldenv=<$fh>;
-	close($fh);
-    }
-    {
-	my $fh;
-	unless (open($fh,">$env{'user.environment'}")) {
-	    return 'error';
-	}
-	unless (flock($fh,LOCK_EX)) {
-	    &logthis("<font color=\"blue\">WARNING: ".
-		     'Could not obtain exclusive lock in delenv: '.$!);
-	    close($fh);
-	    return 'error: '.$!;
-	}
-	foreach my $cur_key (@oldenv) {
-	    my $unescaped_cur_key = &unescape($cur_key);
-	    if ($unescaped_cur_key=~/^$delthis/) { 
-                my ($key) = split('=',$cur_key,2);
-		$key = &unescape($key);
+    open(my $env_file,$env{'user.environment'});
+    if (&timed_flock($env_file,LOCK_EX)
+	&&
+	tie(my %disk_env,'GDBM_File',$env{'user.environment'},
+	    (&GDBM_WRITER()|&GDBM_NOLOCK()),0640)) {
+	foreach my $key (keys(%disk_env)) {
+	    if ($key=~/^$delthis/) { 
                 delete($env{$key});
-            } else {
-                print $fh $cur_key; 
+                delete($disk_env{$key});
             }
 	}
-	close($fh);
+	untie(%disk_env);
     }
     return 'ok';
 }
 
+sub get_env_multiple {
+    my ($name) = @_;
+    my @values;
+    if (defined($env{$name})) {
+        # exists is it an array
+        if (ref($env{$name})) {
+            @values=@{ $env{$name} };
+        } else {
+            $values[0]=$env{$name};
+        }
+    }
+    return(@values);
+}
+
 # ------------------------------------------ Find out current server userload
 # there is a copy in lond
 sub userload {
@@ -482,48 +504,67 @@ sub overloaderror {
 
 sub spareserver {
     my ($loadpercent,$userloadpercent,$want_server_name) = @_;
-    my $tryserver;
-    my $spareserver='';
+    my $spare_server;
     if ($userloadpercent !~ /\d/) { $userloadpercent=0; }
-    my $lowestserver=$loadpercent > $userloadpercent?
-	             $loadpercent :  $userloadpercent;
-    foreach $tryserver (keys(%spareid)) {
-	my $loadans=&reply('load',$tryserver);
-	my $userloadans=&reply('userload',$tryserver);
-	if ($loadans !~ /\d/ && $userloadans !~ /\d/) {
-	    next; #didn't get a number from the server
-	}
-	my $answer;
-	if ($loadans =~ /\d/) {
-	    if ($userloadans =~ /\d/) {
-		#both are numbers, pick the bigger one
-		$answer=$loadans > $userloadans?
-		    $loadans :  $userloadans;
-	    } else {
-		$answer = $loadans;
-	    }
-	} else {
-	    $answer = $userloadans;
-	}
-	if (($answer =~ /\d/) && ($answer<$lowestserver)) {
-	    if ($want_server_name) {
-		$spareserver=$tryserver;
-	    } else {
-		$spareserver="http://$hostname{$tryserver}";
-	    }
-	    $lowestserver=$answer;
+    my $lowest_load=($loadpercent > $userloadpercent) ? $loadpercent 
+                                                     :  $userloadpercent;
+    
+    foreach my $try_server (@{ $spareid{'primary'} }) {
+	($spare_server, $lowest_load) =
+	    &compare_server_load($try_server, $spare_server, $lowest_load);
+    }
+
+    my $found_server = ($spare_server ne '' && $lowest_load < 100);
+
+    if (!$found_server) {
+	foreach my $try_server (@{ $spareid{'default'} }) {
+	    ($spare_server, $lowest_load) =
+		&compare_server_load($try_server, $spare_server, $lowest_load);
 	}
     }
-    return $spareserver;
+
+    if (!$want_server_name) {
+	$spare_server="http://$hostname{$spare_server}";
+    }
+    return $spare_server;
 }
 
+sub compare_server_load {
+    my ($try_server, $spare_server, $lowest_load) = @_;
+
+    my $loadans     = &reply('load',    $try_server);
+    my $userloadans = &reply('userload',$try_server);
+
+    if ($loadans !~ /\d/ && $userloadans !~ /\d/) {
+	next; #didn't get a number from the server
+    }
+
+    my $load;
+    if ($loadans =~ /\d/) {
+	if ($userloadans =~ /\d/) {
+	    #both are numbers, pick the bigger one
+	    $load = ($loadans > $userloadans) ? $loadans 
+		                              : $userloadans;
+	} else {
+	    $load = $loadans;
+	}
+    } else {
+	$load = $userloadans;
+    }
+
+    if (($load =~ /\d/) && ($load < $lowest_load)) {
+	$spare_server = $try_server;
+	$lowest_load  = $load;
+    }
+    return ($spare_server,$lowest_load);
+}
 # --------------------------------------------- Try to change a user's password
 
 sub changepass {
-    my ($uname,$udom,$currentpass,$newpass,$server)=@_;
+    my ($uname,$udom,$currentpass,$newpass,$server,$context)=@_;
     $currentpass = &escape($currentpass);
     $newpass     = &escape($newpass);
-    my $answer = reply("encrypt:passwd:$udom:$uname:$currentpass:$newpass",
+    my $answer = reply("encrypt:passwd:$udom:$uname:$currentpass:$newpass:$context",
 		       $server);
     if (! $answer) {
 	&logthis("No reply on password change request to $server ".
@@ -572,8 +613,8 @@ sub queryauthenticate {
 
 sub authenticate {
     my ($uname,$upass,$udom)=@_;
-    $upass=escape($upass);
-    $uname=~s/\W//g;
+    $upass=&escape($upass);
+    $uname= &LONCAPA::clean_username($uname);
     my $uhome=&homeserver($uname,$udom);
     if (!$uhome) {
 	&logthis("User $uname at $udom is unknown in authenticate");
@@ -648,8 +689,8 @@ sub idget {
 sub idrget {
     my ($udom,@unames)=@_;
     my %returnhash=();
-    foreach (@unames) {
-        $returnhash{$_}=(&userenvironment($udom,$_,'id'))[1];
+    foreach my $uname (@unames) {
+        $returnhash{$uname}=(&userenvironment($udom,$uname,'id'))[1];
     }
     return %returnhash;
 }
@@ -659,22 +700,69 @@ sub idrget {
 sub idput {
     my ($udom,%ids)=@_;
     my %servers=();
-    foreach (keys %ids) {
-	&cput('environment',{'id'=>$ids{$_}},$udom,$_);
-        my $uhom=&homeserver($_,$udom);
+    foreach my $uname (keys(%ids)) {
+	&cput('environment',{'id'=>$ids{$uname}},$udom,$uname);
+        my $uhom=&homeserver($uname,$udom);
         if ($uhom ne 'no_host') {
-            my $id=&escape($ids{$_});
+            my $id=&escape($ids{$uname});
             $id=~tr/A-Z/a-z/;
-            my $unam=&escape($_);
+            my $esc_unam=&escape($uname);
 	    if ($servers{$uhom}) {
-		$servers{$uhom}.='&'.$id.'='.$unam;
+		$servers{$uhom}.='&'.$id.'='.$esc_unam;
             } else {
-                $servers{$uhom}=$id.'='.$unam;
+                $servers{$uhom}=$id.'='.$esc_unam;
             }
         }
     }
-    foreach (keys %servers) {
-        &critical('idput:'.$udom.':'.$servers{$_},$_);
+    foreach my $server (keys(%servers)) {
+        &critical('idput:'.$udom.':'.$servers{$server},$server);
+    }
+}
+
+# ------------------------------------------- get items from domain db files   
+
+sub get_dom {
+    my ($namespace,$storearr,$udom)=@_;
+    my $items='';
+    foreach my $item (@$storearr) {
+        $items.=&escape($item).'&';
+    }
+    $items=~s/\&$//;
+    if (!$udom) { $udom=$env{'user.domain'}; }
+    if (exists($domain_primary{$udom})) {
+        my $uhome=$domain_primary{$udom};
+        my $rep=&reply("getdom:$udom:$namespace:$items",$uhome);
+        my @pairs=split(/\&/,$rep);
+        if ( $#pairs==0 && $pairs[0] =~ /^(con_lost|error|no_such_host)/i) {
+            return @pairs;
+        }
+        my %returnhash=();
+        my $i=0;
+        foreach my $item (@$storearr) {
+            $returnhash{$item}=&thaw_unescape($pairs[$i]);
+            $i++;
+        }
+        return %returnhash;
+    } else {
+        &logthis("get_dom failed - no primary domain server for $udom");
+    }
+}
+
+# -------------------------------------------- put items in domain db files 
+
+sub put_dom {
+    my ($namespace,$storehash,$udom)=@_;
+    if (!$udom) { $udom=$env{'user.domain'}; }
+    if (exists($domain_primary{$udom})) {
+        my $uhome=$domain_primary{$udom};
+        my $items='';
+        foreach my $item (keys(%$storehash)) {
+            $items.=&escape($item).'='.&freeze_escape($$storehash{$item}).'&';
+        }
+        $items=~s/\&$//;
+        return &reply("putdom:$udom:$namespace:$items",$uhome);
+    } else {
+        &logthis("put_dom failed - no primary domain server for $udom");
     }
 }
 
@@ -811,17 +899,32 @@ sub validate_access_key {
 # ------------------------------------- Find the section of student in a course
 sub devalidate_getsection_cache {
     my ($udom,$unam,$courseid)=@_;
-    $courseid=~s/\_/\//g;
-    $courseid=~s/^(\w)/\/$1/;
     my $hashid="$udom:$unam:$courseid";
     &devalidate_cache_new('getsection',$hashid);
 }
 
+sub courseid_to_courseurl {
+    my ($courseid) = @_;
+    #already url style courseid
+    return $courseid if ($courseid =~ m{^/});
+
+    if (exists($env{'course.'.$courseid.'.num'})) {
+	my $cnum = $env{'course.'.$courseid.'.num'};
+	my $cdom = $env{'course.'.$courseid.'.domain'};
+	return "/$cdom/$cnum";
+    }
+
+    my %courseinfo=&Apache::lonnet::coursedescription($courseid);
+    if (exists($courseinfo{'num'})) {
+	return "/$courseinfo{'domain'}/$courseinfo{'num'}";
+    }
+
+    return undef;
+}
+
 sub getsection {
     my ($udom,$unam,$courseid)=@_;
     my $cachetime=1800;
-    $courseid=~s/\_/\//g;
-    $courseid=~s/^(\w)/\/$1/;
 
     my $hashid="$udom:$unam:$courseid";
     my ($result,$cached)=&is_cached_new('getsection',$hashid);
@@ -842,14 +945,13 @@ sub getsection {
     # If there is more than one expired role, choose the one which ended last.
     # If there is a role which has expired, return it.
     #
-    foreach (split(/\&/,&reply('dump:'.$udom.':'.$unam.':roles',
-                        &homeserver($unam,$udom)))) {
-        my ($key,$value)=split(/\=/,$_);
-        $key=&unescape($key);
+    $courseid = &courseid_to_courseurl($courseid);
+    my %roleshash = &dump('roles',$udom,$unam,$courseid);
+    foreach my $key (keys(%roleshash)) {
         next if ($key !~/^\Q$courseid\E(?:\/)*(\w+)*\_st$/);
         my $section=$1;
         if ($key eq $courseid.'_st') { $section=''; }
-        my ($dummy,$end,$start)=split(/\_/,&unescape($value));
+        my ($dummy,$end,$start)=split(/\_/,&unescape($roleshash{$key}));
         my $now=time;
         if (defined($end) && $end && ($now > $end)) {
             $Expired{$end}=$section;
@@ -880,6 +982,7 @@ sub save_cache {
     &purge_remembered();
     #&Apache::loncommon::validate_page();
     undef(%env);
+    undef($env_loaded);
 }
 
 my $to_remember=-1;
@@ -887,10 +990,19 @@ my %remembered;
 my %accessed;
 my $kicks=0;
 my $hits=0;
+sub make_key {
+    my ($name,$id) = @_;
+    if (length($id) > 65 
+	&& length(&escape($id)) > 200) {
+	$id=length($id).':'.&Digest::MD5::md5_hex($id);
+    }
+    return &escape($name.':'.$id);
+}
+
 sub devalidate_cache_new {
     my ($name,$id,$debug) = @_;
     if ($debug) { &Apache::lonnet::logthis("deleting $name:$id"); }
-    $id=&escape($name.':'.$id);
+    $id=&make_key($name,$id);
     $memcache->delete($id);
     delete($remembered{$id});
     delete($accessed{$id});
@@ -898,7 +1010,7 @@ sub devalidate_cache_new {
 
 sub is_cached_new {
     my ($name,$id,$debug) = @_;
-    $id=&escape($name.':'.$id);
+    $id=&make_key($name,$id);
     if (exists($remembered{$id})) {
 	if ($debug) { &Apache::lonnet::logthis("Earyl return $id of $remembered{$id} "); }
 	$accessed{$id}=[&gettimeofday()];
@@ -921,7 +1033,7 @@ sub is_cached_new {
 
 sub do_cache_new {
     my ($name,$id,$value,$time,$debug) = @_;
-    $id=&escape($name.':'.$id);
+    $id=&make_key($name,$id);
     my $setvalue=$value;
     if (!defined($setvalue)) {
 	$setvalue='__undef__';
@@ -930,7 +1042,9 @@ sub do_cache_new {
 	$time=600;
     }
     if ($debug) { &Apache::lonnet::logthis("Setting $id to $value"); }
-    $memcache->set($id,$setvalue,$time);
+    if (!($memcache->set($id,$setvalue,$time))) {
+	&logthis("caching of id -> $id  failed");
+    }
     # need to make a copy of $value
     #&make_room($id,$value,$debug);
     return $value;
@@ -1165,7 +1279,7 @@ sub ssi_body {
     }
     my $output=($filelink=~/^http\:/?&externalssi($filelink):
                                      &ssi($filelink,%form));
-    $output=~s|//(\s*<!--)? BEGIN LON-CAPA Internal.+// END LON-CAPA Internal\s*(-->)?\s||gs;
+    $output=~s|//(\s*<!--)? BEGIN LON-CAPA Internal.+?// END LON-CAPA Internal\s*(-->)?\s||gs;
     $output=~s/^.*?\<body[^\>]*\>//si;
     $output=~s/(.*)\<\/body\s*\>.*?$/$1/si;
     return $output;
@@ -1173,6 +1287,15 @@ sub ssi_body {
 
 # --------------------------------------------------------- Server Side Include
 
+sub absolute_url {
+    my ($host_name) = @_;
+    my $protocol = ($ENV{'SERVER_PORT'} == 443?'https://':'http://');
+    if ($host_name eq '') {
+	$host_name = $ENV{'SERVER_NAME'};
+    }
+    return $protocol.$host_name;
+}
+
 sub ssi {
 
     my ($fn,%form)=@_;
@@ -1184,10 +1307,10 @@ sub ssi {
     $form{'no_update_last_known'}=1;
 
     if (%form) {
-      $request=new HTTP::Request('POST',"http://".$ENV{'HTTP_HOST'}.$fn);
+      $request=new HTTP::Request('POST',&absolute_url().$fn);
       $request->content(join('&',map { &escape($_).'='.&escape($form{$_}) } keys %form));
     } else {
-      $request=new HTTP::Request('GET',"http://".$ENV{'HTTP_HOST'}.$fn);
+      $request=new HTTP::Request('GET',&absolute_url().$fn);
     }
 
     $request->header(Cookie => $ENV{'HTTP_COOKIE'});
@@ -1387,7 +1510,22 @@ sub userfileupload {
         open(my $fh,'>'.$fullpath.'/'.$fname);
         print $fh $env{'form.'.$formname};
         close($fh);
-        return $fullpath.'/'.$fname; 
+        return $fullpath.'/'.$fname;
+    } elsif (($formname eq 'coursecreatorxml') && ($subdir eq 'batchupload')) { #files uploaded to create course page are handled differently
+        my $filepath = 'tmp/addcourse/'.$destudom.'/web/'.$env{'user.name'}.
+                       '_'.$env{'user.domain'}.'/pending';
+        my @parts=split(/\//,$filepath);
+        my $fullpath = $perlvar{'lonDaemons'};
+        for (my $i=0;$i<@parts;$i++) {
+            $fullpath .= '/'.$parts[$i];
+            if ((-e $fullpath)!=1) {
+                mkdir($fullpath,0777);
+            }
+        }
+        open(my $fh,'>'.$fullpath.'/'.$fname);
+        print $fh $env{'form.'.$formname};
+        close($fh);
+        return $fullpath.'/'.$fname;
     }
     
 # Create the directory if not present
@@ -1595,7 +1733,20 @@ sub removeuploadedurl {
 sub removeuserfile {
     my ($docuname,$docudom,$fname)=@_;
     my $home=&homeserver($docuname,$docudom);
-    return &reply("removeuserfile:$docudom/$docuname/$fname",$home);
+    my $result = &reply("removeuserfile:$docudom/$docuname/$fname",$home);
+    if ($result eq 'ok') {
+        if (($fname !~ /\.meta$/) && (&is_portfolio_file($fname))) {
+            my $metafile = $fname.'.meta';
+            my $metaresult = &removeuserfile($docuname,$docudom,$metafile); 
+	    my $url = "/uploaded/$docudom/$docuname/$fname";
+            my ($file,$group) = (&parse_portfolio_url($url))[3,4];
+            my $sqlresult = 
+                &update_portfolio_table($docuname,$docudom,$file,
+                                        'portfolio_metadata',$group,
+                                        'delete');
+        }
+    }
+    return $result;
 }
 
 sub mkdiruserfile {
@@ -1607,8 +1758,23 @@ sub mkdiruserfile {
 sub renameuserfile {
     my ($docuname,$docudom,$old,$new)=@_;
     my $home=&homeserver($docuname,$docudom);
-    return &reply("renameuserfile:$docudom:$docuname:".&escape("$old").':'.
-		  &escape("$new"),$home);
+    my $result = &reply("renameuserfile:$docudom:$docuname:".
+                        &escape("$old").':'.&escape("$new"),$home);
+    if ($result eq 'ok') {
+        if (($old !~ /\.meta$/) && (&is_portfolio_file($old))) {
+            my $oldmeta = $old.'.meta';
+            my $newmeta = $new.'.meta';
+            my $metaresult = 
+                &renameuserfile($docuname,$docudom,$oldmeta,$newmeta);
+	    my $url = "/uploaded/$docudom/$docuname/$old";
+            my ($file,$group) = (&parse_portfolio_url($url))[3,4];
+            my $sqlresult = 
+                &update_portfolio_table($docuname,$docudom,$file,
+                                        'portfolio_metadata',$group,
+                                        'delete');
+        }
+    }
+    return $result;
 }
 
 # ------------------------------------------------------------------------- Log
@@ -1634,8 +1800,7 @@ sub flushcourselogs {
 # times and course titles for all courseids
 #
     my %courseidbuffer=();
-    foreach (keys %courselogs) {
-        my $crsid=$_;
+    foreach my $crsid (keys %courselogs) {
         if (&reply('log:'.$coursedombuf{$crsid}.':'.$coursenumbuf{$crsid}.':'.
 		          &escape($courselogs{$crsid}),
 		          $coursehombuf{$crsid}) eq 'ok') {
@@ -1651,19 +1816,19 @@ sub flushcourselogs {
         if ($courseidbuffer{$coursehombuf{$crsid}}) {
            $courseidbuffer{$coursehombuf{$crsid}}.='&'.
 			 &escape($crsid).'='.&escape($coursedescrbuf{$crsid}).
-                         ':'.&escape($courseinstcodebuf{$crsid}).':'.&escape($courseownerbuf{$crsid});
+                         ':'.&escape($courseinstcodebuf{$crsid}).':'.&escape($courseownerbuf{$crsid}).':'.&escape($coursetypebuf{$crsid});
         } else {
            $courseidbuffer{$coursehombuf{$crsid}}=
 			 &escape($crsid).'='.&escape($coursedescrbuf{$crsid}).
-                         ':'.&escape($courseinstcodebuf{$crsid}).':'.&escape($courseownerbuf{$crsid});
+                         ':'.&escape($courseinstcodebuf{$crsid}).':'.&escape($courseownerbuf{$crsid}).':'.&escape($coursetypebuf{$crsid});
         }
     }
 #
 # Write course id database (reverse lookup) to homeserver of courses 
 # Is used in pickcourse
 #
-    foreach (keys %courseidbuffer) {
-        &courseidput($hostdom{$_},$courseidbuffer{$_},$_);
+    foreach my $crsid (keys(%courseidbuffer)) {
+        &courseidput($hostdom{$crsid},$courseidbuffer{$crsid},$crsid);
     }
 #
 # File accesses
@@ -1672,7 +1837,8 @@ sub flushcourselogs {
     foreach my $entry (keys(%accesshash)) {
         if ($entry =~ /___count$/) {
             my ($dom,$name);
-            ($dom,$name,undef)=($entry=~m:___(\w+)/(\w+)/(.*)___count$:);
+            ($dom,$name,undef)=
+		($entry=~m{___($match_domain)/($match_name)/(.*)___count$});
             if (! defined($dom) || $dom eq '' || 
                 ! defined($name) || $name eq '') {
                 my $cid = $env{'request.course.id'};
@@ -1693,7 +1859,7 @@ sub flushcourselogs {
                 }
             }
         } else {
-            my ($dom,$name) = ($entry=~m:___(\w+)/(\w+)/(.*)___(\w+)$:);
+            my ($dom,$name) = ($entry=~m{___($match_domain)/($match_name)/(.*)___(\w+)$});
             my %temphash=($entry => $accesshash{$entry});
             if (&put('nohist_resevaldata',\%temphash,$dom,$name) eq 'ok') {
                 delete $accesshash{$entry};
@@ -1704,8 +1870,7 @@ sub flushcourselogs {
 # Roles
 # Reverse lookup of user roles for course faculty/staff and co-authorship
 #
-    foreach (keys %userrolehash) {
-        my $entry=$_;
+    foreach my $entry (keys(%userrolehash)) {
         my ($role,$uname,$udom,$runame,$rudom,$rsec)=
 	    split(/\:/,$entry);
         if (&Apache::lonnet::put('nohist_userroles',
@@ -1758,6 +1923,8 @@ sub courselog {
        $env{'course.'.$env{'request.course.id'}.'.internal.coursecode'};
     $courseownerbuf{$env{'request.course.id'}}=
        $env{'course.'.$env{'request.course.id'}.'.internal.courseowner'};
+    $coursetypebuf{$env{'request.course.id'}}=
+       $env{'course.'.$env{'request.course.id'}.'.type'};
     if (defined $courselogs{$env{'request.course.id'}}) {
 	$courselogs{$env{'request.course.id'}}.='&'.$what;
     } else {
@@ -1775,9 +1942,9 @@ sub courseacclog {
     if ($fnsymb=~/(problem|exam|quiz|assess|survey|form|task|page)$/) {
         $what.=':POST';
         # FIXME: Probably ought to escape things....
-	foreach (keys %env) {
-            if ($_=~/^form\.(.*)/) {
-		$what.=':'.$1.'='.$env{$_};
+	foreach my $key (keys(%env)) {
+            if ($key=~/^form\.(.*)/) {
+		$what.=':'.$1.'='.$env{$key};
             }
         }
     } elsif ($fnsymb =~ m:^/adm/searchcat:) {
@@ -1839,27 +2006,24 @@ sub get_course_adv_roles {
     $cid=$env{'request.course.id'} unless (defined($cid));
     my %coursehash=&coursedescription($cid);
     my %nothide=();
-    foreach (split(/\s*\,\s*/,$coursehash{'nothideprivileged'})) {
-	$nothide{join(':',split(/[\@\:]/,$_))}=1;
+    foreach my $user (split(/\s*\,\s*/,$coursehash{'nothideprivileged'})) {
+	$nothide{join(':',split(/[\@\:]/,$user))}=1;
     }
     my %returnhash=();
     my %dumphash=
             &dump('nohist_userroles',$coursehash{'domain'},$coursehash{'num'});
     my $now=time;
-    foreach (keys %dumphash) {
-	my ($tend,$tstart)=split(/\:/,$dumphash{$_});
+    foreach my $entry (keys %dumphash) {
+	my ($tend,$tstart)=split(/\:/,$dumphash{$entry});
         if (($tstart) && ($tstart<0)) { next; }
         if (($tend) && ($tend<$now)) { next; }
         if (($tstart) && ($now<$tstart)) { next; }
-        my ($role,$username,$domain,$section)=split(/\:/,$_);
+        my ($role,$username,$domain,$section)=split(/\:/,$entry);
 	if ($username eq '' || $domain eq '') { next; }
 	if ((&privileged($username,$domain)) && 
 	    (!$nothide{$username.':'.$domain})) { next; }
 	if ($role eq 'cr') { next; }
         my $key=&plaintext($role);
-	if ($role =~ /^cr/) {
-	    $key=(split('/',$role))[3];
-	}
         if ($section) { $key.=' (Sec/Grp '.$section.')'; }
         if ($returnhash{$key}) {
 	    $returnhash{$key}.=','.$username.':'.$domain;
@@ -1878,12 +2042,12 @@ sub get_my_roles {
             &dump('nohist_userroles',$udom,$uname);
     my %returnhash=();
     my $now=time;
-    foreach (keys %dumphash) {
-	my ($tend,$tstart)=split(/\:/,$dumphash{$_});
+    foreach my $entry (keys(%dumphash)) {
+	my ($tend,$tstart)=split(/\:/,$dumphash{$entry});
         if (($tstart) && ($tstart<0)) { next; }
         if (($tend) && ($tend<$now)) { next; }
         if (($tstart) && ($now<$tstart)) { next; }
-        my ($role,$username,$domain,$section)=split(/\:/,$_);
+        my ($role,$username,$domain,$section)=split(/\:/,$entry);
 	$returnhash{$username.':'.$domain.':'.$role}=$tstart.':'.$tend;
      }
     return %returnhash;
@@ -1904,7 +2068,7 @@ sub getannounce {
 
     if (open(my $fh,$perlvar{'lonDocRoot'}.'/announcement.txt')) {
 	my $announcement='';
-	while (<$fh>) { $announcement .=$_; }
+	while (my $line = <$fh>) { $announcement .= $line; }
 	close($fh);
 	if ($announcement=~/\w/) { 
 	    return 
@@ -1928,18 +2092,18 @@ sub courseidput {
 }
 
 sub courseiddump {
-    my ($domfilter,$descfilter,$sincefilter,$instcodefilter,$ownerfilter,$coursefilter,$hostidflag,$hostidref)=@_;
+    my ($domfilter,$descfilter,$sincefilter,$instcodefilter,$ownerfilter,$coursefilter,$hostidflag,$hostidref,$typefilter,$regexp_ok)=@_;
     my %returnhash=();
     unless ($domfilter) { $domfilter=''; }
     foreach my $tryserver (keys %libserv) {
         if ( ($hostidflag == 1 && grep/^$tryserver$/,@{$hostidref}) || (!defined($hostidflag)) ) {
 	    if ((!$domfilter) || ($hostdom{$tryserver} eq $domfilter)) {
-	        foreach (
+	        foreach my $line (
                  split(/\&/,&reply('courseiddump:'.$hostdom{$tryserver}.':'.
 			       $sincefilter.':'.&escape($descfilter).':'.
-                               &escape($instcodefilter).':'.&escape($ownerfilter).':'.&escape($coursefilter),
+                               &escape($instcodefilter).':'.&escape($ownerfilter).':'.&escape($coursefilter).':'.&escape($typefilter).':'.&escape($regexp_ok),
                                $tryserver))) {
-		    my ($key,$value)=split(/\=/,$_);
+		    my ($key,$value)=split(/\=/,$line,2);
                     if (($key) && ($value)) {
 		        $returnhash{&unescape($key)}=$value;
                     }
@@ -1968,8 +2132,8 @@ sub dcmaildump {
                                                          &escape($enddate).':';
 	my @esc_senders=map { &escape($_)} @$senders;
 	$cmd.=&escape(join('&',@esc_senders));
-	foreach (split(/\&/,&reply($cmd,$domain_primary{$dom}))) {
-            my ($key,$value) = split(/\=/,$_);
+	foreach my $line (split(/\&/,&reply($cmd,$domain_primary{$dom}))) {
+            my ($key,$value) = split(/\=/,$line,2);
             if (($key) && ($value)) {
                 $returnhash{&unescape($key)} = &unescape($value);
             }
@@ -1992,11 +2156,11 @@ sub get_domain_roles {
     foreach my $tryserver (keys(%libserv)) {
         if ($hostdom{$tryserver} eq $dom) {
             %{$personnel{$tryserver}}=();
-            foreach (
+            foreach my $line (
                 split(/\&/,&reply('domrolesdump:'.$dom.':'.
                    &escape($startdate).':'.&escape($enddate).':'.
                    &escape($rolelist), $tryserver))) {
-                my($key,$value) = split(/\=/,$_);
+                my ($key,$value) = split(/\=/,$line,2);
                 if (($key) && ($value)) {
                     $personnel{$tryserver}{&unescape($key)} = &unescape($value);
                 }
@@ -2010,7 +2174,7 @@ sub get_domain_roles {
 
 sub get_first_access {
     my ($type,$argsymb)=@_;
-    my ($symb,$courseid,$udom,$uname)=&Apache::lonxml::whichuser();
+    my ($symb,$courseid,$udom,$uname)=&whichuser();
     if ($argsymb) { $symb=$argsymb; }
     my ($map,$id,$res)=&decode_symb($symb);
     if ($type eq 'map') {
@@ -2024,7 +2188,7 @@ sub get_first_access {
 
 sub set_first_access {
     my ($type)=@_;
-    my ($symb,$courseid,$udom,$uname)=&Apache::lonxml::whichuser();
+    my ($symb,$courseid,$udom,$uname)=&whichuser();
     my ($map,$id,$res)=&decode_symb($symb);
     if ($type eq 'map') {
 	$res=&symbread($map);
@@ -2218,27 +2382,27 @@ sub hash2str {
 sub hashref2str {
   my ($hashref)=@_;
   my $result='__HASH_REF__';
-  foreach (sort(keys(%$hashref))) {
-    if (ref($_) eq 'ARRAY') {
-      $result.=&arrayref2str($_).'=';
-    } elsif (ref($_) eq 'HASH') {
-      $result.=&hashref2str($_).'=';
-    } elsif (ref($_)) {
+  foreach my $key (sort(keys(%$hashref))) {
+    if (ref($key) eq 'ARRAY') {
+      $result.=&arrayref2str($key).'=';
+    } elsif (ref($key) eq 'HASH') {
+      $result.=&hashref2str($key).'=';
+    } elsif (ref($key)) {
       $result.='=';
-      #print("Got a ref of ".(ref($_))." skipping.");
+      #print("Got a ref of ".(ref($key))." skipping.");
     } else {
-	if ($_) {$result.=&escape($_).'=';} else { last; }
+	if ($key) {$result.=&escape($key).'=';} else { last; }
     }
 
-    if(ref($hashref->{$_}) eq 'ARRAY') {
-      $result.=&arrayref2str($hashref->{$_}).'&';
-    } elsif(ref($hashref->{$_}) eq 'HASH') {
-      $result.=&hashref2str($hashref->{$_}).'&';
-    } elsif(ref($hashref->{$_})) {
+    if(ref($hashref->{$key}) eq 'ARRAY') {
+      $result.=&arrayref2str($hashref->{$key}).'&';
+    } elsif(ref($hashref->{$key}) eq 'HASH') {
+      $result.=&hashref2str($hashref->{$key}).'&';
+    } elsif(ref($hashref->{$key})) {
        $result.='&';
-      #print("Got a ref of ".(ref($hashref->{$_}))." skipping.");
+      #print("Got a ref of ".(ref($hashref->{$key}))." skipping.");
     } else {
-      $result.=&escape($hashref->{$_}).'&';
+      $result.=&escape($hashref->{$key}).'&';
     }
   }
   $result=~s/\&$//;
@@ -2518,8 +2682,8 @@ sub store {
     $$storehash{'host'}=$perlvar{'lonHostID'};
 
     my $namevalue='';
-    foreach (keys %$storehash) {
-        $namevalue.=&escape($_).'='.&freeze_escape($$storehash{$_}).'&';
+    foreach my $key (keys(%$storehash)) {
+        $namevalue.=&escape($key).'='.&freeze_escape($$storehash{$key}).'&';
     }
     $namevalue=~s/\&$//;
     &courselog($symb.':'.$stuname.':'.$domain.':STORE:'.$namevalue);
@@ -2554,8 +2718,8 @@ sub cstore {
     $$storehash{'host'}=$perlvar{'lonHostID'};
 
     my $namevalue='';
-    foreach (keys %$storehash) {
-        $namevalue.=&escape($_).'='.&freeze_escape($$storehash{$_}).'&';
+    foreach my $key (keys(%$storehash)) {
+        $namevalue.=&escape($key).'='.&freeze_escape($$storehash{$key}).'&';
     }
     $namevalue=~s/\&$//;
     &courselog($symb.':'.$stuname.':'.$domain.':CSTORE:'.$namevalue);
@@ -2587,14 +2751,14 @@ sub restore {
     my $answer=&reply("restore:$domain:$stuname:$namespace:$symb","$home");
 
     my %returnhash=();
-    foreach (split(/\&/,$answer)) {
-	my ($name,$value)=split(/\=/,$_);
+    foreach my $line (split(/\&/,$answer)) {
+	my ($name,$value)=split(/\=/,$line);
         $returnhash{&unescape($name)}=&thaw_unescape($value);
     }
     my $version;
     for ($version=1;$version<=$returnhash{'version'};$version++) {
-       foreach (split(/\:/,$returnhash{$version.':keys'})) {
-          $returnhash{$_}=$returnhash{$version.':'.$_};
+       foreach my $item (split(/\:/,$returnhash{$version.':keys'})) {
+          $returnhash{$item}=$returnhash{$version.':'.$item};
        }
     }
     return %returnhash;
@@ -2634,12 +2798,16 @@ sub coursedescription {
     if (!$args->{'one_time'}) {
 	$envhash{'course.'.$normalid.'.last_cache'}=time;
     }
+
     if ($chome ne 'no_host') {
        %returnhash=&dump('environment',$cdomain,$cnum);
        if (!exists($returnhash{'con_lost'})) {
            $returnhash{'home'}= $chome;
 	   $returnhash{'domain'} = $cdomain;
 	   $returnhash{'num'} = $cnum;
+           if (!defined($returnhash{'type'})) {
+               $returnhash{'type'} = 'Course';
+           }
            while (my ($name,$value) = each %returnhash) {
                $envhash{'course.'.$normalid.'.'.$name}=$value;
            }
@@ -2666,9 +2834,9 @@ sub privileged {
     if (($rolesdump eq 'con_lost') || ($rolesdump eq '')) { return 0; }
     my $now=time;
     if ($rolesdump ne '') {
-        foreach (split(/&/,$rolesdump)) {
-	    if ($_!~/^rolesdef_/) {
-		my ($area,$role)=split(/=/,$_);
+        foreach my $entry (split(/&/,$rolesdump)) {
+	    if ($entry!~/^rolesdef_/) {
+		my ($area,$role)=split(/=/,$entry);
 		$area=~s/\_\w\w$//;
 		my ($trole,$tend,$tstart)=split(/_/,$role);
 		if (($trole eq 'dc') || ($trole eq 'su')) {
@@ -2696,18 +2864,18 @@ sub rolesinit {
     my %allroles=();
     my %allgroups=();   
     my $now=time;
-    my $userroles="user.login.time=$now\n";
+    my %userroles = ('user.login.time' => $now);
     my $group_privs;
 
     if ($rolesdump ne '') {
-        foreach (split(/&/,$rolesdump)) {
-	  if ($_!~/^rolesdef_/) {
-            my ($area,$role)=split(/=/,$_);
+        foreach my $entry (split(/&/,$rolesdump)) {
+	  if ($entry!~/^rolesdef_/) {
+            my ($area,$role)=split(/=/,$entry);
 	    $area=~s/\_\w\w$//;
             my ($trole,$tend,$tstart,$group_privs);
 	    if ($role=~/^cr/) { 
-		if ($role=~m|^(cr/\w+/\w+/[a-zA-Z0-9]+)_(.*)$|) {
-		    ($trole,my $trest)=($role=~m|^(cr/\w+/\w+/[a-zA-Z0-9]+)_(.*)$|);
+		if ($role=~m|^(cr/$match_domain/$match_username/[a-zA-Z0-9]+)_(.*)$|) {
+		    ($trole,my $trest)=($role=~m|^(cr/$match_domain/$match_username/[a-zA-Z0-9]+)_(.*)$|);
 		    ($tend,$tstart)=split('_',$trest);
 		} else {
 		    $trole=$role;
@@ -2719,7 +2887,9 @@ sub rolesinit {
 	    } else {
 		($trole,$tend,$tstart)=split(/_/,$role);
 	    }
-            $userroles.=&set_arearole($trole,$area,$tstart,$tend,$domain,$username);
+	    my %new_role = &set_arearole($trole,$area,$tstart,$tend,$domain,
+					 $username);
+	    @userroles{keys(%new_role)} = @new_role{keys(%new_role)};
             if (($tend!=0) && ($tend<$now)) { $trole=''; }
             if (($tstart!=0) && ($tstart>$now)) { $trole=''; }
             if (($area ne '') && ($trole ne '')) {
@@ -2735,19 +2905,19 @@ sub rolesinit {
             }
           }
         }
-        my ($author,$adv) = &set_userprivs(\$userroles,\%allroles,\%allgroups);
-        $userroles.='user.adv='.$adv."\n".
-	            'user.author='.$author."\n";
+        my ($author,$adv) = &set_userprivs(\%userroles,\%allroles,\%allgroups);
+        $userroles{'user.adv'}    = $adv;
+	$userroles{'user.author'} = $author;
         $env{'user.adv'}=$adv;
     }
-    return $userroles;  
+    return \%userroles;  
 }
 
 sub set_arearole {
     my ($trole,$area,$tstart,$tend,$domain,$username) = @_;
 # log the associated role with the area
     &userrolelog($trole,$username,$domain,$area,$tstart,$tend);
-    return 'user.role.'.$trole.'.'.$area.'='.$tstart.'.'.$tend."\n";
+    return ('user.role.'.$trole.'.'.$area => $tstart.'.'.$tend);
 }
 
 sub custom_roleprivs {
@@ -2784,7 +2954,7 @@ sub group_roleprivs {
     if (($tend!=0) && ($tend<$now)) { $access = 0; }
     if (($tstart!=0) && ($tstart>$now)) { $access=0; }
     if ($access) {
-        my ($course,$group) = ($area =~ m|(/\w+/\w+)/([^/]+)$|);
+        my ($course,$group) = ($area =~ m|(/$match_domain/$match_courseid)/([^/]+)$|);
         $$allgroups{$course}{$group} .=':'.$group_privs;
     }
 }
@@ -2815,7 +2985,7 @@ sub set_userprivs {
     if (keys(%{$allgroups}) > 0) {
         foreach my $role (keys %{$allroles}) {
             my ($trole,$area,$sec,$extendedarea);
-            if ($role =~ m|^(\w+)\.(/\w+/\w+)(/?\w*)|) {
+            if ($role =~ m-^(\w+|cr/$match_domain/$match_username/\w+)\.(/$match_domain/$match_courseid)(/?\w*)-) {
                 $trole = $1;
                 $area = $2;
                 $sec = $3;
@@ -2830,15 +3000,15 @@ sub set_userprivs {
             }
         }
     }
-    foreach (keys(%grouproles)) {
-        $$allroles{$_} = $grouproles{$_};
+    foreach my $group (keys(%grouproles)) {
+        $$allroles{$group} = $grouproles{$group};
     }
-    foreach (keys %{$allroles}) {
-        my %thesepriv=();
-        if (($_=~/^au/) || ($_=~/^ca/)) { $author=1; }
-        foreach (split(/:/,$$allroles{$_})) {
-            if ($_ ne '') {
-                my ($privilege,$restrictions)=split(/&/,$_);
+    foreach my $role (keys(%{$allroles})) {
+        my %thesepriv;
+        if (($role=~/^au/) || ($role=~/^ca/)) { $author=1; }
+        foreach my $item (split(/:/,$$allroles{$role})) {
+            if ($item ne '') {
+                my ($privilege,$restrictions)=split(/&/,$item);
                 if ($restrictions eq '') {
                     $thesepriv{$privilege}='F';
                 } elsif ($thesepriv{$privilege} ne 'F') {
@@ -2848,8 +3018,10 @@ sub set_userprivs {
             }
         }
         my $thesestr='';
-        foreach (keys %thesepriv) { $thesestr.=':'.$_.'&'.$thesepriv{$_}; }
-        $$userroles.='user.priv.'.$_.'='.$thesestr."\n";
+        foreach my $priv (keys(%thesepriv)) {
+	    $thesestr.=':'.$priv.'&'.$thesepriv{$priv};
+	}
+        $userroles->{'user.priv.'.$role} = $thesestr;
     }
     return ($author,$adv);
 }
@@ -2859,8 +3031,8 @@ sub set_userprivs {
 sub get {
    my ($namespace,$storearr,$udomain,$uname)=@_;
    my $items='';
-   foreach (@$storearr) {
-       $items.=escape($_).'&';
+   foreach my $item (@$storearr) {
+       $items.=&escape($item).'&';
    }
    $items=~s/\&$//;
    if (!$udomain) { $udomain=$env{'user.domain'}; }
@@ -2874,8 +3046,8 @@ sub get {
    }
    my %returnhash=();
    my $i=0;
-   foreach (@$storearr) {
-      $returnhash{$_}=&thaw_unescape($pairs[$i]);
+   foreach my $item (@$storearr) {
+      $returnhash{$item}=&thaw_unescape($pairs[$i]);
       $i++;
    }
    return %returnhash;
@@ -2886,8 +3058,8 @@ sub get {
 sub del {
    my ($namespace,$storearr,$udomain,$uname)=@_;
    my $items='';
-   foreach (@$storearr) {
-       $items.=escape($_).'&';
+   foreach my $item (@$storearr) {
+       $items.=&escape($item).'&';
    }
    $items=~s/\&$//;
    if (!$udomain) { $udomain=$env{'user.domain'}; }
@@ -2900,6 +3072,30 @@ sub del {
 # -------------------------------------------------------------- dump interface
 
 sub dump {
+    my ($namespace,$udomain,$uname,$regexp,$range)=@_;
+    if (!$udomain) { $udomain=$env{'user.domain'}; }
+    if (!$uname) { $uname=$env{'user.name'}; }
+    my $uhome=&homeserver($uname,$udomain);
+    if ($regexp) {
+	$regexp=&escape($regexp);
+    } else {
+	$regexp='.';
+    }
+    my $rep=&reply("dump:$udomain:$uname:$namespace:$regexp:$range",$uhome);
+    my @pairs=split(/\&/,$rep);
+    my %returnhash=();
+    foreach my $item (@pairs) {
+	my ($key,$value)=split(/=/,$item,2);
+	$key = &unescape($key);
+	next if ($key =~ /^error: 2 /);
+	$returnhash{$key}=&thaw_unescape($value);
+    }
+    return %returnhash;
+}
+
+# --------------------------------------------------------- dumpstore interface
+
+sub dumpstore {
    my ($namespace,$udomain,$uname,$regexp,$range)=@_;
    if (!$udomain) { $udomain=$env{'user.domain'}; }
    if (!$uname) { $uname=$env{'user.name'}; }
@@ -2909,23 +3105,17 @@ sub dump {
    } else {
        $regexp='.';
    }
-   my $rep=reply("dump:$udomain:$uname:$namespace:$regexp:$range",$uhome);
+   my $rep=&reply("dump:$udomain:$uname:$namespace:$regexp:$range",$uhome);
    my @pairs=split(/\&/,$rep);
    my %returnhash=();
-   foreach (@pairs) {
-      my ($key,$value)=split(/=/,$_,2);
-      $returnhash{unescape($key)}=&thaw_unescape($value);
+   foreach my $item (@pairs) {
+       my ($key,$value)=split(/=/,$item,2);
+       next if ($key =~ /^error: 2 /);
+       $returnhash{$key}=&thaw_unescape($value);
    }
    return %returnhash;
 }
 
-# --------------------------------------------------------- dumpstore interface
-
-sub dumpstore {
-   my ($namespace,$udomain,$uname,$regexp,$range)=@_;
-   return &dump($namespace,$udomain,$uname,$regexp,$range);
-}
-
 # -------------------------------------------------------------- keys interface
 
 sub getkeys {
@@ -2935,8 +3125,9 @@ sub getkeys {
    my $uhome=&homeserver($uname,$udomain);
    my $rep=reply("keys:$udomain:$uname:$namespace",$uhome);
    my @keyarray=();
-   foreach (split(/\&/,$rep)) {
-      push (@keyarray,&unescape($_));
+   foreach my $key (split(/\&/,$rep)) {
+      next if ($key =~ /^error: 2 /);
+      push(@keyarray,&unescape($key));
    }
    return @keyarray;
 }
@@ -2956,15 +3147,15 @@ sub currentdump {
    if ($rep eq "unknown_cmd") { 
        # an old lond will not know currentdump
        # Do a dump and make it look like a currentdump
-       my @tmp = &dump($courseid,$sdom,$sname,'.');
+       my @tmp = &dumpstore($courseid,$sdom,$sname,'.');
        return if ($tmp[0] =~ /^(error:|no_such_host)/);
        my %hash = @tmp;
        @tmp=();
        %returnhash = %{&convert_dump_to_currentdump(\%hash)};
    } else {
        my @pairs=split(/\&/,$rep);
-       foreach (@pairs) {
-           my ($key,$value)=split(/=/,$_);
+       foreach my $pair (@pairs) {
+           my ($key,$value)=split(/=/,$pair,2);
            my ($symb,$param) = split(/:/,$key);
            $returnhash{&unescape($symb)}->{&unescape($param)} = 
                                                         &thaw_unescape($value);
@@ -2981,6 +3172,8 @@ sub convert_dump_to_currentdump{
     # we might run in to problems with parameter names =~ /^v\./
     while (my ($key,$value) = each(%hash)) {
         my ($v,$symb,$param) = split(/:/,$key);
+	$symb  = &unescape($symb);
+	$param = &unescape($param);
         next if ($v eq 'version' || $symb eq 'keys');
         next if (exists($returnhash{$symb}) &&
                  exists($returnhash{$symb}->{$param}) &&
@@ -3042,8 +3235,8 @@ sub put {
    if (!$uname) { $uname=$env{'user.name'}; }
    my $uhome=&homeserver($uname,$udomain);
    my $items='';
-   foreach (keys %$storehash) {
-       $items.=&escape($_).'='.&freeze_escape($$storehash{$_}).'&';
+   foreach my $item (keys(%$storehash)) {
+       $items.=&escape($item).'='.&freeze_escape($$storehash{$item}).'&';
    }
    $items=~s/\&$//;
    return &reply("put:$udomain:$uname:$namespace:$items",$uhome);
@@ -3095,22 +3288,22 @@ sub old_putstore {
     if (!$uname) { $uname=$env{'user.name'}; }
     my $uhome=&homeserver($uname,$udomain);
     my %newstorehash;
-    foreach (keys %$storehash) {
-	my $key = $version.':'.&escape($symb).':'.$_;
-	$newstorehash{$key} = $storehash->{$_};
+    foreach my $item (keys(%$storehash)) {
+	my $key = $version.':'.&escape($symb).':'.$item;
+	$newstorehash{$key} = $storehash->{$item};
     }
     my $items='';
     my %allitems = ();
-    foreach (keys %newstorehash) {
-	if ($_ =~ m/^([^\:]+):([^\:]+):([^\:]+)$/) {
+    foreach my $item (keys(%newstorehash)) {
+	if ($item =~ m/^([^\:]+):([^\:]+):([^\:]+)$/) {
 	    my $key = $1.':keys:'.$2;
 	    $allitems{$key} .= $3.':';
 	}
-	$items.=$_.'='.&freeze_escape($newstorehash{$_}).'&';
+	$items.=$item.'='.&freeze_escape($newstorehash{$item}).'&';
     }
-    foreach (keys %allitems) {
-	$allitems{$_} =~ s/\:$//;
-	$items.= $_.'='.$allitems{$_}.'&';
+    foreach my $item (keys(%allitems)) {
+	$allitems{$item} =~ s/\:$//;
+	$items.= $item.'='.$allitems{$item}.'&';
     }
     $items=~s/\&$//;
     return &reply("put:$udomain:$uname:$namespace:$items",$uhome);
@@ -3124,8 +3317,8 @@ sub cput {
    if (!$uname) { $uname=$env{'user.name'}; }
    my $uhome=&homeserver($uname,$udomain);
    my $items='';
-   foreach (keys %$storehash) {
-       $items.=&escape($_).'='.&freeze_escape($$storehash{$_}).'&';
+   foreach my $item (keys(%$storehash)) {
+       $items.=&escape($item).'='.&freeze_escape($$storehash{$item}).'&';
    }
    $items=~s/\&$//;
    return &critical("put:$udomain:$uname:$namespace:$items",$uhome);
@@ -3136,8 +3329,8 @@ sub cput {
 sub eget {
    my ($namespace,$storearr,$udomain,$uname)=@_;
    my $items='';
-   foreach (@$storearr) {
-       $items.=escape($_).'&';
+   foreach my $item (@$storearr) {
+       $items.=&escape($item).'&';
    }
    $items=~s/\&$//;
    if (!$udomain) { $udomain=$env{'user.domain'}; }
@@ -3147,8 +3340,8 @@ sub eget {
    my @pairs=split(/\&/,$rep);
    my %returnhash=();
    my $i=0;
-   foreach (@$storearr) {
-      $returnhash{$_}=&thaw_unescape($pairs[$i]);
+   foreach my $item (@$storearr) {
+      $returnhash{$item}=&thaw_unescape($pairs[$i]);
       $i++;
    }
    return %returnhash;
@@ -3156,12 +3349,15 @@ sub eget {
 
 # ------------------------------------------------------------ tmpput interface
 sub tmpput {
-    my ($storehash,$server)=@_;
+    my ($storehash,$server,$context)=@_;
     my $items='';
-    foreach (keys(%$storehash)) {
-	$items.=&escape($_).'='.&freeze_escape($$storehash{$_}).'&';
+    foreach my $item (keys(%$storehash)) {
+	$items.=&escape($item).'='.&freeze_escape($$storehash{$item}).'&';
     }
     $items=~s/\&$//;
+    if (defined($context)) {
+        $items .= ':'.&escape($context);
+    }
     return &reply("tmpput:$items",$server);
 }
 
@@ -3185,21 +3381,266 @@ sub tmpdel {
     return &reply("tmpdel:$token",$server);
 }
 
+# -------------------------------------------------- portfolio access checking
+
+sub portfolio_access {
+    my ($requrl) = @_;
+    my (undef,$udom,$unum,$file_name,$group) = &parse_portfolio_url($requrl);
+    my $result = &get_portfolio_access($udom,$unum,$file_name,$group);
+    if ($result) {
+        my %setters;
+        if ($env{'user.name'} eq 'public' && $env{'user.domain'} eq 'public') {
+            my ($startblock,$endblock) =
+                &Apache::loncommon::blockcheck(\%setters,'port',$unum,$udom);
+            if ($startblock && $endblock) {
+                return 'B';
+            }
+        } else {
+            my ($startblock,$endblock) =
+                &Apache::loncommon::blockcheck(\%setters,'port');
+            if ($startblock && $endblock) {
+                return 'B';
+            }
+        }
+    }
+    if ($result eq 'ok') {
+       return 'F';
+    } elsif ($result =~ /^[^:]+:guest_/) {
+       return 'A';
+    }
+    return '';
+}
+
+sub get_portfolio_access {
+    my ($udom,$unum,$file_name,$group,$access_hash) = @_;
+
+    if (!ref($access_hash)) {
+	my $current_perms = &get_portfile_permissions($udom,$unum);
+	my %access_controls = &get_access_controls($current_perms,$group,
+						   $file_name);
+	$access_hash = $access_controls{$file_name};
+    }
+
+    my ($public,$guest,@domains,@users,@courses,@groups);
+    my $now = time;
+    if (ref($access_hash) eq 'HASH') {
+        foreach my $key (keys(%{$access_hash})) {
+            my ($num,$scope,$end,$start) = ($key =~ /^([^:]+):([a-z]+)_(\d*)_?(\d*)$/);
+            if ($start > $now) {
+                next;
+            }
+            if ($end && $end<$now) {
+                next;
+            }
+            if ($scope eq 'public') {
+                $public = $key;
+                last;
+            } elsif ($scope eq 'guest') {
+                $guest = $key;
+            } elsif ($scope eq 'domains') {
+                push(@domains,$key);
+            } elsif ($scope eq 'users') {
+                push(@users,$key);
+            } elsif ($scope eq 'course') {
+                push(@courses,$key);
+            } elsif ($scope eq 'group') {
+                push(@groups,$key);
+            }
+        }
+        if ($public) {
+            return 'ok';
+        }
+        if ($env{'user.name'} eq 'public' && $env{'user.domain'} eq 'public') {
+            if ($guest) {
+                return $guest;
+            }
+        } else {
+            if (@domains > 0) {
+                foreach my $domkey (@domains) {
+                    if (ref($access_hash->{$domkey}{'dom'}) eq 'ARRAY') {
+                        if (grep(/^\Q$env{'user.domain'}\E$/,@{$access_hash->{$domkey}{'dom'}})) {
+                            return 'ok';
+                        }
+                    }
+                }
+            }
+            if (@users > 0) {
+                foreach my $userkey (@users) {
+                    if (ref($access_hash->{$userkey}{'users'}) eq 'ARRAY') {
+                        foreach my $item (@{$access_hash->{$userkey}{'users'}}) {
+                            if (ref($item) eq 'HASH') {
+                                if (($item->{'uname'} eq $env{'user.name'}) &&
+                                    ($item->{'udom'} eq $env{'user.domain'})) {
+                                    return 'ok';
+                                }
+                            }
+                        }
+                    } 
+                }
+            }
+            my %roleshash;
+            my @courses_and_groups = @courses;
+            push(@courses_and_groups,@groups); 
+            if (@courses_and_groups > 0) {
+                my (%allgroups,%allroles); 
+                my ($start,$end,$role,$sec,$group);
+                foreach my $envkey (%env) {
+                    if ($envkey =~ m-^user\.role\.(gr|cc|in|ta|ep|st)\./($match_domain)/($match_courseid)/?([^/]*)$-) {
+                        my $cid = $2.'_'.$3; 
+                        if ($1 eq 'gr') {
+                            $group = $4;
+                            $allgroups{$cid}{$group} = $env{$envkey};
+                        } else {
+                            if ($4 eq '') {
+                                $sec = 'none';
+                            } else {
+                                $sec = $4;
+                            }
+                            $allroles{$cid}{$1}{$sec} = $env{$envkey};
+                        }
+                    } elsif ($envkey =~ m-^user\.role\./cr/($match_domain/$match_username/\w*)./($match_domain)/($match_courseid)/?([^/]*)$-) {
+                        my $cid = $2.'_'.$3;
+                        if ($4 eq '') {
+                            $sec = 'none';
+                        } else {
+                            $sec = $4;
+                        }
+                        $allroles{$cid}{$1}{$sec} = $env{$envkey};
+                    }
+                }
+                if (keys(%allroles) == 0) {
+                    return;
+                }
+                foreach my $key (@courses_and_groups) {
+                    my %content = %{$$access_hash{$key}};
+                    my $cnum = $content{'number'};
+                    my $cdom = $content{'domain'};
+                    my $cid = $cdom.'_'.$cnum;
+                    if (!exists($allroles{$cid})) {
+                        next;
+                    }    
+                    foreach my $role_id (keys(%{$content{'roles'}})) {
+                        my @sections = @{$content{'roles'}{$role_id}{'section'}};
+                        my @groups = @{$content{'roles'}{$role_id}{'group'}};
+                        my @status = @{$content{'roles'}{$role_id}{'access'}};
+                        my @roles = @{$content{'roles'}{$role_id}{'role'}};
+                        foreach my $role (keys(%{$allroles{$cid}})) {
+                            if ((grep/^all$/,@roles) || (grep/^\Q$role\E$/,@roles)) {
+                                foreach my $sec (keys(%{$allroles{$cid}{$role}})) {
+                                    if (&course_group_datechecker($allroles{$cid}{$role}{$sec},$now,\@status) eq 'ok') {
+                                        if (grep/^all$/,@sections) {
+                                            return 'ok';
+                                        } else {
+                                            if (grep/^$sec$/,@sections) {
+                                                return 'ok';
+                                            }
+                                        }
+                                    }
+                                }
+                                if (keys(%{$allgroups{$cid}}) == 0) {
+                                    if (grep/^none$/,@groups) {
+                                        return 'ok';
+                                    }
+                                } else {
+                                    if (grep/^all$/,@groups) {
+                                        return 'ok';
+                                    } 
+                                    foreach my $group (keys(%{$allgroups{$cid}})) {
+                                        if (grep/^$group$/,@groups) {
+                                            return 'ok';
+                                        }
+                                    }
+                                } 
+                            }
+                        }
+                    }
+                }
+            }
+            if ($guest) {
+                return $guest;
+            }
+        }
+    }
+    return;
+}
+
+sub course_group_datechecker {
+    my ($dates,$now,$status) = @_;
+    my ($start,$end) = split(/\./,$dates);
+    if (!$start && !$end) {
+        return 'ok';
+    }
+    if (grep/^active$/,@{$status}) {
+        if (((!$start) || ($start && $start <= $now)) && ((!$end) || ($end && $end >= $now))) {
+            return 'ok';
+        }
+    }
+    if (grep/^previous$/,@{$status}) {
+        if ($end > $now ) {
+            return 'ok';
+        }
+    }
+    if (grep/^future$/,@{$status}) {
+        if ($start > $now) {
+            return 'ok';
+        }
+    }
+    return; 
+}
+
+sub parse_portfolio_url {
+    my ($url) = @_;
+
+    my ($type,$udom,$unum,$group,$file_name);
+    
+    if ($url =~  m-^/*(?:uploaded|editupload)/($match_domain)/($match_username)/portfolio(/.+)$-) {
+	$type = 1;
+        $udom = $1;
+        $unum = $2;
+        $file_name = $3;
+    } elsif ($url =~ m-^/*(?:uploaded|editupload)/($match_domain)/($match_courseid)/groups/([^/]+)/portfolio/(.+)$-) {
+	$type = 2;
+        $udom = $1;
+        $unum = $2;
+        $group = $3;
+        $file_name = $3.'/'.$4;
+    }
+    if (wantarray) {
+	return ($type,$udom,$unum,$file_name,$group);
+    }
+    return $type;
+}
+
+sub is_portfolio_url {
+    my ($url) = @_;
+    return scalar(&parse_portfolio_url($url));
+}
+
+sub is_portfolio_file {
+    my ($file) = @_;
+    if (($file =~ /^portfolio/) || ($file =~ /^groups\/\w+\/portfolio/)) {
+        return 1;
+    }
+    return;
+}
+
+
 # ---------------------------------------------- Custom access rule evaluation
 
 sub customaccess {
     my ($priv,$uri)=@_;
-    my ($urole,$urealm)=split(/\./,$env{'request.role'});
-    $urealm=~s/^\W//;
-    my ($udom,$ucrs,$usec)=split(/\//,$urealm);
+    my ($urole,$urealm)=split(/\./,$env{'request.role'},2);
+    my (undef,$udom,$ucrs,$usec)=split(/\//,$urealm);
+    $udom = &LONCAPA::clean_domain($udom);
+    $ucrs = &LONCAPA::clean_username($ucrs);
     my $access=0;
-    foreach (split(/\s*\,\s*/,&metadata($uri,'rule_rights'))) {
-	my ($effect,$realm,$role)=split(/\:/,$_);
+    foreach my $right (split(/\s*\,\s*/,&metadata($uri,'rule_rights'))) {
+	my ($effect,$realm,$role)=split(/\:/,$right);
         if ($role) {
 	   if ($role ne $urole) { next; }
         }
-        foreach (split(/\s*\,\s*/,$realm)) {
-            my ($tdom,$tcrs,$tsec)=split(/\_/,$_);
+        foreach my $scope (split(/\s*\,\s*/,$realm)) {
+            my ($tdom,$tcrs,$tsec)=split(/\_/,$scope);
             if ($tdom) {
 		if ($tdom ne $udom) { next; }
             }
@@ -3222,16 +3663,26 @@ sub customaccess {
 # ------------------------------------------------- Check for a user privilege
 
 sub allowed {
-    my ($priv,$uri,$symb)=@_;
+    my ($priv,$uri,$symb,$role)=@_;
     my $ver_orguri=$uri;
     $uri=&deversion($uri);
     my $orguri=$uri;
     $uri=&declutter($uri);
-    
+
+    if ($priv eq 'evb') {
+# Evade communication block restrictions for specified role in a course
+        if ($env{'user.priv.'.$role} =~/evb\&([^\:]*)/) {
+            return $1;
+        } else {
+            return;
+        }
+    }
+
     if (defined($env{'allowed.'.$priv})) { return $env{'allowed.'.$priv}; }
 # Free bre access to adm and meta resources
-    if (((($uri=~/^adm\//) && ($uri !~ m|/bulletinboard$|)) 
-	 || ($uri=~/\.meta$/)) && ($priv eq 'bre')) {
+    if (((($uri=~/^adm\//) && ($uri !~ m{/(?:smppg|bulletinboard)$})) 
+	 || (($uri=~/\.meta$/) && ($uri!~m|^uploaded/|) )) 
+	&& ($priv eq 'bre')) {
 	return 'F';
     }
 
@@ -3239,10 +3690,17 @@ sub allowed {
     my ($space,$domain,$name,@dir)=split('/',$uri);
     if (($space=~/^(uploaded|editupload)$/) && ($env{'user.name'} eq $name) && 
 	($env{'user.domain'} eq $domain) && ('portfolio' eq $dir[0])) {
-        return 'F';
+        my %setters;
+        my ($startblock,$endblock) = 
+            &Apache::loncommon::blockcheck(\%setters,'port');
+        if ($startblock && $endblock) {
+            return 'B';
+        } else {
+            return 'F';
+        }
     }
 
-# bre access to group if user has rgf priv for this group and course.
+# bre access to group portfolio for rgf priv in group, or mdg or vcg in course.
     if (($space=~/^(uploaded|editupload)$/) && ($dir[0] eq 'groups') 
          && ($dir[2] eq 'portfolio') && ($priv eq 'bre')) {
         if (exists($env{'request.course.id'})) {
@@ -3254,6 +3712,14 @@ sub allowed {
                 if ($env{'user.priv.'.$env{'request.role'}.'./'.$courseprivid
                     .'/'.$dir[1]} =~/rgf\&([^\:]*)/) {
                     return $1; 
+                } else {
+                    if ($env{'request.course.sec'}) {
+                        $courseprivid.='/'.$env{'request.course.sec'};
+                    }
+                    if ($env{'user.priv.'.$env{'request.role'}.'./'.
+                        $courseprivid} =~/(mdg|vcg)\&([^\:]*)/) {
+                        return $2;
+                    }
                 }
             }
         }
@@ -3322,14 +3788,6 @@ sub allowed {
        $thisallowed.=$1;
     }
 
-# Group: uri itself is a group
-    my $groupuri=$uri;
-    $groupuri=~s/^([^\/])/\/$1/;
-    if ($env{'user.priv.'.$env{'request.role'}.'.'.$groupuri}
-       =~/\Q$priv\E\&([^\:]*)/) {
-       $thisallowed.=$1;
-    }
-
 # URI is an uploaded document for this course, default permissions don't matter
 # not allowing 'edit' access (editupload) to uploaded course docs
     if (($priv eq 'bre') && ($uri=~m|^uploaded/|)) {
@@ -3356,6 +3814,13 @@ sub allowed {
         }
     }
 
+    if ($priv eq 'bre'
+	&& $thisallowed ne 'F' 
+	&& $thisallowed ne '2'
+	&& &is_portfolio_url($uri)) {
+	$thisallowed = &portfolio_access($uri);
+    }
+    
 # Full access at system, domain or course-wide level? Exit.
 
     if ($thisallowed=~/F/) {
@@ -3403,14 +3868,14 @@ sub allowed {
        if ($checkreferer) {
 	  my $refuri=$env{'httpref.'.$orguri};
             unless ($refuri) {
-                foreach (keys %env) {
-		    if ($_=~/^httpref\..*\*/) {
-			my $pattern=$_;
+                foreach my $key (keys(%env)) {
+		    if ($key=~/^httpref\..*\*/) {
+			my $pattern=$key;
                         $pattern=~s/^httpref\.\/res\///;
                         $pattern=~s/\*/\[\^\/\]\+/g;
                         $pattern=~s/\//\\\//g;
                         if ($orguri=~/$pattern/) {
-			    $refuri=$env{$_};
+			    $refuri=$env{$key};
                         }
                     }
                 }
@@ -3506,7 +3971,13 @@ sub allowed {
 #
 
     unless ($env{'request.course.id'}) {
-       return '1';
+	if ($thisallowed eq 'A') {
+	    return 'A';
+        } elsif ($thisallowed eq 'B') {
+            return 'B';
+	} else {
+	    return '1';
+	}
     }
 
 #
@@ -3569,6 +4040,11 @@ sub allowed {
       }
    }
 
+    if ($thisallowed eq 'A') {
+	return 'A';
+    } elsif ($thisallowed eq 'B') {
+        return 'B';
+    }
    return 'F';
 }
 
@@ -3621,8 +4097,8 @@ sub get_symb_from_alias {
 sub definerole {
   if (allowed('mcr','/')) {
     my ($rolename,$sysrole,$domrole,$courole)=@_;
-    foreach (split(':',$sysrole)) {
-	my ($crole,$cqual)=split(/\&/,$_);
+    foreach my $role (split(':',$sysrole)) {
+	my ($crole,$cqual)=split(/\&/,$role);
         if ($pr{'cr:s'}!~/\Q$crole\E/) { return "refused:s:$crole"; }
         if ($pr{'cr:s'}=~/\Q$crole\E\&/) {
 	    if ($pr{'cr:s'}!~/\Q$crole\E\&\w*\Q$cqual\E/) { 
@@ -3630,8 +4106,8 @@ sub definerole {
             }
         }
     }
-    foreach (split(':',$domrole)) {
-	my ($crole,$cqual)=split(/\&/,$_);
+    foreach my $role (split(':',$domrole)) {
+	my ($crole,$cqual)=split(/\&/,$role);
         if ($pr{'cr:d'}!~/\Q$crole\E/) { return "refused:d:$crole"; }
         if ($pr{'cr:d'}=~/\Q$crole\E\&/) {
 	    if ($pr{'cr:d'}!~/\Q$crole\W\&\w*\Q$cqual\E/) { 
@@ -3639,8 +4115,8 @@ sub definerole {
             }
         }
     }
-    foreach (split(':',$courole)) {
-	my ($crole,$cqual)=split(/\&/,$_);
+    foreach my $role (split(':',$courole)) {
+	my ($crole,$cqual)=split(/\&/,$role);
         if ($pr{'cr:c'}!~/\Q$crole\E/) { return "refused:c:$crole"; }
         if ($pr{'cr:c'}=~/\Q$crole\E\&/) {
 	    if ($pr{'cr:c'}!~/\Q$crole\E\&\w*\Q$cqual\E/) { 
@@ -3687,13 +4163,25 @@ sub log_query {
     my $uhome=&homeserver($uname,$udom);
     if ($uhome eq 'no_host') { return 'error: no_host'; }
     my $uhost=$hostname{$uhome};
-    my $command=&escape(join(':',map{$_.'='.$filters{$_}} keys %filters));
+    my $command=&escape(join(':',map{$_.'='.$filters{$_}} keys(%filters)));
     my $queryid=&reply("querysend:".$query.':'.$udom.':'.$uname.':'.$command,
                        $uhome);
     unless ($queryid=~/^\Q$uhost\E\_/) { return 'error: '.$queryid; }
     return get_query_reply($queryid);
 }
 
+# -------------------------- Update MySQL table for portfolio file
+
+sub update_portfolio_table {
+    my ($uname,$udom,$file_name,$query,$group,$action) = @_;
+    my $homeserver = &homeserver($uname,$udom);
+    my $queryid=
+        &reply("querysend:".$query.':'.&escape($uname.':'.$udom.':'.$group).
+               ':'.&escape($file_name).':'.$action,$homeserver);
+    my $reply = &get_query_reply($queryid);
+    return $reply;
+}
+
 # ------- Request retrieval of institutional classlists for course(s)
 
 sub fetch_enrollment_query {
@@ -3708,8 +4196,8 @@ sub fetch_enrollment_query {
     }
     my $host=$hostname{$homeserver};
     my $cmd = '';
-    foreach (keys %{$affiliatesref}) {
-        $cmd .= $_.'='.join(",",@{$$affiliatesref{$_}}).'%%';
+    foreach my $affiliate (keys %{$affiliatesref}) {
+        $cmd .= $affiliate.'='.join(",",@{$$affiliatesref{$affiliate}}).'%%';
     }
     $cmd =~ s/%%$//;
     $cmd = &escape($cmd);
@@ -3730,18 +4218,18 @@ sub fetch_enrollment_query {
     } else {
         my @responses = split/:/,$reply;
         if ($homeserver eq $perlvar{'lonHostID'}) {
-            foreach (@responses) {
-                my ($key,$value) = split/=/,$_;
+            foreach my $line (@responses) {
+                my ($key,$value) = split(/=/,$line,2);
                 $$replyref{$key} = $value;
             }
         } else {
             my $pathname = $perlvar{'lonDaemons'}.'/tmp';
-            foreach (@responses) {
-                my ($key,$value) = split/=/,$_;
+            foreach my $line (@responses) {
+                my ($key,$value) = split(/=/,$line);
                 $$replyref{$key} = $value;
                 if ($value > 0) {
-                    foreach (@{$$affiliatesref{$key}}) {
-                        my $filename = $dom.'_'.$key.'_'.$_.'_classlist.xml';
+                    foreach my $item (@{$$affiliatesref{$key}}) {
+                        my $filename = $dom.'_'.$key.'_'.$item.'_classlist.xml';
                         my $destname = $pathname.'/'.$filename;
                         my $xml_classlist = &reply("autoretrieve:".$filename,$homeserver);
                         if ($xml_classlist =~ /^error/) {
@@ -3815,7 +4303,7 @@ sub auto_run {
     my $response = &reply('autorun:'.$cdom,$homeserver);
     return $response;
 }
-                                                                                   
+
 sub auto_get_sections {
     my ($cnum,$cdom,$inst_coursecode) = @_;
     my $homeserver = &homeserver($cnum,$cdom);
@@ -3826,21 +4314,21 @@ sub auto_get_sections {
     }
     return @secs;
 }
-                                                                                   
+
 sub auto_new_course {
     my ($cnum,$cdom,$inst_course_id,$owner) = @_;
     my $homeserver = &homeserver($cnum,$cdom);
     my $response=&unescape(&reply('autonewcourse:'.$inst_course_id.':'.$owner.':'.$cdom,$homeserver));
     return $response;
 }
-                                                                                   
+
 sub auto_validate_courseID {
     my ($cnum,$cdom,$inst_course_id) = @_;
     my $homeserver = &homeserver($cnum,$cdom);
     my $response=&unescape(&reply('autovalidatecourse:'.$inst_course_id.':'.$cdom,$homeserver));
     return $response;
 }
-                                                                                   
+
 sub auto_create_password {
     my ($cnum,$cdom,$authparam) = @_;
     my $homeserver = &homeserver($cnum,$cdom); 
@@ -3900,8 +4388,8 @@ sub auto_photoupdate {
     my $host=$hostname{$homeserver};
     my $cmd = '';
     my $maxtries = 1;
-    foreach (keys %{$affiliatesref}) {
-        $cmd .= $_.'='.join(",",@{$$affiliatesref{$_}}).'%%';
+    foreach my $affiliate (keys(%{$affiliatesref})) {
+        $cmd .= $affiliate.'='.join(",",@{$$affiliatesref{$affiliate}}).'%%';
     }
     $cmd =~ s/%%$//;
     $cmd = &escape($cmd);
@@ -3932,43 +4420,94 @@ sub auto_photoupdate {
 }
 
 sub auto_instcode_format {
-    my ($caller,$codedom,$instcodes,$codes,$codetitles,$cat_titles,$cat_order) = @_;
+    my ($caller,$codedom,$instcodes,$codes,$codetitles,$cat_titles,
+	$cat_order) = @_;
     my $courses = '';
-    my $homeserver;
+    my @homeservers;
     if ($caller eq 'global') {
-        foreach my $tryserver (keys %libserv) {
+        foreach my $tryserver (keys(%libserv)) {
             if ($hostdom{$tryserver} eq $codedom) {
-                $homeserver = $tryserver;
-                last;
+                if (!grep(/^\Q$tryserver\E$/,@homeservers)) {
+                    push(@homeservers,$tryserver);
+                }
             }
         }
-        if (($env{'user.name'}) && ($env{'user.domain'} eq $codedom)) {
-            $homeserver = &homeserver($env{'user.name'},$codedom);
-        }
     } else {
-        $homeserver = &homeserver($caller,$codedom);
+        push(@homeservers,&homeserver($caller,$codedom));
     }
-    foreach (keys %{$instcodes}) {
-        $courses .= &escape($_).'='.&escape($$instcodes{$_}).'&';
+    foreach my $code (keys(%{$instcodes})) {
+        $courses .= &escape($code).'='.&escape($$instcodes{$code}).'&';
     }
     chop($courses);
-    my $response=&reply('autoinstcodeformat:'.$codedom.':'.$courses,$homeserver);
-    unless ($response =~ /(con_lost|error|no_such_host|refused)/) {
-        my ($codes_str,$codetitles_str,$cat_titles_str,$cat_order_str) = split/:/,$response;
-        %{$codes} = &str2hash($codes_str);
-        @{$codetitles} = &str2array($codetitles_str);
-        %{$cat_titles} = &str2hash($cat_titles_str);
-        %{$cat_order} = &str2hash($cat_order_str);
+    my $ok_response = 0;
+    my $response;
+    while (@homeservers > 0 && $ok_response == 0) {
+        my $server = shift(@homeservers); 
+        $response=&reply('autoinstcodeformat:'.$codedom.':'.$courses,$server);
+        if ($response !~ /(con_lost|error|no_such_host|refused)/) {
+            my ($codes_str,$codetitles_str,$cat_titles_str,$cat_order_str) = 
+		split/:/,$response;
+            %{$codes} = (%{$codes},&str2hash($codes_str));
+            push(@{$codetitles},&str2array($codetitles_str));
+            %{$cat_titles} = (%{$cat_titles},&str2hash($cat_titles_str));
+            %{$cat_order} = (%{$cat_order},&str2hash($cat_order_str));
+            $ok_response = 1;
+        }
+    }
+    if ($ok_response) {
         return 'ok';
+    } else {
+        return $response;
     }
+}
+
+sub auto_instcode_defaults {
+    my ($domain,$returnhash,$code_order) = @_;
+    my @homeservers;
+    foreach my $tryserver (keys(%libserv)) {
+        if ($hostdom{$tryserver} eq $domain) {
+            if (!grep(/^\Q$tryserver\E$/,@homeservers)) {
+                push(@homeservers,$tryserver);
+            }
+        }
+    }
+    my $ok_response = 0;
+    my $response;
+    while (@homeservers > 0 && $ok_response == 0) {
+        my $server = shift(@homeservers);
+        $response=&reply('autoinstcodedefaults:'.$domain,$server);
+        if ($response !~ /(con_lost|error|no_such_host|refused)/) {
+            foreach my $pair (split(/\&/,$response)) {
+                my ($name,$value)=split(/\=/,$pair);
+                if ($name eq 'code_order') {
+                    @{$code_order} = split(/\&/,&unescape($value));
+                } else {
+                    $returnhash->{&unescape($name)}=&unescape($value);
+                }
+            }
+            $ok_response = 1;
+        }
+    }
+    if ($ok_response) {
+        return 'ok';
+    } else {
+        return $response;
+    }
+} 
+
+sub auto_validate_class_sec {
+    my ($cdom,$cnum,$owner,$inst_class) = @_;
+    my $homeserver = &homeserver($cnum,$cdom);
+    my $response=&reply('autovalidateclass_sec:'.$inst_class.':'.
+                        &escape($owner).':'.$cdom,$homeserver);
     return $response;
 }
 
 # ------------------------------------------------------- Course Group routines
 
 sub get_coursegroups {
-    my ($cdom,$cnum,$group) = @_;
-    return(&dump('coursegroups',$cdom,$cnum,$group));
+    my ($cdom,$cnum,$group,$namespace) = @_;
+    return(&dump($namespace,$cdom,$cnum,$group));
 }
 
 sub modify_coursegroup {
@@ -3976,6 +4515,37 @@ sub modify_coursegroup {
     return(&put('coursegroups',$groupsettings,$cdom,$cnum));
 }
 
+sub toggle_coursegroup_status {
+    my ($cdom,$cnum,$group,$action) = @_;
+    my ($from_namespace,$to_namespace);
+    if ($action eq 'delete') {
+        $from_namespace = 'coursegroups';
+        $to_namespace = 'deleted_groups';
+    } else {
+        $from_namespace = 'deleted_groups';
+        $to_namespace = 'coursegroups';
+    }
+    my %curr_group = &get_coursegroups($cdom,$cnum,$group,$from_namespace);
+    if (my $tmp = &error(%curr_group)) {
+        &Apache::lonnet::logthis('Error retrieving group: '.$tmp.' in '.$cnum.':'.$cdom);
+        return ('read error',$tmp);
+    } else {
+        my %savedsettings = %curr_group; 
+        my $result = &put($to_namespace,\%savedsettings,$cdom,$cnum);
+        my $deloutcome;
+        if ($result eq 'ok') {
+            $deloutcome = &del($from_namespace,[$group],$cdom,$cnum);
+        } else {
+            return ('write error',$result);
+        }
+        if ($deloutcome eq 'ok') {
+            return 'ok';
+        } else {
+            return ('delete error',$deloutcome);
+        }
+    }
+}
+
 sub modify_group_roles {
     my ($cdom,$cnum,$group_id,$user,$end,$start,$userprivs) = @_;
     my $url = '/'.$cdom.'/'.$cnum.'/'.$group_id;
@@ -3999,7 +4569,7 @@ sub get_active_groups {
     my $now = time;
     my %groups = ();
     foreach my $key (keys(%env)) {
-        if ($key =~ m-user\.role\.gr\./([^/]+)/([^/]+)/(\w+)$-) {
+        if ($key =~ m-user\.role\.gr\./($match_domain)/($match_courseid)/(\w+)$-) {
             my ($start,$end) = split(/\./,$env{$key});
             if (($end!=0) && ($end<$now)) { next; }
             if (($start!=0) && ($start>$now)) { next; }
@@ -4020,8 +4590,6 @@ sub get_users_groups {
     my ($udom,$uname,$courseid) = @_;
     my @usersgroups;
     my $cachetime=1800;
-    $courseid=~s/\_/\//g;
-    $courseid=~s/^(\w)/\/$1/;
 
     my $hashid="$udom:$uname:$courseid";
     my ($grouplist,$cached)=&is_cached_new('getgroups',$hashid);
@@ -4029,38 +4597,34 @@ sub get_users_groups {
         @usersgroups = split(/:/,$grouplist);
     } else {  
         $grouplist = '';
-        my %roleshash = &dump('roles',$udom,$uname,$courseid);
-        my ($tmp) = keys(%roleshash);
-        if ($tmp=~/^error:/) {
-            &logthis('Error retrieving roles: '.$tmp.' for '.$uname.':'.$udom);
-        } else {
-            my $access_end = $env{'course.'.$courseid.
-                                  '.default_enrollment_end_date'};
-            my $now = time;
-            foreach my $key (keys(%roleshash)) {
-                if ($key =~ /^\Q$courseid\E\/(\w+)\_gr$/) {
-                    my $group = $1;
-                    if ($roleshash{$key} =~ /_(\d+)_(\d+)$/) {
-                        my $start = $2;
-                        my $end = $1;
-                        if ($start == -1) { next; } # deleted from group
-                        if (($start!=0) && ($start>$now)) { next; }
-                        if (($end!=0) && ($end<$now)) {
-                            if ($access_end && $access_end < $now) {
-                                if ($access_end - $end < 86400) {
-                                    push(@usersgroups,$group);
-                                }
+        my $courseurl = &courseid_to_courseurl($courseid);
+        my %roleshash = &dump('roles',$udom,$uname,$courseurl);
+        my $access_end = $env{'course.'.$courseid.
+                              '.default_enrollment_end_date'};
+        my $now = time;
+        foreach my $key (keys(%roleshash)) {
+            if ($key =~ /^\Q$courseurl\E\/(\w+)\_gr$/) {
+                my $group = $1;
+                if ($roleshash{$key} =~ /_(\d+)_(\d+)$/) {
+                    my $start = $2;
+                    my $end = $1;
+                    if ($start == -1) { next; } # deleted from group
+                    if (($start!=0) && ($start>$now)) { next; }
+                    if (($end!=0) && ($end<$now)) {
+                        if ($access_end && $access_end < $now) {
+                            if ($access_end - $end < 86400) {
+                                push(@usersgroups,$group);
                             }
-                            next;
                         }
-                        push(@usersgroups,$group);
+                        next;
                     }
+                    push(@usersgroups,$group);
                 }
             }
-            @usersgroups = &sort_course_groups($courseid,@usersgroups);
-            $grouplist = join(':',@usersgroups);
-            &do_cache_new('getgroups',$hashid,$grouplist,$cachetime);
         }
+        @usersgroups = &sort_course_groups($courseid,@usersgroups);
+        $grouplist = join(':',@usersgroups);
+        &do_cache_new('getgroups',$hashid,$grouplist,$cachetime);
     }
     return @usersgroups;
 }
@@ -4068,8 +4632,7 @@ sub get_users_groups {
 sub devalidate_getgroups_cache {
     my ($udom,$uname,$cdom,$cnum)=@_;
     my $courseid = $cdom.'_'.$cnum;
-    $courseid=~s/\_/\//g;
-    $courseid=~s/^(\w)/\/$1/;
+
     my $hashid="$udom:$uname:$courseid";
     &devalidate_cache_new('getgroups',$hashid);
 }
@@ -4077,8 +4640,28 @@ sub devalidate_getgroups_cache {
 # ------------------------------------------------------------------ Plain Text
 
 sub plaintext {
-    my $short=shift;
-    return &Apache::lonlocal::mt($prp{$short});
+    my ($short,$type,$cid) = @_;
+    if ($short =~ /^cr/) {
+	return (split('/',$short))[-1];
+    }
+    if (!defined($cid)) {
+        $cid = $env{'request.course.id'};
+    }
+    if (defined($cid) && defined($env{'course.'.$cid.'.'.$short.'.plaintext'})) {
+        return &Apache::lonlocal::mt($env{'course.'.$cid.'.'.$short.
+                                          '.plaintext'});
+    }
+    my %rolenames = (
+                      Course => 'std',
+                      Group => 'alt1',
+                    );
+    if (defined($type) && 
+         defined($rolenames{$type}) && 
+         defined($prp{$short}{$rolenames{$type}})) {
+        return &Apache::lonlocal::mt($prp{$short}{$rolenames{$type}});
+    } else {
+        return &Apache::lonlocal::mt($prp{$short}{'std'});
+    }
 }
 
 # ----------------------------------------------------------------- Assign Role
@@ -4088,7 +4671,7 @@ sub assignrole {
     my $mrole;
     if ($role =~ /^cr\//) {
         my $cwosec=$url;
-        $cwosec=~s/^\/(\w+)\/(\w+)\/.*/$1\/$2/;
+        $cwosec=~s/^\/($match_domain)\/($match_courseid)\/.*/$1\/$2/;
 	unless (&allowed('ccr',$cwosec)) {
            &logthis('Refused custom assignrole: '.
              $udom.' '.$uname.' '.$url.' '.$role.' '.$end.' '.$start.' by '.
@@ -4098,7 +4681,7 @@ sub assignrole {
         $mrole='cr';
     } elsif ($role =~ /^gr\//) {
         my $cwogrp=$url;
-        $cwogrp=~s/^\/(\w+)\/(\w+)\/.*/$1\/$2/;
+        $cwogrp=~s{^/($match_domain)/($match_courseid)/.*}{$1/$2};
         unless (&allowed('mdg',$cwogrp)) {
             &logthis('Refused group assignrole: '.
               $udom.' '.$uname.' '.$url.' '.$role.' '.$end.' '.$start.' by '.
@@ -4108,7 +4691,7 @@ sub assignrole {
         $mrole='gr';
     } else {
         my $cwosec=$url;
-        $cwosec=~s/^\/(\w+)\/(\w+)\/.*/$1\/$2/;
+        $cwosec=~s/^\/($match_domain)\/($match_courseid)\/.*/$1\/$2/;
         unless ((&allowed('c'.$role,$cwosec)) || &allowed('c'.$role,$udom)) { 
            &logthis('Refused assignrole: '.
              $udom.' '.$uname.' '.$url.' '.$role.' '.$end.' '.$start.' by '.
@@ -4188,8 +4771,8 @@ sub modifyuser {
         $umode,   $upass, $first,
         $middle,  $last,  $gene,
         $forceid, $desiredhome, $email)=@_;
-    $udom=~s/\W//g;
-    $uname=~s/\W//g;
+    $udom= &LONCAPA::clean_domain($udom);
+    $uname=&LONCAPA::clean_username($uname);
     &logthis('Call to modify user '.$udom.', '.$uname.', '.$uid.', '.
              $umode.', '.$first.', '.$middle.', '.
 	     $last.', '.$gene.'(forceid: '.$forceid.')'.
@@ -4338,8 +4921,8 @@ sub modify_student_enrollment {
                        ['firstname','middlename','lastname', 'generation','id']
                        ,$udom,$uname);
 
-        #foreach (keys(%tmp)) {
-        #    &logthis("key $_ = ".$tmp{$_});
+        #foreach my $key (keys(%tmp)) {
+        #    &logthis("key $key = ".$tmp{$key});
         #}
         $first  = $tmp{'firstname'}  if (!defined($first)  || $first  eq '');
         $middle = $tmp{'middlename'} if (!defined($middle) || $middle eq '');
@@ -4397,8 +4980,8 @@ sub writecoursepref {
 	return 'error: no such course';
     }
     my $cstring='';
-    foreach (keys %prefs) {
-	$cstring.=escape($_).'='.escape($prefs{$_}).'&';
+    foreach my $pref (keys(%prefs)) {
+	$cstring.=&escape($pref).'='.&escape($prefs{$pref}).'&';
     }
     $cstring=~s/\&$//;
     return reply('put:'.$cdomain.':'.$cnum.':environment:'.$cstring,$chome);
@@ -4407,7 +4990,8 @@ sub writecoursepref {
 # ---------------------------------------------------------- Make/modify course
 
 sub createcourse {
-    my ($udom,$description,$url,$course_server,$nonstandard,$inst_code,$course_owner)=@_;
+    my ($udom,$description,$url,$course_server,$nonstandard,$inst_code,
+        $course_owner,$crstype)=@_;
     $url=&declutter($url);
     my $cid='';
     unless (&allowed('ccc',$udom)) {
@@ -4444,7 +5028,8 @@ sub createcourse {
 # ----------------------------------------------------------------- Course made
 # log existence
     &courseidput($udom,&escape($udom.'_'.$uname).'='.&escape($description).
-                 ':'.&escape($inst_code).':'.&escape($course_owner),$uhome);
+                 ':'.&escape($inst_code).':'.&escape($course_owner).':'.
+                  &escape($crstype),$uhome);
     &flushcourselogs();
 # set toplevel url
     my $topurl=$url;
@@ -4472,6 +5057,16 @@ ENDINITMAP
     return '/'.$udom.'/'.$uname;
 }
 
+sub is_course {
+    my ($cdom,$cnum) = @_;
+    my %courses = &courseiddump($cdom,'.',1,'.','.',$cnum,undef,
+				undef,'.');
+    if (exists($courses{$cdom.'_'.$cnum})) {
+        return 1;
+    }
+    return 0;
+}
+
 # ---------------------------------------------------------- Assign Custom Role
 
 sub assigncustomrole {
@@ -4514,14 +5109,28 @@ sub is_locked {
 		      $env{'user.domain'},$env{'user.name'});
     my ($tmp)=keys(%locked);
     if ($tmp=~/^error:/) { undef(%locked); }
-
+    
     if (ref($locked{$file_name}) eq 'ARRAY') {
-        $is_locked = 'true';
+        $is_locked = 'false';
+        foreach my $entry (@{$locked{$file_name}}) {
+           if (ref($entry) eq 'ARRAY') { 
+               $is_locked = 'true';
+               last;
+           }
+       }
     } else {
         $is_locked = 'false';
     }
 }
 
+sub declutter_portfile {
+    my ($file) = @_;
+    &logthis("got $file");
+    $file =~ s-^(/portfolio/|portfolio/)-/-;
+    &logthis("ret $file");
+    return $file;
+}
+
 # ------------------------------------------------------------- Mark as Read Only
 
 sub mark_as_readonly {
@@ -4530,6 +5139,7 @@ sub mark_as_readonly {
     my ($tmp)=keys(%current_permissions);
     if ($tmp=~/^error:/) { undef(%current_permissions); }
     foreach my $file (@{$files}) {
+	$file = &declutter_portfile($file);
         push(@{$current_permissions{$file}},$what);
     }
     &put('file_permissions',\%current_permissions,$domain,$user);
@@ -4588,66 +5198,226 @@ sub files_not_in_path {
     my $filename = $user."savedfiles";
     my @return_files;
     my $path_part;
-    open (IN, '<'.$Apache::lonnet::perlvar{'lonDaemons'}.'/tmp/'.$filename);
-    while (<IN>) {
+    open(IN, '<'.$Apache::lonnet::perlvar{'lonDaemons'}.'/tmp/'.$filename);
+    while (my $line = <IN>) {
         #ok, I know it's clunky, but I want it to work
-        my @paths_and_file = split m!/!, $_;
-        my $file_part = pop (@paths_and_file);
-        chomp ($file_part);
-        my $path_part = join ('/', @paths_and_file);
+        my @paths_and_file = split(m|/|, $line);
+        my $file_part = pop(@paths_and_file);
+        chomp($file_part);
+        my $path_part = join('/', @paths_and_file);
         $path_part .= '/';
         my $path_and_file = $path_part.$file_part;
         if ($path_part ne $path) {
-            push (@return_files, ($path_and_file));
+            push(@return_files, ($path_and_file));
         }
     }
-    close (OUT);
+    close(OUT);
     return (@return_files);
 }
 
-#--------------------------------------------------------------Get Marked as Read Only
+#----------------------------------------------Get portfolio file permissions
 
-
-sub get_marked_as_readonly {
-    my ($domain,$user,$what) = @_;
+sub get_portfile_permissions {
+    my ($domain,$user) = @_;
     my %current_permissions = &dump('file_permissions',$domain,$user);
     my ($tmp)=keys(%current_permissions);
     if ($tmp=~/^error:/) { undef(%current_permissions); }
+    return \%current_permissions;
+}
+
+#---------------------------------------------Get portfolio file access controls
+
+sub get_access_controls {
+    my ($current_permissions,$group,$file) = @_;
+    my %access;
+    my $real_file = $file;
+    $file =~ s/\.meta$//;
+    if (defined($file)) {
+        if (ref($$current_permissions{$file."\0".'accesscontrol'}) eq 'HASH') {
+            foreach my $control (keys(%{$$current_permissions{$file."\0".'accesscontrol'}})) {
+                $access{$real_file}{$control} = $$current_permissions{$file."\0".$control};
+            }
+        }
+    } else {
+        foreach my $key (keys(%{$current_permissions})) {
+            if ($key =~ /\0accesscontrol$/) {
+                if (defined($group)) {
+                    if ($key !~ m-^\Q$group\E/-) {
+                        next;
+                    }
+                }
+                my ($fullpath) = split(/\0/,$key);
+                if (ref($$current_permissions{$key}) eq 'HASH') {
+                    foreach my $control (keys(%{$$current_permissions{$key}})) {
+                        $access{$fullpath}{$control}=$$current_permissions{$fullpath."\0".$control};
+                    }
+                }
+            }
+        }
+    }
+    return %access;
+}
+
+sub modify_access_controls {
+    my ($file_name,$changes,$domain,$user)=@_;
+    my ($outcome,$deloutcome);
+    my %store_permissions;
+    my %new_values;
+    my %new_control;
+    my %translation;
+    my @deletions = ();
+    my $now = time;
+    if (exists($$changes{'activate'})) {
+        if (ref($$changes{'activate'}) eq 'HASH') {
+            my @newitems = sort(keys(%{$$changes{'activate'}}));
+            my $numnew = scalar(@newitems);
+            for (my $i=0; $i<$numnew; $i++) {
+                my $newkey = $newitems[$i];
+                my $newid = &Apache::loncommon::get_cgi_id();
+                if ($newkey =~ /^\d+:/) { 
+                    $newkey =~ s/^(\d+)/$newid/;
+                    $translation{$1} = $newid;
+                } elsif ($newkey =~ /^\d+_\d+_\d+:/) {
+                    $newkey =~ s/^(\d+_\d+_\d+)/$newid/;
+                    $translation{$1} = $newid;
+                }
+                $new_values{$file_name."\0".$newkey} = 
+                                          $$changes{'activate'}{$newitems[$i]};
+                $new_control{$newkey} = $now;
+            }
+        }
+    }
+    my %todelete;
+    my %changed_items;
+    foreach my $action ('delete','update') {
+        if (exists($$changes{$action})) {
+            if (ref($$changes{$action}) eq 'HASH') {
+                foreach my $key (keys(%{$$changes{$action}})) {
+                    my ($itemnum) = ($key =~ /^([^:]+):/);
+                    if ($action eq 'delete') { 
+                        $todelete{$itemnum} = 1;
+                    } else {
+                        $changed_items{$itemnum} = $key;
+                    }
+                }
+            }
+        }
+    }
+    # get lock on access controls for file.
+    my $lockhash = {
+                  $file_name."\0".'locked_access_records' => $env{'user.name'}.
+                                                       ':'.$env{'user.domain'},
+                   }; 
+    my $tries = 0;
+    my $gotlock = &newput('file_permissions',$lockhash,$domain,$user);
+   
+    while (($gotlock ne 'ok') && $tries <3) {
+        $tries ++;
+        sleep 1;
+        $gotlock = &newput('file_permissions',$lockhash,$domain,$user);
+    }
+    if ($gotlock eq 'ok') {
+        my %curr_permissions = &dump('file_permissions',$domain,$user,$file_name);
+        my ($tmp)=keys(%curr_permissions);
+        if ($tmp=~/^error:/) { undef(%curr_permissions); }
+        if (exists($curr_permissions{$file_name."\0".'accesscontrol'})) {
+            my $curr_controls = $curr_permissions{$file_name."\0".'accesscontrol'};
+            if (ref($curr_controls) eq 'HASH') {
+                foreach my $control_item (keys(%{$curr_controls})) {
+                    my ($itemnum) = ($control_item =~ /^([^:]+):/);
+                    if (defined($todelete{$itemnum})) {
+                        push(@deletions,$file_name."\0".$control_item);
+                    } else {
+                        if (defined($changed_items{$itemnum})) {
+                            $new_control{$changed_items{$itemnum}} = $now;
+                            push(@deletions,$file_name."\0".$control_item);
+                            $new_values{$file_name."\0".$changed_items{$itemnum}} = $$changes{'update'}{$changed_items{$itemnum}};
+                        } else {
+                            $new_control{$control_item} = $$curr_controls{$control_item};
+                        }
+                    }
+                }
+            }
+        }
+        $deloutcome = &del('file_permissions',\@deletions,$domain,$user);
+        $new_values{$file_name."\0".'accesscontrol'} = \%new_control;
+        $outcome = &put('file_permissions',\%new_values,$domain,$user);
+        #  remove lock
+        my @del_lock = ($file_name."\0".'locked_access_records');
+        my $dellockoutcome = &del('file_permissions',\@del_lock,$domain,$user);
+        my ($file,$group);
+        if (&is_course($domain,$user)) {
+            ($group,$file) = split(/\//,$file_name,2);
+        } else {
+            $file = $file_name;
+        }
+        my $sqlresult =
+            &update_portfolio_table($user,$domain,$file,'portfolio_access',
+                                    $group);
+    } else {
+        $outcome = "error: could not obtain lockfile\n";  
+    }
+    return ($outcome,$deloutcome,\%new_values,\%translation);
+}
+
+#------------------------------------------------------Get Marked as Read Only
+
+sub get_marked_as_readonly {
+    my ($domain,$user,$what,$group) = @_;
+    my $current_permissions = &get_portfile_permissions($domain,$user);
     my @readonly_files;
     my $cmp1=$what;
     if (ref($what)) { $cmp1=join('',@{$what}) };
-    while (my ($file_name,$value) = each(%current_permissions)) {
+    while (my ($file_name,$value) = each(%{$current_permissions})) {
+        if (defined($group)) {
+            if ($file_name !~ m-^\Q$group\E/-) {
+                next;
+            }
+        }
         if (ref($value) eq "ARRAY"){
             foreach my $stored_what (@{$value}) {
                 my $cmp2=$stored_what;
-                if (ref($stored_what)) { $cmp2=join('',@{$stored_what}) };
+                if (ref($stored_what) eq 'ARRAY') {
+                    $cmp2=join('',@{$stored_what});
+                }
                 if ($cmp1 eq $cmp2) {
                     push(@readonly_files, $file_name);
+                    last;
                 } elsif (!defined($what)) {
                     push(@readonly_files, $file_name);
+                    last;
                 }
             }
-        } 
+        }
     }
     return @readonly_files;
 }
 #-----------------------------------------------------------Get Marked as Read Only Hash
 
 sub get_marked_as_readonly_hash {
-    my ($domain,$user,$what) = @_;
-    my %current_permissions = &dump('file_permissions',$domain,$user);
-    my ($tmp)=keys(%current_permissions);
-    if ($tmp=~/^error:/) { undef(%current_permissions); }
-
+    my ($current_permissions,$group,$what) = @_;
     my %readonly_files;
-    while (my ($file_name,$value) = each(%current_permissions)) {
+    while (my ($file_name,$value) = each(%{$current_permissions})) {
+        if (defined($group)) {
+            if ($file_name !~ m-^\Q$group\E/-) {
+                next;
+            }
+        }
         if (ref($value) eq "ARRAY"){
             foreach my $stored_what (@{$value}) {
-                if ($stored_what eq $what) {
-                    $readonly_files{$file_name} = 'locked';
-                } elsif (!defined($what)) {
-                    $readonly_files{$file_name} = 'locked';
-                }
+                if (ref($stored_what) eq 'ARRAY') {
+                    foreach my $lock_descriptor(@{$stored_what}) {
+                        if ($lock_descriptor eq 'graded') {
+                            $readonly_files{$file_name} = 'graded';
+                        } elsif ($lock_descriptor eq 'handback') {
+                            $readonly_files{$file_name} = 'handback';
+                        } else {
+                            if (!exists($readonly_files{$file_name})) {
+                                $readonly_files{$file_name} = 'locked';
+                            }
+                        }
+                    }
+                } 
             }
         } 
     }
@@ -4658,24 +5428,28 @@ sub get_marked_as_readonly_hash {
 sub unmark_as_readonly {
     # unmarks $file_name (if $file_name is defined), or all files locked by $what 
     # for portfolio submissions, $what contains [$symb,$crsid] 
-    my ($domain,$user,$what,$file_name) = @_;
+    my ($domain,$user,$what,$file_name,$group) = @_;
+    $file_name = &declutter_portfile($file_name);
     my $symb_crs = $what;
     if (ref($what)) { $symb_crs=join('',@$what); }
-    my %current_permissions = &dump('file_permissions',$domain,$user);
+    my %current_permissions = &dump('file_permissions',$domain,$user,$group);
     my ($tmp)=keys(%current_permissions);
     if ($tmp=~/^error:/) { undef(%current_permissions); }
-    my @readonly_files = &get_marked_as_readonly($domain,$user,$what);
+    my @readonly_files = &get_marked_as_readonly($domain,$user,$what,$group);
     foreach my $file (@readonly_files) {
-	if (defined($file_name) && ($file_name ne $file)) { next; }
+	my $clean_file = &declutter_portfile($file);
+	if (defined($file_name) && ($file_name ne $clean_file)) { next; }
 	my $current_locks = $current_permissions{$file};
         my @new_locks;
         my @del_keys;
         if (ref($current_locks) eq "ARRAY"){
             foreach my $locker (@{$current_locks}) {
                 my $compare=$locker;
-                if (ref($locker)) { $compare=join('',@{$locker}) };
-                if ($compare ne $symb_crs) {
-                    push(@new_locks, $locker);
+                if (ref($locker) eq 'ARRAY') {
+                    $compare=join('',@{$locker});
+                    if ($compare ne $symb_crs) {
+                        push(@new_locks, $locker);
+                    }
                 }
             }
             if (scalar(@new_locks) > 0) {
@@ -4715,28 +5489,27 @@ sub dirlist {
 
     if($udom) {
         if($uname) {
-            my $listing=reply('ls2:'.$dirRoot.'/'.$uri,
-                              homeserver($uname,$udom));
+            my $listing = &reply('ls2:'.$dirRoot.'/'.$uri,
+				 &homeserver($uname,$udom));
             my @listing_results;
             if ($listing eq 'unknown_cmd') {
-                $listing=reply('ls:'.$dirRoot.'/'.$uri,
-                               homeserver($uname,$udom));
+                $listing = &reply('ls:'.$dirRoot.'/'.$uri,
+				  &homeserver($uname,$udom));
                 @listing_results = split(/:/,$listing);
             } else {
                 @listing_results = map { &unescape($_); } split(/:/,$listing);
             }
             return @listing_results;
         } elsif(!defined($alternateDirectoryRoot)) {
-            my $tryserver;
-            my %allusers=();
-            foreach $tryserver (keys %libserv) {
+            my %allusers;
+            foreach my $tryserver (keys(%libserv)) {
                 if($hostdom{$tryserver} eq $udom) {
-                    my $listing=reply('ls2:'.$perlvar{'lonDocRoot'}.'/res/'.
-                                      $udom, $tryserver);
+                    my $listing = &reply('ls2:'.$perlvar{'lonDocRoot'}.'/res/'.
+					 $udom, $tryserver);
                     my @listing_results;
                     if ($listing eq 'unknown_cmd') {
-                        $listing=reply('ls:'.$perlvar{'lonDocRoot'}.'/res/'.
-                                       $udom, $tryserver);
+                        $listing = &reply('ls:'.$perlvar{'lonDocRoot'}.'/res/'.
+					  $udom, $tryserver);
                         @listing_results = split(/:/,$listing);
                     } else {
                         @listing_results =
@@ -4745,40 +5518,36 @@ sub dirlist {
                     if ($listing_results[0] ne 'no_such_dir' && 
                         $listing_results[0] ne 'empty'       &&
                         $listing_results[0] ne 'con_lost') {
-                        foreach (@listing_results) {
-                            my ($entry,@stat)=split(/&/,$_);
-                            $allusers{$entry}=1;
+                        foreach my $line (@listing_results) {
+                            my ($entry) = split(/&/,$line,2);
+                            $allusers{$entry} = 1;
                         }
                     }
                 }
             }
             my $alluserstr='';
-            foreach (sort keys %allusers) {
-                $alluserstr.=$_.'&user:';
+            foreach my $user (sort(keys(%allusers))) {
+                $alluserstr.=$user.'&user:';
             }
             $alluserstr=~s/:$//;
             return split(/:/,$alluserstr);
         } else {
-            my @emptyResults = ();
-            push(@emptyResults, 'missing user name');
-            return split(':',@emptyResults);
+            return ('missing user name');
         }
     } elsif(!defined($alternateDirectoryRoot)) {
         my $tryserver;
         my %alldom=();
-        foreach $tryserver (keys %libserv) {
+        foreach $tryserver (keys(%libserv)) {
             $alldom{$hostdom{$tryserver}}=1;
         }
         my $alldomstr='';
-        foreach (sort keys %alldom) {
-            $alldomstr.=$perlvar{'lonDocRoot'}.'/res/'.$_.'/&domain:';
+        foreach my $domain (sort(keys(%alldom))) {
+            $alldomstr.=$perlvar{'lonDocRoot'}.'/res/'.$domain.'/&domain:';
         }
         $alldomstr=~s/:$//;
         return split(/:/,$alldomstr);       
     } else {
-        my @emptyResults = ();
-        push(@emptyResults, 'missing domain');
-        return split(':',@emptyResults);
+        return ('missing domain');
     }
 }
 
@@ -4796,8 +5565,8 @@ sub dirlist {
 ##
 sub GetFileTimestamp {
     my ($studentDomain,$studentName,$filename,$root)=@_;
-    $studentDomain=~s/\W//g;
-    $studentName=~s/\W//g;
+    $studentDomain = &LONCAPA::clean_domain($studentDomain);
+    $studentName   = &LONCAPA::clean_username($studentName);
     my $subdir=$studentName.'__';
     $subdir =~ s/(.)(.)(.).*/$1\/$2\/$3/;
     my $proname="$studentDomain/$subdir/$studentName";
@@ -4815,23 +5584,18 @@ sub GetFileTimestamp {
 
 sub stat_file {
     my ($uri) = @_;
-    $uri = &clutter($uri);
+    $uri = &clutter_with_no_wrapper($uri);
 
-    # we want just the url part without the unneeded accessor url bits
-    if ($uri =~ m-^/adm/-) {
-	$uri=~s-^/adm/wrapper/-/-;
-	$uri=~s-^/adm/coursedocs/showdoc/-/-;
-    }
     my ($udom,$uname,$file,$dir);
     if ($uri =~ m-^/(uploaded|editupload)/-) {
 	($udom,$uname,$file) =
-	    ($uri =~ m-/(?:uploaded|editupload)/?([^/]*)/?([^/]*)/?(.*)-);
+	    ($uri =~ m-/(?:uploaded|editupload)/?($match_domain)/?($match_name)/?(.*)-);
 	$file = 'userfiles/'.$file;
 	$dir = &propath($udom,$uname);
     }
     if ($uri =~ m-^/res/-) {
 	($udom,$uname) = 
-	    ($uri =~ m-/(?:res)/?([^/]*)/?([^/]*)/-);
+	    ($uri =~ m-/(?:res)/?($match_domain)/?($match_username)/-);
 	$file = $uri;
     }
 
@@ -4938,6 +5702,7 @@ sub devalidatecourseresdata {
     &devalidate_cache_new('courseres',$hashid);
 }
 
+
 # --------------------------------------------------- Course Resourcedata Query
 
 sub get_courseresdata {
@@ -5052,8 +5817,7 @@ sub EXT {
 	$symbparm=&get_symb_from_alias($symbparm);
     }
     if (!($uname && $udom)) {
-      (my $cursymb,$courseid,$udom,$uname,$publicuser)=
-	  &Apache::lonxml::whichuser($symbparm);
+      (my $cursymb,$courseid,$udom,$uname,$publicuser)= &whichuser($symbparm);
       if (!$symbparm) {	$symbparm=$cursymb; }
     } else {
 	$courseid=$env{'request.course.id'};
@@ -5076,8 +5840,14 @@ sub EXT {
 	    if ( (defined($Apache::lonhomework::parsing_a_problem)
 		  || defined($Apache::lonhomework::parsing_a_task))
 		 &&
-		 ($symbparm eq &symbread()) ) {
-		return $Apache::lonhomework::history{$qualifierrest};
+		 ($symbparm eq &symbread()) ) {	
+		# if we are in the middle of processing the resource the
+		# get the value we are planning on committing
+                if (defined($Apache::lonhomework::results{$qualifierrest})) {
+                    return $Apache::lonhomework::results{$qualifierrest};
+                } else {
+                    return $Apache::lonhomework::history{$qualifierrest};
+                }
 	    } else {
 		my %restored;
 		if ($publicuser || $env{'request.state'} eq 'construct') {
@@ -5284,6 +6054,9 @@ sub EXT {
 	if (($uname eq $env{'user.name'})&&($udom eq $env{'user.domain'})) {
 	    return $env{'environment.'.$spacequalifierrest};
 	} else {
+	    if ($uname eq 'anonymous' && $udom eq '') {
+		return '';
+	    }
 	    my %returnhash=&userenvironment($udom,$uname,
 					    $spacequalifierrest);
 	    return $returnhash{$spacequalifierrest};
@@ -5403,7 +6176,7 @@ sub metadata {
 	(($uri =~ m|^/*adm/|) && 
 	     ($uri !~ m|^adm/includes|) && ($uri !~ m|/bulletinboard$|)) ||
         ($uri =~ m|/$|) || ($uri =~ m|/.meta$|) || ($uri =~ /^~/) ||
-	($uri =~ m|home/[^/]+/public_html/|)) {
+	($uri =~ m|home/$match_username/public_html/|)) {
 	return undef;
     }
     my $filename=$uri;
@@ -5434,7 +6207,7 @@ sub metadata {
         my %metathesekeys=();
         unless ($filename=~/\.meta$/) { $filename.='.meta'; }
 	my $metastring;
-	if ($uri !~ m -^(uploaded|editupload)/-) {
+	if ($uri !~ m -^(editupload)/-) {
 	    my $file=&filelocation('',&clutter($filename));
 	    #push(@{$metaentry{$uri.'.file'}},$file);
 	    $metastring=&getfile($file);
@@ -5653,6 +6426,17 @@ sub metadata_generate_part0 {
     }
 }
 
+# ------------------------------------------------------ Devalidate title cache
+
+sub devalidate_title_cache {
+    my ($url)=@_;
+    if (!$env{'request.course.id'}) { return; }
+    my $symb=&symbread($url);
+    if (!$symb) { return; }
+    my $key=$env{'request.course.id'}."\0".$symb;
+    &devalidate_cache_new('title',$key);
+}
+
 # ------------------------------------------------- Get the title of a resource
 
 sub gettitle {
@@ -5687,7 +6471,7 @@ sub gettitle {
 sub get_slot {
     my ($which,$cnum,$cdom)=@_;
     if (!$cnum || !$cdom) {
-	(undef,my $courseid)=&Apache::lonxml::whichuser();
+	(undef,my $courseid)=&whichuser();
 	$cdom=$env{'course.'.$courseid.'.domain'};
 	$cnum=$env{'course.'.$courseid.'.num'};
     }
@@ -5736,9 +6520,6 @@ sub symblist {
 sub symbverify {
     my ($symb,$thisurl)=@_;
     my $thisfn=$thisurl;
-# wrapper not part of symbs
-    $thisfn=~s/^\/adm\/wrapper//;
-    $thisfn=~s/^\/adm\/coursedocs\/showdoc\///;
     $thisfn=&declutter($thisfn);
 # direct jump to resource in page or to a sequence - will construct own symbs
     if ($thisfn=~/\.(page|sequence)$/) { return 1; }
@@ -5762,13 +6543,13 @@ sub symbverify {
         }
         if ($ids) {
 # ------------------------------------------------------------------- Has ID(s)
-	    foreach (split(/\,/,$ids)) {
-	       my ($mapid,$resid)=split(/\./,$_);
+	    foreach my $id (split(/\,/,$ids)) {
+	       my ($mapid,$resid)=split(/\./,$id);
                if (
   &symbclean(&declutter($bighash{'map_id_'.$mapid}).'___'.$resid.'___'.$thisfn)
    eq $symb) { 
 		   if (($env{'request.role.adv'}) ||
-		       $bighash{'encrypted_'.$_} eq $env{'request.enc'}) {
+		       $bighash{'encrypted_'.$id} eq $env{'request.enc'}) {
 		       $okay=1; 
 		   }
 	       }
@@ -5911,10 +6692,10 @@ sub symbread {
                  } elsif (!$donotrecurse) {
 # ------------------------------------------ There is more than one possibility
                      my $realpossible=0;
-                     foreach (@possibilities) {
-			 my $file=$bighash{'src_'.$_};
+                     foreach my $id (@possibilities) {
+			 my $file=$bighash{'src_'.$id};
                          if (&allowed('bre',$file)) {
-         		    my ($mapid,$resid)=split(/\./,$_);
+         		    my ($mapid,$resid)=split(/\./,$id);
                             if ($bighash{'map_type_'.$mapid} ne 'page') {
 				$realpossible++;
                                 $syval=&encode_symb($bighash{'map_id_'.$mapid},
@@ -6021,7 +6802,7 @@ sub latest_rnd_algorithm_id {
 
 sub get_rand_alg {
     my ($courseid)=@_;
-    if (!$courseid) { $courseid=(&Apache::lonxml::whichuser())[1]; }
+    if (!$courseid) { $courseid=(&whichuser())[1]; }
     if ($courseid) {
 	return $env{"course.$courseid.rndseed"};
     }
@@ -6047,7 +6828,7 @@ sub getCODE {
 sub rndseed {
     my ($symb,$courseid,$domain,$username)=@_;
 
-    my ($wsymb,$wcourseid,$wdomain,$wusername)=&Apache::lonxml::whichuser();
+    my ($wsymb,$wcourseid,$wdomain,$wusername)=&whichuser();
     if (!$symb) {
 	unless ($symb=$wsymb) { return time; }
     }
@@ -6055,6 +6836,7 @@ sub rndseed {
     if (!$domain) { $domain=$wdomain; }
     if (!$username) { $username=$wusername }
     my $which=&get_rand_alg();
+
     if (defined(&getCODE())) {
 	if ($which eq '64bit5') {
 	    return &rndseed_CODE_64bit5($symb,$courseid,$domain,$username);
@@ -6088,8 +6870,8 @@ sub rndseed_32bit {
 	my $domainseed=unpack("%32C*",$domain) << 7;
 	my $courseseed=unpack("%32C*",$courseid);
 	my $num=$symbseed+$nameseed+$domainseed+$courseseed+$namechck+$symbchck;
-	#&Apache::lonxml::debug("$symbseed:$nameseed;$domainseed|$courseseed;$namechck:$symbchck");
-	#&Apache::lonxml::debug("rndseed :$num:$symb");
+	#&logthis("$symbseed:$nameseed;$domainseed|$courseseed;$namechck:$symbchck");
+	#&logthis("rndseed :$num:$symb");
 	if ($_64bit) { $num=(($num<<32)>>32); }
 	return $num;
     }
@@ -6109,9 +6891,8 @@ sub rndseed_64bit {
 	
 	my $num1=$symbchck+$symbseed+$namechck;
 	my $num2=$nameseed+$domainseed+$courseseed;
-	#&Apache::lonxml::debug("$symbseed:$nameseed;$domainseed|$courseseed;$namechck:$symbchck");
-	#&Apache::lonxml::debug("rndseed :$num:$symb");
-	if ($_64bit) { $num1=(($num1<<32)>>32); $num2=(($num2<<32)>>32); }
+	#&logthis("$symbseed:$nameseed;$domainseed|$courseseed;$namechck:$symbchck");
+	#&logthis("rndseed :$num:$symb");
 	if ($_64bit) { $num1=(($num1<<32)>>32); $num2=(($num2<<32)>>32); }
 	return "$num1,$num2";
     }
@@ -6133,8 +6914,9 @@ sub rndseed_64bit2 {
 	
 	my $num1=$symbchck+$symbseed+$namechck;
 	my $num2=$nameseed+$domainseed+$courseseed;
-	#&Apache::lonxml::debug("$symbseed:$nameseed;$domainseed|$courseseed;$namechck:$symbchck");
-	#&Apache::lonxml::debug("rndseed :$num:$symb");
+	#&logthis("$symbseed:$nameseed;$domainseed|$courseseed;$namechck:$symbchck");
+	#&logthis("rndseed :$num:$symb");
+	if ($_64bit) { $num1=(($num1<<32)>>32); $num2=(($num2<<32)>>32); }
 	return "$num1,$num2";
     }
 }
@@ -6155,8 +6937,8 @@ sub rndseed_64bit3 {
 	
 	my $num1=$symbchck+$symbseed+$namechck;
 	my $num2=$nameseed+$domainseed+$courseseed;
-	#&Apache::lonxml::debug("$symbseed:$nameseed;$domainseed|$courseseed;$namechck:$symbchck");
-	#&Apache::lonxml::debug("rndseed :$num1:$num2:$_64bit");
+	#&logthis("$symbseed:$nameseed;$domainseed|$courseseed;$namechck:$symbchck");
+	#&logthis("rndseed :$num1:$num2:$_64bit");
 	if ($_64bit) { $num1=(($num1<<32)>>32); $num2=(($num2<<32)>>32); }
 	
 	return "$num1:$num2";
@@ -6179,8 +6961,8 @@ sub rndseed_64bit4 {
 	
 	my $num1=$symbchck+$symbseed+$namechck;
 	my $num2=$nameseed+$domainseed+$courseseed;
-	#&Apache::lonxml::debug("$symbseed:$nameseed;$domainseed|$courseseed;$namechck:$symbchck");
-	#&Apache::lonxml::debug("rndseed :$num1:$num2:$_64bit");
+	#&logthis("$symbseed:$nameseed;$domainseed|$courseseed;$namechck:$symbchck");
+	#&logthis("rndseed :$num1:$num2:$_64bit");
 	if ($_64bit) { $num1=(($num1<<32)>>32); $num2=(($num2<<32)>>32); }
 	
 	return "$num1:$num2";
@@ -6204,8 +6986,8 @@ sub rndseed_CODE_64bit {
 	my $courseseed=unpack("%32S*",$courseid.' ');
 	my $num1=$symbseed+$CODEchck;
 	my $num2=$CODEseed+$courseseed+$symbchck;
-	#&Apache::lonxml::debug("$symbseed:$CODEchck|$CODEseed:$courseseed:$symbchck");
-	#&Apache::lonxml::debug("rndseed :$num1:$num2:$symb");
+	#&logthis("$symbseed:$CODEchck|$CODEseed:$courseseed:$symbchck");
+	#&logthis("rndseed :$num1:$num2:$symb");
 	if ($_64bit) { $num1=(($num1<<32)>>32); }
 	if ($_64bit) { $num2=(($num2<<32)>>32); }
 	return "$num1:$num2";
@@ -6223,8 +7005,8 @@ sub rndseed_CODE_64bit4 {
 	my $courseseed=unpack("%32S*",$courseid.' ');
 	my $num1=$symbseed+$CODEchck;
 	my $num2=$CODEseed+$courseseed+$symbchck;
-	#&Apache::lonxml::debug("$symbseed:$CODEchck|$CODEseed:$courseseed:$symbchck");
-	#&Apache::lonxml::debug("rndseed :$num1:$num2:$symb");
+	#&logthis("$symbseed:$CODEchck|$CODEseed:$courseseed:$symbchck");
+	#&logthis("rndseed :$num1:$num2:$symb");
 	if ($_64bit) { $num1=(($num1<<32)>>32); }
 	if ($_64bit) { $num2=(($num2<<32)>>32); }
 	return "$num1:$num2";
@@ -6285,8 +7067,7 @@ sub ireceipt {
     my $return =&recprefix($fucourseid).'-';
     if ($env{"course.$fucourseid.receiptalg"} eq 'receipt2' ||
 	$env{'request.state'} eq 'construct') {
-	&Apache::lonxml::debug("doing receipt2  using parts $cpart, uname $cuname and udom $cudom gets  ".($cpart%$cuname).
-			       " and ".($cpart%$cudom));
+	#&logthis("doing receipt2  using parts $cpart, uname $cuname and udom $cudom gets  ".($cpart%$cuname)." and ".($cpart%$cudom));
 			       
 	$return.= ($cunique%$cuname+
 		   $cunique%$cudom+
@@ -6309,10 +7090,48 @@ sub ireceipt {
 
 sub receipt {
     my ($part)=@_;
-    my ($symb,$courseid,$domain,$name) = &Apache::lonxml::whichuser();
+    my ($symb,$courseid,$domain,$name) = &whichuser();
     return &ireceipt($name,$domain,$courseid,$symb,$part);
 }
 
+sub whichuser {
+    my ($passedsymb)=@_;
+    my ($symb,$courseid,$domain,$name,$publicuser);
+    if (defined($env{'form.grade_symb'})) {
+	my ($tmp_courseid)=&get_env_multiple('form.grade_courseid');
+	my $allowed=&allowed('vgr',$tmp_courseid);
+	if (!$allowed &&
+	    exists($env{'request.course.sec'}) &&
+	    $env{'request.course.sec'} !~ /^\s*$/) {
+	    $allowed=&allowed('vgr',$tmp_courseid.
+			      '/'.$env{'request.course.sec'});
+	}
+	if ($allowed) {
+	    ($symb)=&get_env_multiple('form.grade_symb');
+	    $courseid=$tmp_courseid;
+	    ($domain)=&get_env_multiple('form.grade_domain');
+	    ($name)=&get_env_multiple('form.grade_username');
+	    return ($symb,$courseid,$domain,$name,$publicuser);
+	}
+    }
+    if (!$passedsymb) {
+	$symb=&symbread();
+    } else {
+	$symb=$passedsymb;
+    }
+    $courseid=$env{'request.course.id'};
+    $domain=$env{'user.domain'};
+    $name=$env{'user.name'};
+    if ($name eq 'public' && $domain eq 'public') {
+	if (!defined($env{'form.username'})) {
+	    $env{'form.username'}.=time.rand(10000000);
+	}
+	$name.=$env{'form.username'};
+    }
+    return ($symb,$courseid,$domain,$name,$publicuser);
+
+}
+
 # ------------------------------------------------------------ Serves up a file
 # returns either the contents of the file or 
 # -1 if the file doesn't exist
@@ -6335,7 +7154,7 @@ sub repcopy_userfile {
     if ($file =~ m -^/*(uploaded|editupload)/-) { $file=&filelocation("",$file); }
     if ($file =~ m|^/home/httpd/html/lonUsers/|) { return 'ok'; }
     my ($cdom,$cnum,$filename) = 
-	($file=~m|^\Q$perlvar{'lonDocRoot'}\E/+userfiles/+([^/]+)/+([^/]+)/+(.*)|);
+	($file=~m|^\Q$perlvar{'lonDocRoot'}\E/+userfiles/+($match_domain)/+($match_name)/+(.*)|);
     my ($info,$rtncode);
     my $uri="/uploaded/$cdom/$cnum/$filename";
     if (-e "$file") {
@@ -6366,14 +7185,7 @@ sub repcopy_userfile {
     } else {
 	my $lwpresp = &getuploaded('GET',$uri,$cdom,$cnum,\$info,\$rtncode);
 	if ($lwpresp ne 'ok') {
-	    my $ua=new LWP::UserAgent;
-	    my $request=new HTTP::Request('GET',&tokenwrapper($uri));
-	    my $response=$ua->request($request);
-	    if ($response->is_success()) {
-		$info=$response->content;
-	    } else {
-		return -1;
-	    }
+	    return -1;
 	}
 	my @parts = ($cdom,$cnum); 
 	if ($filename =~ m|^(.+)/[^/]+$|) {
@@ -6436,7 +7248,7 @@ sub readfile {
     my $fh;
     open($fh,"<$file");
     my $a='';
-    while (<$fh>) { $a .=$_; }
+    while (my $line = <$fh>) { $a .= $line; }
     return $a;
 }
 
@@ -6452,12 +7264,12 @@ sub filelocation {
     if ($file=~m:^/~:) { # is a contruction space reference
         $location = $file;
         $location =~ s:/~(.*?)/(.*):/home/$1/public_html/$2:;
-    } elsif ($file=~m:^/home/[^/]*/public_html/:) {
+    } elsif ($file=~m{^/home/$match_username/public_html/}) {
 	# is a correct contruction space reference
         $location = $file;
     } elsif ($file=~/^\/*(uploaded|editupload)/) { # is an uploaded file
         my ($udom,$uname,$filename)=
-  	    ($file=~m -^/+(?:uploaded|editupload)/+([^/]+)/+([^/]+)/+(.*)$-);
+  	    ($file=~m -^/+(?:uploaded|editupload)/+($match_domain)/+($match_name)/+(.*)$-);
         my $home=&homeserver($uname,$udom);
         my $is_me=0;
         my @ids=&current_machine_ids();
@@ -6494,10 +7306,10 @@ sub hreflocation {
     }
     if ($file=~m-^\Q$perlvar{'lonDocRoot'}\E-) {
 	$file=~s-^\Q$perlvar{'lonDocRoot'}\E--;
-    } elsif ($file=~m-/home/(\w+)/public_html/-) {
-	$file=~s-^/home/(\w+)/public_html/-/~$1/-;
+    } elsif ($file=~m-/home/($match_username)/public_html/-) {
+	$file=~s-^/home/($match_username)/public_html/-/~$1/-;
     } elsif ($file=~m-^\Q$perlvar{'lonUsersDir'}\E-) {
-	$file=~s-^/home/httpd/lonUsers/([^/]*)/./././([^/]*)/userfiles/
+	$file=~s-^/home/httpd/lonUsers/($match_domain)/./././($match_name)/userfiles/
 	    -/uploaded/$1/$2/-x;
     }
     return $file;
@@ -6527,6 +7339,29 @@ sub current_machine_ids {
     return @ids;
 }
 
+sub additional_machine_domains {
+    my @domains;
+    open(my $fh,"<$perlvar{'lonTabDir'}/expected_domains.tab");
+    while( my $line = <$fh>) {
+        $line =~ s/\s//g;
+        push(@domains,$line);
+    }
+    return @domains;
+}
+
+sub default_login_domain {
+    my $domain = $perlvar{'lonDefDomain'};
+    my $testdomain=(split(/\./,$ENV{'HTTP_HOST'}))[0];
+    foreach my $posdom (&current_machine_domains(),
+                        &additional_machine_domains()) {
+        if (lc($posdom) eq lc($testdomain)) {
+            $domain=$posdom;
+            last;
+        }
+    }
+    return $domain;
+}
+
 # ------------------------------------------------------------- Declutters URLs
 
 sub declutter {
@@ -6575,6 +7410,15 @@ sub clutter {
     return $thisfn;
 }
 
+sub clutter_with_no_wrapper {
+    my $uri = &clutter(shift);
+    if ($uri =~ m-^/adm/-) {
+	$uri =~ s-^/adm/wrapper/-/-;
+	$uri =~ s-^/adm/coursedocs/showdoc/-/-;
+    }
+    return $uri;
+}
+
 sub freeze_escape {
     my ($value)=@_;
     if (ref($value)) {
@@ -6627,29 +7471,8 @@ BEGIN {
 # ----------------------------------- Read loncapa.conf and loncapa_apache.conf
     unless ($readit) {
 {
-    # FIXME: Use LONCAPA::Configuration::read_conf here and omit next block
-    open(my $config,"</etc/httpd/conf/loncapa.conf");
-
-    while (my $configline=<$config>) {
-        if ($configline=~/\S/ && $configline =~ /^[^\#]*PerlSetVar/) {
-	   my ($dummy,$varname,$varvalue)=split(/\s+/,$configline);
-           chomp($varvalue);
-           $perlvar{$varname}=$varvalue;
-        }
-    }
-    close($config);
-}
-{
-    open(my $config,"</etc/httpd/conf/loncapa_apache.conf");
-
-    while (my $configline=<$config>) {
-        if ($configline =~ /^[^\#]*PerlSetVar/) {
-	   my ($dummy,$varname,$varvalue)=split(/\s+/,$configline);
-           chomp($varvalue);
-           $perlvar{$varname}=$varvalue;
-        }
-    }
-    close($config);
+    my $configvars = LONCAPA::Configuration::read_conf('loncapa.conf');
+    %perlvar = (%perlvar,%{$configvars});
 }
 
 # ------------------------------------------------------------ Read domain file
@@ -6659,12 +7482,12 @@ BEGIN {
     %domain_auth_arg_def = ();
     my $fh;
     if (open($fh,"<".$Apache::lonnet::perlvar{'lonTabDir'}.'/domain.tab')) {
-       while (<$fh>) {
-           next if (/^(\#|\s*$)/);
+	while (my $line = <$fh>) {
+           next if ($line =~ /^(\#|\s*$)/);
 #           next if /^\#/;
-           chomp;
+           chomp $line;
            my ($domain, $domain_description, $def_auth, $def_auth_arg,
-	       $def_lang, $city, $longi, $lati, $primary) = split(/:/,$_);
+	       $def_lang, $city, $longi, $lati, $primary) = split(/:/,$line,9);
 	   $domain_auth_def{$domain}=$def_auth;
            $domain_auth_arg_def{$domain}=$def_auth_arg;
 	   $domaindescription{$domain}=$domain_description;
@@ -6731,7 +7554,9 @@ sub get_iphost {
     while (my $configline=<$config>) {
        chomp($configline);
        if ($configline) {
-          $spareid{$configline}=1;
+	   my ($host,$type) = split(':',$configline,2);
+	   if (!defined($type) || $type eq '') { $type = 'default' };
+	   push(@{ $spareid{$type} }, $host);
        }
     }
     close($config);
@@ -6757,8 +7582,14 @@ sub get_iphost {
     while (my $configline=<$config>) {
 	chomp($configline);
 	if ($configline) {
-	    my ($short,$plain)=split(/:/,$configline);
-	    if ($plain ne '') { $prp{$short}=$plain; }
+	    my ($short,@plain)=split(/:/,$configline);
+            %{$prp{$short}} = ();
+	    if (@plain > 0) {
+                $prp{$short}{'std'} = $plain[0];
+                for (my $i=1; $i<@plain; $i++) {
+                    $prp{$short}{'alt'.$i} = $plain[$i];  
+                }
+            }
 	}
     }
     close($config);
@@ -6787,7 +7618,9 @@ sub get_iphost {
 
 }
 
-$memcache=new Cache::Memcached({'servers'=>['127.0.0.1:11211']});
+$memcache=new Cache::Memcached({'servers'           => ['127.0.0.1:11211'],
+				'compress_threshold'=> 20_000,
+ 			        });
 
 $processmarker='_'.time.'_'.$perlvar{'lonHostID'};
 $dumpcount=0;
@@ -6984,6 +7817,13 @@ B<delenv($regexp)>: removes all items fr
 environment file that matches the regular expression in $regexp. The
 values are also delted from the current processes %env.
 
+=item * get_env_multiple($name) 
+
+gets $name from the %env hash, it seemlessly handles the cases where multiple
+values may be defined and end up as an array ref.
+
+returns an array of values
+
 =back
 
 =head2 User Information
@@ -7046,13 +7886,13 @@ passed in @what from the requested user'
 
 =item *
 
-allowed($priv,$uri) : check for a user privilege; returns codes for allowed
-actions
+allowed($priv,$uri,$symb,$role) : check for a user privilege; returns codes for allowed actions
  F: full access
  U,I,K: authentication modes (cxx only)
  '': forbidden
  1: user needs to choose course
  2: browse allowed
+ A: passphrase authentication needed
 
 =item *
 
@@ -7452,6 +8292,31 @@ cput($namespace,$storehash,$udom,$uname)
 
 =item *
 
+newput($namespace,$storehash,$udom,$uname) :
+
+Attempts to store the items in the $storehash, but only if they don't
+currently exist, if this succeeds you can be certain that you have 
+successfully created a new key value pair in the $namespace db.
+
+
+Args:
+ $namespace: name of database to store values to
+ $storehash: hashref to store to the db
+ $udom: (optional) domain of user containing the db
+ $uname: (optional) name of user caontaining the db
+
+Returns:
+ 'ok' -> succeeded in storing all keys of $storehash
+ 'key_exists: <key>' -> failed to anything out of $storehash, as at
+                        least <key> already existed in the db (other
+                        requested keys may also already exist)
+ 'error: <msg>' -> unable to tie the DB or other erorr occured
+ 'con_lost' -> unable to contact request server
+ 'refused' -> action was not allowed by remote machine
+
+
+=item *
+
 eget($namespace,$storearr,$udom,$uname) : returns hash with keys from array
 reference filled in from namesp (encrypts the return communication)
 ($udom and $uname are optional)
@@ -7461,6 +8326,15 @@ reference filled in from namesp (encrypt
 log($udom,$name,$home,$message) : write to permanent log for user; use
 critical subroutine
 
+=item *
+
+get_dom($namespace,$storearr,$udomain) : returns hash with keys from array
+reference filled in from namespace found in domain level on primary domain server ($udomain is optional)
+
+=item *
+
+put_dom($namespace,$storehash,$udomain) :  stores hash in namespace at domain level on primary domain server ($udomain is optional)
+
 =back
 
 =head2 Network Status Functions
@@ -7686,6 +8560,94 @@ removeuploadedurl(): convience function
   Args:
    url:  a full /uploaded/... url to delete
 
+=item * 
+
+get_portfile_permissions():
+  Args:
+    domain: domain of user or course contain the portfolio files
+    user: name of user or num of course contain the portfolio files
+  Returns:
+    hashref of a dump of the proper file_permissions.db
+   
+
+=item * 
+
+get_access_controls():
+
+Args:
+  current_permissions: the hash ref returned from get_portfile_permissions()
+  group: (optional) the group you want the files associated with
+  file: (optional) the file you want access info on
+
+Returns:
+    a hash (keys are file names) of hashes containing
+        keys are: path to file/file_name\0uniqueID:scope_end_start (see below)
+        values are XML containing access control settings (see below) 
+
+Internal notes:
+
+ access controls are stored in file_permissions.db as key=value pairs.
+    key -> path to file/file_name\0uniqueID:scope_end_start
+        where scope -> public,guest,course,group,domains or users.
+              end -> UNIX time for end of access (0 -> no end date)
+              start -> UNIX time for start of access
+
+    value -> XML description of access control
+           <scope type=""> (type =1 of: public,guest,course,group,domains,users">
+            <start></start>
+            <end></end>
+
+            <password></password>  for scope type = guest
+
+            <domain></domain>     for scope type = course or group
+            <number></number>
+            <roles id="">
+             <role></role>
+             <access></access>
+             <section></section>
+             <group></group>
+            </roles>
+
+            <dom></dom>         for scope type = domains
+
+            <users>             for scope type = users
+             <user>
+              <uname></uname>
+              <udom></udom>
+             </user>
+            </users>
+           </scope> 
+              
+ Access data is also aggregated for each file in an additional key=value pair:
+ key -> path to file/file_name\0accesscontrol 
+ value -> reference to hash
+          hash contains key = value pairs
+          where key = uniqueID:scope_end_start
+                value = UNIX time record was last updated
+
+          Used to improve speed of look-ups of access controls for each file.  
+ 
+ Locks on files (resulting from submission of portfolio file to a homework problem stored in array of arrays.
+
+modify_access_controls():
+
+Modifies access controls for a portfolio file
+Args
+1. file name
+2. reference to hash of required changes,
+3. domain
+4. username
+  where domain,username are the domain of the portfolio owner 
+  (either a user or a course) 
+
+Returns:
+1. result of additions or updates ('ok' or 'error', with error message). 
+2. result of deletions ('ok' or 'error', with error message).
+3. reference to hash of any new or updated access controls.
+4. reference to hash used to map incoming IDs to uniqueIDs assigned to control.
+   key = integer (inbound ID)
+   value = uniqueID  
+
 =back
 
 =head2 HTTP Helper Routines
<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML 2.0//EN">
<html><head>
<title>500 Internal Server Error</title>
</head><body>
<h1>Internal Server Error</h1>
<p>The server encountered an internal error or
misconfiguration and was unable to complete
your request.</p>
<p>Please contact the server administrator at 
 root@localhost to inform them of the time this error occurred,
 and the actions you performed just before this error.</p>
<p>More information about this error may be available
in the server error log.</p>
</body></html>